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Gene TSNARE1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene TSNARE1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI463168 testis TSNARE1.a 1 to 547 1 to 544   tiling clone,   544/544
(100 %)
15 diff
(97.3 %id)
DA229159 brain TSNARE1.a 61 to 569 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
DB152760 thymus TSNARE1.a 61 to 633 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA086646 cerebellum TSNARE1.a 65 to 569 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DN989721 brain, whole brain TSNARE1.a 100 to 492 1 to 393       393/394
(99 %)
3 diff
(99.3 %id)
BP422490 small intestine TSNARE1.a 102 to 621 1 to 521     Submitted on the opposite strand 521/522
(99 %)
4 diff
(99.3 %id)
BC126343 Brain, cerebral cortex, PCR rescued clones TSNARE1.a 139 to 1880 1 to 1742   tiling clone,   1742/1742
(100 %)
1 diff
(100.0 %id)
BC143686 Brain, cerebral cortex, PCR rescued clones TSNARE1.a 139 to 1880 1 to 1742       1742/1742
(100 %)
2 diff
(99.9 %id)
TI_2194630504   TSNARE1.a 619 to 1816 1 to 1191       1193/1238
(96 %)
20 diff
(98.4 %id)
TI_2194629279   TSNARE1.a 824 to 1883 1120 to 67       1054/1276
(82 %)
8 diff
(99.4 %id)
TI_2194629612   TSNARE1.a 924 to 1883 1024 to 67       958/1229
(77 %)
3 diff
(99.8 %id)
TI_2194630506   TSNARE1.a 1015 to 1883 1 to 868       868/1227
(70 %)
8 diff
(99.4 %id)
TI_1520874953   TSNARE1.a 1033 to 1880 19 to 866       848/1240
(68 %)
8 diff
(99.4 %id)
TI_1520876407   TSNARE1.a 1091 to 1524 443 to 9       435/443
(98 %)
2 diff
(99.6 %id)
DA477878   TSNARE1.b 1 to 582 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
TI_2194628898   TSNARE1.b 177 to 1294 38 to 1147       1116/1286
(86 %)
17 diff
(98.7 %id)
TI_2194629608   TSNARE1.b 177 to 1359 40 to 1205       1172/1236
(94 %)
57 diff
(95.4 %id)
BC143684 Brain, cerebral cortex, PCR rescued clones TSNARE1.b 186 to 1921 1 to 1736   tiling clone,   1736/1736
(100 %)
1 diff
(100.0 %id)
TI_57202720   TSNARE1.b 624 to 1270 68 to 712       645/712
(90 %)
6 diff
(99.2 %id)
BI823540 pooled brain, lung, testis TSNARE1.b 628 to 1270 1 to 642       642/642
(100 %)
8 diff
(98.8 %id)
TI_2194629611   TSNARE1.b 846 to 1922 1139 to 68       1072/1217
(88 %)
20 diff
(98.4 %id)
TI_2194629277   TSNARE1.b 932 to 1922 1058 to 67   tiling clone,   992/1247
(79 %)
3 diff
(99.8 %id)
NM_145003.3   TSNARE1.c 1 to 1904 1 to 1904 exact RefSeq, AAA   1904/1904
(100 %)
0 diff
(100 %id)
AK055726 Kidney TSNARE1.c 5 to 1904 1 to 1900 F18L R55P T118A tiling clone, available from FLJ, AAA   1900/1900
(100 %)
4 diff
(99.8 %id)
DA621065 Kidney TSNARE1.c 6 to 804 2 to 808   capped   807/808
(99 %)
24 diff
(97.1 %id)
TI_1243018415   TSNARE1.c 71 to 1200 40 to 1162       1129/1241
(90 %)
20 diff
(98.4 %id)
TI_1243019753   TSNARE1.c 71 to 662 607 to 16       592/1232
(48 %)
4 diff
(99.7 %id)
