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Gene C11orf82andRPL7AP54TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
113 supporting clones for gene C11orf82andRPL7AP54 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA737627   .a 1 to 871 2 to 871   tiling clone, capped   870/870
(100 %)
18 diff
(98.0 %id)
DB370233   .a 3121 to 3692 563 to 1   tiling clone,   563/569
(98 %)
19 diff
(96.7 %id)
DC403125 testis .b 1 to 548 1 to 548   tiling clone,   548/550
(99 %)
2 diff
(99.7 %id)
DN991614 brain, whole brain .b 207 to 843 9 to 645       637/645
(98 %)
1 diff
(99.9 %id)
DB442957 testis .b 417 to 836 1 to 420       420/420
(100 %)
1 diff
(99.8 %id)
DB454086 testis .b 417 to 889 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
NM_145018.3   .b 420 to 3980 1 to 3561 exact RefSeq, AAA   3561/3561
(100 %)
0 diff
(100 %id)
DB089663 testis .b 441 to 1005 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
TI_44349243   .b 445 to 1121 77 to 756       682/756
(90 %)
29 diff
(96.2 %id)
DB089403 testis .b 446 to 986 9 to 549   capped   541/541
(100 %)
0 diff
(100 %id)
BI561008 testis .b 447 to 1064 1 to 620       620/678
(91 %)
24 diff
(96.5 %id)
BC039268 testis .b 452 to 3980 1 to 3529 I217T R460S V842I tiling clone, available from MGC, AAA   3529/3529
(100 %)
4 diff
(99.9 %id)
DA801072 brain .b 454 to 1010 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BM829262 Ascites, stomach .b 454 to 1006 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
AK096157   .b 455 to 3452 1 to 2998   tiling clone, available from FLJ,   2998/2998
(100 %)
4 diff
(99.9 %id)
DA649672   .b 456 to 993 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA911747   .b 456 to 1030 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB071423 testis .b 456 to 1002 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB091197 testis .b 456 to 914 2 to 460   capped   459/459
(100 %)
2 diff
(99.6 %id)
DB097284 testis .b 456 to 1051 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
AK292399 testis .b 461 to 3980 1 to 3520 V299A R460S V842I     3520/3520
(100 %)
5 diff
(99.9 %id)
DB450888 testis .b 461 to 932 1 to 472       472/472
(100 %)
2 diff
(99.6 %id)
DB451661 testis .b 461 to 950 1 to 490       490/491
(99 %)
3 diff
(99.4 %id)
DA223529 brain .b 462 to 1018 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB060941 testis .b 462 to 1002 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB076641 testis .b 463 to 1036 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DN997112 breast cancer, Mammary gland (cancer tissue) .b 468 to 1117 1 to 650       650/650
(100 %)
6 diff
(99.1 %id)
DB076745 testis .b 469 to 1003 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
BU431639 lymph .b 476 to 846 8 to 378       371/378
(98 %)
6 diff
(98.5 %id)
TI_154153631   .b 476 to 1084 80 to 686       607/614
(98 %)
13 diff
(97.9 %id)
DA028050   .b 480 to 1050 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA456193 tongue, tumor tissue .b 480 to 1020 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB093854 testis .b 482 to 1041 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB206305 trachea .b 485 to 1062 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
BE786584 large cell carcinoma, lung .b 486 to 1258 1 to 769       769/955
(80 %)
48 diff
(95.0 %id)
AL705883 human skeletal muscle .b 504 to 1394 1 to 891   tiling clone,   891/892
(99 %)
8 diff
(99.2 %id)
DA889754   .b 508 to 1061 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BE784942 large cell carcinoma, lung .b 555 to 1303 69 to 829       761/875
(86 %)
61 diff
(93.1 %id)
TI_1948087658   .b 663 to 1586 130 to 1053       924/1357
(68 %)
17 diff
(98.8 %id)
TI_1948087825   .b 663 to 1671 126 to 1131       1006/1338
(75 %)
24 diff
(98.3 %id)
TI_1948088003   .b 663 to 1753 127 to 1204       1078/1312
(82 %)
