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Gene SCLT1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
94 supporting clones for gene SCLT1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA255381 caudate nucleus .a 1 to 563 3 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA607913   .a 1 to 623 2 to 623   capped   622/622
(100 %)
1 diff
(99.9 %id)
DA043244 bladder .a 18 to 584 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA882077   .a 18 to 583 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CN295225 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 29 to 428 1 to 400       400/400
(100 %)
1 diff
(99.8 %id)
BF541475 hypernephroma, Kidney .a 40 to 509 1 to 477       477/488
(97 %)
16 diff
(96.8 %id)
DA998076   .a 42 to 550 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
AL711976 human skeletal muscle .a 71 to 551 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
DA331783 hippocampus .a 74 to 675 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DA677904   .a 79 to 656 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA671121   .a 87 to 653 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA584125 lung .a 110 to 701 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA645379   .a 110 to 614 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DW464775 Liver .a 119 to 460 18 to 359       342/362
(94 %)
3 diff
(99.2 %id)
EL735059 mixed .a 476 to 713 1 to 238       238/402
(59 %)
2 diff
(99.6 %id)
AK055217   .a 510 to 2787 539 to 2816 S441C tiling clone, available from FLJ,   2816/2816
(100 %)
2 diff
(100.0 %id)
DA472393   .a 510 to 516 539 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BP236354 coronary artery .a 510 to 574 528 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DA586805 lung .a 510 to 577 530 to 597   capped   596/611
(97 %)
1 diff
(99.9 %id)
NM_144643.2   .a 510 to 3022 541 to 3053 exact RefSeq,   3053/3053
(100 %)
0 diff
(100 %id)
DR000267 fetal brain .a 510 to 577 532 to 599       591/611
(96 %)
17 diff
(97.3 %id)
BU177147 melanotic melanoma, skin .a 612 to 1316 57 to 765       709/908
(78 %)
23 diff
(97.5 %id)
BG339994 leiomyosarcoma cell line, uterus .a 781 to 1464 1 to 689   tiling clone,   689/918
(75 %)
11 diff
(98.9 %id)
M85536   .a 1258 to 1561 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
AW841206 colon_normal .a 1767 to 2222 456 to 2       455/477
(95 %)
2 diff
(99.6 %id)
BG679659 skin, squamous cell carcinoma .a 1796 to 2583 1 to 795       795/795
(100 %)
14 diff
(98.3 %id)
BE890996 melanotic melanoma, skin .a 1818 to 2416 1 to 600       600/600
(100 %)
3 diff
(99.5 %id)
BF817781 colon_ins .a 1847 to 2384 545 to 11     Submitted on the opposite strand 535/568
(94 %)
6 diff
(99.0 %id)
BM458389 lymph, lymphoma, cell line .a 1848 to 2677 36 to 865       830/1146
(72 %)
14 diff
(98.8 %id)
FN100719 breast carcinoma .a 1984 to 2087 1 to 106       106/106
(100 %)
2 diff
(98.2 %id)
BM836754 Ascites, stomach .a 2010 to 2630 1 to 620       620/620
(100 %)
4 diff
(99.4 %id)
AW904415 nervous_normal .a 2033 to 2171 140 to 2       139/140
(99 %)
5 diff
(96.5 %id)
EL954248 eyeball .a 2083 to 2372 1 to 291       291/291
(100 %)
6 diff
(98.0 %id)
BG197959   .a 2105 to 2346 1 to 242       242/244
(99 %)
6 diff
(97.6 %id)