TI_1520874377   TSNARE1.c 71 to 1192 41 to 1164       1130/1234
(91 %)
29 diff
(97.7 %id)
TI_1520874935   TSNARE1.c 71 to 1032 37 to 995       965/1190
(81 %)
13 diff
(99.0 %id)
TI_2194628900   TSNARE1.c 71 to 1192 37 to 1155       1125/1285
(87 %)
13 diff
(99.0 %id)
TI_2194629609   TSNARE1.c 71 to 1158 39 to 1115       1083/1227
(88 %)
21 diff
(98.3 %id)
BC113556 Brain, cerebral cortex, PCR rescued clones TSNARE1.c 80 to 1818 1 to 1739 exact tiling clone,   1739/1739
(100 %)
1 diff
(100.0 %id)
TI_1243019757   TSNARE1.c 355 to 1464 1119 to 5       1115/1170
(95 %)
13 diff
(98.9 %id)
BQ647160 hepatocellular carcinoma, cell line, Liver TSNARE1.c 432 to 1101 1 to 670       670/997
(67 %)
7 diff
(99.3 %id)
BQ651238 hepatocellular carcinoma, cell line, Liver TSNARE1.c 432 to 1166 1 to 742       742/961
(77 %)
18 diff
(98.2 %id)
TI_1243022101   TSNARE1.c 532 to 1171 649 to 9       641/799
(80 %)
12 diff
(98.5 %id)
BX355483 Neuroblastoma Cot 50-normalized TSNARE1.c 581 to 1541 1 to 958       958/958
(100 %)
15 diff
(98.5 %id)
TI_1243018419   TSNARE1.c 778 to 1818 1109 to 71       1039/1219
(85 %)
20 diff
(98.4 %id)
DB320296 Kidney TSNARE1.c 1409 to 1904 511 to 13   AAA   499/516
(96 %)
8 diff
(98.5 %id)
TI_2194630502   TSNARE1.c 1433 to 1821 9 to 397       389/1249
(31 %)
9 diff
(99.3 %id)
TI_1520876413   TSNARE1.c 1436 to 1818 12 to 396       385/485
(79 %)
8 diff
(98.4 %id)
AL119212 amygdala TSNARE1.d 1 to 208 1 to 211   tiling clone,   211/211
(100 %)
5 diff
(97.7 %id)
BC065226 Brain, fetal, whole pooled TSNARE1.d 27 to 2125 1 to 2099   tiling clone, available from MGC, AAA   2099/2099
(100 %)
1 diff
(100.0 %id)
BQ067865 brain TSNARE1.d 28 to 763 1 to 736   available from MGC,   736/1036
(71 %)
13 diff
(98.8 %id)
AL545248 placenta, Placenta Cot 25-normalized TSNARE1.d 1269 to 2124 1 to 856       856/856
(100 %)
1 diff
(99.9 %id)
BM921036 pooled brain, lung, testis TSNARE1.d 1312 to 1961 70 to 731       662/1289
(51 %)
26 diff
(98.0 %id)
CX872896 embryonic stem TSNARE1.d 1383 to 2152 1 to 792       792/792
(100 %)
9 diff
(98.9 %id)
BG818433 anaplastic oligodendroglioma with 1p/19qloss, brain TSNARE1.d 1395 to 2100 12 to 717       706/717
(98 %)
6 diff
(99.2 %id)
CA427686 Bone, Subchondral Bone TSNARE1.d 1493 to 2117 645 to 19   AAA   627/627
(100 %)
3 diff
(99.6 %id)
BU740951 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid TSNARE1.d 1497 to 2121 643 to 17   AAA   627/627
(100 %)
2 diff
(99.7 %id)
AW293967   TSNARE1.d 1549 to 2135 602 to 16   AAA   587/587
(100 %)
3 diff
(99.5 %id)
BX115133 Kidney TSNARE1.d 1583 to 2336 1 to 755   tiling clone,   755/755
(100 %)
4 diff
(99.5 %id)
AI792926 Kidney TSNARE1.d 1583 to 2085 1 to 504       504/504
(100 %)
4 diff
(99.3 %id)
BM681649 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid TSNARE1.d 1628 to 2135 522 to 17   AAA   506/514
(98 %)
2 diff
(99.7 %id)