49 diff
(96.3 %id)
TI_1948088179   .b 663 to 1584 137 to 1044       908/1297
(70 %)
30 diff
(97.7 %id)
CV024694 mixed .b 664 to 1312 1 to 649       649/650
(99 %)
3 diff
(99.6 %id)
AU142737   .b 1134 to 1867 2 to 735   capped   734/736
(99 %)
5 diff
(99.4 %id)
AK023998   .b 1135 to 3134 1 to 2000   available from FLJ,   2000/2000
(100 %)
4 diff
(99.8 %id)
BE143904 head_neck .b 1161 to 1475 1 to 315       315/315
(100 %)
6 diff
(98.1 %id)
BE143958 head_neck .b 1161 to 1475 1 to 315       315/315
(100 %)
6 diff
(98.1 %id)
BG743904 blood, natural killer cells, cell line .b 1232 to 2004 1 to 772       772/772
(100 %)
9 diff
(98.9 %id)
AF119318 melanoma .b 1456 to 1893 1 to 435       435/435
(100 %)
8 diff
(98.2 %id)
DB023053 testis .b 1682 to 2236 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
CV571473 cornea, eye .b 1747 to 1940 1 to 194       194/194
(100 %)
7 diff
(96.4 %id)
DN917708   .b 2178 to 2795 23 to 640       618/640
(96 %)
6 diff
(99.1 %id)
CN402546 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2180 to 2711 38 to 568       531/568
(93 %)
6 diff
(99.0 %id)
BU942845 mixed (pool of 40 RNAs) .b 2508 to 3183 1 to 681       681/738
(92 %)
11 diff
(98.6 %id)
TI_1948088004   .b 2509 to 3659 1280 to 128       1153/1281
(90 %)
0 diff
(100 %id)
AU159976   .b 2571 to 3134 558 to 1       558/560
(99 %)
16 diff
(97.2 %id)
TI_1948087826   .b 2646 to 3659 1141 to 126       1016/1277
(79 %)
0 diff
(100 %id)
TI_1948087659   .b 2687 to 3659 1095 to 128       968/1266
(76 %)
0 diff
(100 %id)
TI_1948088180   .b 2740 to 3659 1063 to 124       940/1370
(68 %)
0 diff
(100 %id)
BG744591 blood, natural killer cells, cell line .b 3131 to 3917 817 to 21       797/948
(84 %)
21 diff
(97.8 %id)
DB233596 trachea .c 1 to 583 2 to 584   tiling clone, capped   583/583
(100 %)
3 diff
(99.5 %id)
AK297366 brain .c 32 to 3277 1 to 3246   tiling clone,   3246/3246
(100 %)
1 diff
(100.0 %id)
DA501977 brain .c 33 to 582 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
AU253903 neuroblastoma .c 1580 to 2216 1 to 636       636/646
(98 %)
5 diff
(99.3 %id)
DA603758   .c 1835 to 2349 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
CF145566 CNCAP(3)T-225 cell line, Prostate .c 1907 to 2602 8 to 705       698/705
(99 %)
6 diff
(99.2 %id)
TI_154177810   .c 1907 to 2673 69 to 834       766/894
(85 %)
14 diff
(98.5 %id)
AA337121 endometrium .c 1985 to 2299 1 to 316       316/316
(100 %)
1 diff
(99.7 %id)
CN402545 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 2035 to 2769 1 to 734       734/734
(100 %)
5 diff
(99.4 %id)
BF130671 hypernephroma, Kidney .c 2207 to 2858 1 to 636       636/869
(73 %)
38 diff
(95.7 %id)
H88067 cochlea, ear .c 2330 to 2628 1 to 305       305/325
(93 %)
8 diff
(97.6 %id)
AA477171 ovarian tumor, ovary .c 2368 to 2612 1 to 245       245/245
(100 %)
0 diff
(100 %id)
BE541386 cervix .c 2387 to 3133 1 to 740       740/1018
(72 %)
26 diff
(97.5 %id)
AW811969 stomach .c 2547 to 2739 212 to 20       193/212
(91 %)
0 diff
(100 %id)
TI_154100397   .c 2588 to 3277 769 to 81   AAA   689/689
(100 %)
4 diff
(99.5 %id)
CR613676 HeLa cells Cot 25-normalized .c 2597 to 3281 1 to 685   tiling clone,   685/685
(100 %)
0 diff
(100 %id)
BX363121   .c 2606 to 3281 12 to 687       676/687
(98 %)
6 diff
(99.2 %id)
BX365622   .c 2606 to 3281 12 to 687       676/687
(98 %)
6 diff
(99.2 %id)
AU253904 neuroblastoma .c 2619 to 3281 700 to 36       665/700
(95 %)
0 diff
(100 %id)
CA441300 Fibrosarcoma .c 2631 to 3277 665 to 19   AAA   647/647
(100 %)
3 diff
(99.6 %id)
CN402547 embryonic stem cells, DMSO-treated H9 cellline .c 2683 to 3268 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DN917709   .c 2698 to 3272 571 to 1       571/575
(99 %)
5 diff
(99.2 %id)
BF343258 brain, glioblastoma with EGFR amplification .c 2703 to 3277 1 to 575   AAA   575/575
(100 %)
1 diff
(99.9 %id)