BG203634   .a 2115 to 2697 1 to 585       585/587
(99 %)
10 diff
(98.3 %id)
BG204665   .a 2115 to 2434 1 to 320       320/320
(100 %)
0 diff
(100 %id)
BG206279   .a 2115 to 2390 1 to 276       276/276
(100 %)
0 diff
(100 %id)
CD679143 eye, Trabecular meshwork .a 2208 to 2828 1 to 622       622/622
(100 %)
3 diff
(99.6 %id)
BU958869 mixed (pool of 40 RNAs) .a 2237 to 2982 1 to 759       759/759
(100 %)
15 diff
(98.1 %id)
FN177086 breast carcinoma .a 2263 to 2342 1 to 81       81/81
(100 %)
3 diff
(96.3 %id)
DB314786   .a 2321 to 2787 468 to 1       468/470
(99 %)
2 diff
(99.6 %id)
BG193311   .a 2325 to 2773 25 to 467   AAA   443/467
(94 %)
7 diff
(98.6 %id)
BQ447051 Knee, Osteoarthritic Cartilage .a 2347 to 3022 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
BG210856   .a 2474 to 3022 1 to 548   AAA   548/548
(100 %)
14 diff
(97.5 %id)
BG216035   .a 2474 to 2773 3 to 302   AAA   300/302
(99 %)
9 diff
(97.1 %id)
BG183864   .a 2477 to 3022 1 to 545   AAA   545/545
(100 %)
5 diff
(99.1 %id)
BG190238   .a 2482 to 2773 13 to 303   AAA   291/303
(96 %)
14 diff
(95.4 %id)
BG192770   .a 2482 to 2773 10 to 299   AAA   290/300
(96 %)
6 diff
(98.0 %id)
BG193310   .a 2482 to 3021 11 to 550       540/550
(98 %)
6 diff
(99.0 %id)
BG201966   .a 2485 to 2773 12 to 300   AAA   289/300
(96 %)
6 diff
(98.0 %id)
BG191720   .a 2491 to 2773 22 to 303   AAA   282/303
(93 %)
6 diff
(98.1 %id)
BG212958   .a 2491 to 2778 19 to 305   AAA   287/305
(94 %)
6 diff
(98.1 %id)
BG213481   .a 2494 to 2773 26 to 305   AAA   280/305
(91 %)
6 diff
(98.1 %id)
BI496359 cochlea, ear .a 2498 to 3022 1 to 525   tiling clone, fully sequenced, AAA   525/525
(100 %)
5 diff
(99.1 %id)
AW513286 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2520 to 3022 503 to 1       503/503
(100 %)
0 diff
(100 %id)
BI496358 cochlea, ear .a 2543 to 3022 514 to 35   fully sequenced, AAA   480/480
(100 %)
0 diff
(100 %id)
AW770398 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2545 to 3022 478 to 1       478/478
(100 %)
0 diff
(100 %id)
AI768586 Kidney .a 2561 to 3028 467 to 1       467/467
(100 %)
3 diff
(99.4 %id)
BF438026 carcinoid, lung .a 2722 to 3026 306 to 1       306/306
(100 %)
2 diff
(99.4 %id)
AK122852 hippocampus .b 1 to 3672 2 to 3676 A205K K206P V207K K208* tiling clone, available from FLJ,   3676/3676
(100 %)
17 diff
(99.6 %id)
DA323508 hippocampus .b 1 to 560 2 to 563   capped   562/562
(100 %)
14 diff
(97.6 %id)
AW869104 stomach_normal .b 568 to 1024 459 to 2   tiling clone,   458/459
(99 %)
0 diff
(100 %id)
DB309238 hippocampus .b 3179 to 3672 497 to 1       497/497
(100 %)
5 diff
(99.0 %id)
BC121057 PCR rescued clones .c 1 to 1365 1 to 1365 exact tiling clone,   1365/1365
(100 %)
2 diff
(99.9 %id)
BC128051 PCR rescued clones .c 2 to 1365 1 to 1364 exact tiling clone,   1364/1364
(100 %)
0 diff
(100 %id)
AK093361 testis .d 1 to 1810 2 to 1811 exact tiling clone, available from FLJ,   1811/1811
(100 %)
2 diff
(99.9 %id)
AX748077   .d 1 to 1810 2 to 1811 exact     1811/1811
(100 %)
2 diff
(99.9 %id)
DB032925 testis .d 1 to 567 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB337186 testis .d 1272 to 1810 541 to 1       541/541
(100 %)
6 diff
(98.9 %id)
BC121058 PCR rescued clones .e 1 to 966 1 to 966 exact tiling clone,   966/966