TI_151780235   TSNARE1.d 1628 to 2125 101 to 601       501/977
(51 %)
5 diff
(99.5 %id)
BF509709   TSNARE1.d 1645 to 2121 492 to 16   AAA   477/477
(100 %)
3 diff
(99.4 %id)
AW264598 brain, three pooled meningiomas TSNARE1.d 1659 to 2122 466 to 3       464/466
(99 %)
0 diff
(100 %id)
BG057259 blood, lymphocyte TSNARE1.d 1673 to 2122 456 to 5       452/456
(99 %)
0 diff
(100 %id)
AI813428 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) TSNARE1.d 1675 to 2122 451 to 4       448/451
(99 %)
0 diff
(100 %id)
AA740747 germinal center B cell TSNARE1.d 1690 to 2127 475 to 38   AAA   438/455
(96 %)
0 diff
(100 %id)
AL119213 amygdala TSNARE1.d 1739 to 2123 403 to 19   AAA   385/385
(100 %)
3 diff
(99.3 %id)
AA889136   TSNARE1.d 1740 to 2124 386 to 3       384/386
(99 %)
0 diff
(100 %id)
BF437008 Prostate TSNARE1.d 1782 to 2126 354 to 8       347/354
(98 %)
0 diff
(100 %id)
AA832259 germinal center B cell TSNARE1.d 1803 to 2127 362 to 38   AAA   325/325
(100 %)
2 diff
(99.4 %id)
BE041415 pooled TSNARE1.d 1841 to 2123 293 to 11   AAA   283/283
(100 %)
1 diff
(99.7 %id)
BF529741 anaplastic oligodendroglioma with 1p/19qloss, brain TSNARE1.d 1930 to 2396 1 to 466   tiling clone,   466/466
(100 %)
3 diff
(99.4 %id)
BG389512 embryonal carcinoma, cell line, testis TSNARE1.e 1 to 828 1 to 818 G3A P4L L6F R7A W8G ... tiling clone,   818/942
(86 %)
18 diff
(98.1 %id)
AW043857 pooled TSNARE1.e 730 to 938 223 to 15   tiling clone, AAA   209/209
(100 %)
3 diff
(98.6 %id)
DB032166 testis TSNARE1.f 1 to 588 2 to 590 G31R S32I I33H A34R R35P ... tiling clone, capped   589/589
(100 %)
1 diff
(99.9 %id)
BQ899320 sciatic nerve TSNARE1.g-u 1 to 863 1 to 875 exact tiling clone,   875/878
(99 %)
24 diff
(97.3 %id)
BU167094 melanotic melanoma, skin TSNARE1.h-u 1 to 723 27 to 760 exact tiling clone,   734/839
(87 %)
34 diff
(96.0 %id)
AW818228 stomach TSNARE1.h-u 128 to 434 308 to 3       306/308
(99 %)
0 diff
(100 %id)
H17431 whole brain TSNARE1.i 1 to 316 27 to 344 P2G A3P L6P L7X L8S ... tiling clone,   318/344
(92 %)
14 diff
(96.0 %id)
H17432 whole brain TSNARE1.i 1024 to 1407 405 to 15   tiling clone, AAA   391/400
(97 %)
9 diff
(97.8 %id)
DA310855 hippocampus TSNARE1.j 1 to 533 2 to 534 T29A tiling clone, capped   533/552
(96 %)
2 diff
(99.7 %id)
DA310891 hippocampus TSNARE1.j 1 to 513 2 to 514   capped   513/513
(100 %)
1 diff
(99.9 %id)
BG998964 head_neck TSNARE1.k-u 1 to 299 16 to 313 G4A E5K A6L V7M G8W ... tiling clone,   298/313
(95 %)
6 diff
(98.1 %id)
BX491087   Gene TSNARE1, variant not shown         This clone was ignored    
BX491088   Gene TSNARE1, variant not shown         This clone was ignored    
CN310886 embryonic stem cells, DMSO-treated H9 cellline Gene TSNARE1, variant not shown         Suspected internal deletion, this clone was ignored    
AA423823 ovarian tumor, ovary Gene TSNARE1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C