AW976789   .c 2739 to 3276 538 to 1     Submitted on the opposite strand 538/538
(100 %)
3 diff
(99.5 %id)
AW451973   .c 2750 to 3277 545 to 18   AAA   528/528
(100 %)
13 diff
(97.6 %id)
AI766808 2 pooled tumors (clear cell type), Kidney .c 2769 to 3281 515 to 3       513/515
(99 %)
0 diff
(100 %id)
AI376202   .c 2808 to 3281 479 to 6       474/479
(98 %)
0 diff
(100 %id)
DB519526 testis .c 2824 to 3277 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
AA760752 germinal center B cell .c 2824 to 3281 463 to 6       458/463
(98 %)
0 diff
(100 %id)
DB516378 testis .c 2826 to 3277 1 to 452     Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
DB526364 testis .c 2827 to 3277 1 to 451     Submitted on the opposite strand 451/451
(100 %)
1 diff
(99.8 %id)
H88069 cochlea, ear .c 2830 to 3242 415 to 1       415/415
(100 %)
16 diff
(96.2 %id)
BM801263 embryonal carcinoma, cell line, testis .c 2831 to 3152 1 to 319       319/980
(32 %)
10 diff
(99.0 %id)
AA781175   .c 2841 to 3280 440 to 1       440/440
(100 %)
0 diff
(100 %id)
AW872975 adrenal gland, neuroblastoma .c 2855 to 3277 433 to 11   AAA   423/423
(100 %)
0 diff
(100 %id)
AW173607 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2856 to 3277 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
AA992090   .c 2868 to 3280 413 to 1       413/413
(100 %)
0 diff
(100 %id)
BF478106 pooled germ cell tumors .c 2872 to 3277 406 to 1       406/406
(100 %)
0 diff
(100 %id)
DB507902 testis .c 2878 to 3277 7 to 406     Submitted on the opposite strand 400/406
(98 %)
6 diff
(98.6 %id)
AI654796 pooled germ cell tumors .c 2897 to 3277 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AA946869 2 pooled tumors (clear cell type), Kidney .c 2905 to 3281 377 to 1       377/377
(100 %)
0 diff
(100 %id)
BF509300   .c 2950 to 3277 345 to 18   AAA   328/328
(100 %)
2 diff
(99.4 %id)
DB517143 testis .c 3047 to 3277 56 to 287     Submitted on the opposite strand 232/287
(80 %)
6 diff
(98.0 %id)
AW515075 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 3091 to 3281 191 to 1       191/191
(100 %)
1 diff
(99.5 %id)
AW664845 pooled .c 3098 to 3280 183 to 1       183/183
(100 %)
0 diff
(100 %id)
AA479666 ovarian tumor, ovary .c 3121 to 3277 157 to 1       157/157
(100 %)
4 diff
(97.5 %id)
BX370517   .c 3147 to 3281 1 to 135       135/136
(99 %)
1 diff
(99.3 %id)
FN046933 breast carcinoma .c 3194 to 3277 1 to 84       84/84
(100 %)
0 diff
(100 %id)
AK058145 testis .d 1 to 1830 1 to 1830 H153R tiling clone, available from FLJ,   1830/1830
(100 %)
1 diff
(100.0 %id)
BP369821 testis .d 2 to 558 1 to 556       556/556
(100 %)
6 diff
(99.0 %id)
CN288406 embryonic stem cells, cell lines H1, H7, andH9 .d 483 to 818 1 to 336       336/336
(100 %)
1 diff
(99.8 %id)
DA932057 Spleen .e 1 to 573 2 to 574 exact tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
DB067553 testis .f 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DB084892 testis .f 2 to 551 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB067048 testis .g 1 to 536 2 to 536   tiling clone, capped   535/535
(100 %)
2 diff
(99.7 %id)
DC402244 testis .g 45 to 607 1 to 563 exact tiling clone,   563/563
(100 %)
1 diff
(99.9 %id)
AK299581 brain .h 1 to 962 1 to 962 exact tiling clone,   962/962
(100 %)
2 diff
(99.8 %id)
DC374986 brain .h 1 to 582 1 to 582 exact     582/582
(100 %)
2 diff
(99.7 %id)
CD653549 Embryonic Stem cells .h 192 to 973 13 to 793 exact tiling clone,   781/793
(98 %)
7 diff
(99.2 %id)
BP870602 embryonal kidney .i 1 to 332 1 to 332 exact tiling clone,   332/332
(100 %)
2 diff
(99.4 %id)
BX281017 Bone, osteosarcoma, cell line Gene C11orf82andRPL7AP54, variant not shown         Suspected internal deletion, this clone was ignored    
BG026256 Bone, osteosarcoma, cell line Gene C11orf82andRPL7AP54, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C