(100 %)
0 diff
(100 %id)
BC040258 Brain, adult, 6 pooled whole brains .f 1 to 2096 1 to 2096 exact tiling clone, available from MGC, AAA   2096/2096
(100 %)
2 diff
(100.0 %id)
BI755849 brain .f 1 to 734 1 to 731 exact available from MGC,   731/731
(100 %)
5 diff
(99.4 %id)
TI_57216498   .f 1 to 734 30 to 760 exact     731/760
(96 %)
8 diff
(99.0 %id)
TI_154044368   .f 96 to 919 906 to 92 S28P F46S AAA   815/917
(88 %)
24 diff
(97.4 %id)
CA411701 Chondrosarcoma Grade II, Left Pelvis .f 372 to 919 566 to 19   tiling clone, AAA   548/569
(96 %)
2 diff
(99.7 %id)
AA247250   .f 468 to 709 1 to 239       239/239
(100 %)
3 diff
(98.8 %id)
BM986972 mixed .f 1686 to 2097 431 to 20   tiling clone, AAA   412/412
(100 %)
0 diff
(100 %id)
AA005060 liver and spleen .g 1 to 451 3 to 458 Q42E tiling clone,   458/458
(100 %)
6 diff
(98.7 %id)
BP365420 lung .h 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BM924929 pooled lung and spleen .i 1 to 902 1 to 911 exact tiling clone, available from MGC,   911/1010
(90 %)
27 diff
(97.4 %id)
BC064428 Lung, Spleen, fetal, pooled .i 7 to 1699 1 to 1692 exact tiling clone, available from MGC, AAA   1692/1692
(100 %)
2 diff
(99.9 %id)
BX366769 Placenta Cot 25-normalized .i 32 to 827 1 to 795 E10X E17* fully sequenced,   795/795
(100 %)
17 diff
(97.9 %id)
BX374867 Neuroblastoma Cot 25-normalized .i 48 to 959 1 to 913 E17*     913/913
(100 %)
17 diff
(98.2 %id)
BC014677 Ovary, adenocarcinoma .i 301 to 1699 1 to 1394 exact available from MGC, AAA   1394/1394
(100 %)
4 diff
(99.8 %id)
BF035693 adenocarcinoma, ovary .i 321 to 988 1 to 667 exact available from MGC,   667/899
(74 %)
17 diff
(98.2 %id)
BF668603 brain, primitive neuroectoderm .i 771 to 1403 1 to 637       637/638
(99 %)
33 diff
(94.9 %id)
BG532881 embryonal carcinoma, testis .i 781 to 1223 1 to 439       439/441
(99 %)
22 diff
(95.1 %id)
BX366768 Placenta Cot 25-normalized .i 797 to 1682 884 to 1   tiling clone, fully sequenced,   884/884
(100 %)
27 diff
(97.0 %id)
FN143983 breast carcinoma .i 810 to 911 1 to 102   tiling clone,   102/102
(100 %)
0 diff
(100 %id)
BF799793 colon_ins .i 1015 to 1288 285 to 13     Submitted on the opposite strand 273/285
(95 %)
0 diff
(100 %id)
AW083303 colon, moderately differentiated adenocarcinoma .i 1272 to 1682 411 to 1       411/411
(100 %)
0 diff
(100 %id)
CR593773 T cells (Jurkat cell line) Cot10-normalized .j 1 to 1604 1 to 1604 exact tiling clone,   1604/1604
(100 %)
0 diff
(100 %id)
FN132397 breast carcinoma .k-u 1 to 116 1 to 115 S5P P6T L7F F8L L9K ... tiling clone,   115/118
(97 %)
4 diff
(96.7 %id)
CD691962 normal nasopharynx Gene SCLT1, variant not shown              
AL557810 T cells from T cell leukemia Gene SCLT1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AL579773 T cells from T cell leukemia Gene SCLT1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BX509320   Gene SCLT1, variant not shown         This clone was ignored    
R89824 liver and spleen Gene SCLT1, variant not shown         This clone was ignored    
R89862 liver and spleen Gene SCLT1, variant not shown         This clone was ignored    
BP327094 prostata Gene SCLT1, variant not shown              
BP327072 prostata Gene SCLT1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI