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Gene SPEF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
110 supporting clones for gene SPEF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_024867.3   .a 1 to 5637 1 to 5637 exact RefSeq, AAA   5637/5637
(100 %)
0 diff
(100 %id)
DA956767 Spleen .a 10 to 552 2 to 544   tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
DA532529 brain .a 12 to 594 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
TI_1959501437   .a 15 to 837 841 to 18       825/1294
(63 %)
0 diff
(100 %id)
TI_1959503215   .a 15 to 1188 62 to 1225   tiling clone, Submitted on the opposite strand 1164/1287
(90 %)
24 diff
(98.2 %id)
TI_1959502835   .a 15 to 1068 49 to 1093       1045/1291
(80 %)
19 diff
(98.6 %id)
DA045378 bladder .a 15 to 587 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BX642562   .a 28 to 385 1 to 357       357/357
(100 %)
3 diff
(99.2 %id)
BG574840 breast, mammary adenocarcinoma, cell line .a 45 to 826 1 to 785       785/790
(99 %)
19 diff
(97.6 %id)
BX472002   .a 49 to 580 1 to 532       532/532
(100 %)
7 diff
(98.7 %id)
BP369614 testis .a 76 to 638 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DA294792 hippocampus .a 77 to 566 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
TI_43963183   .a 79 to 838 61 to 815       755/1013
(74 %)
15 diff
(98.6 %id)
BI520300 brain, medulla .a 86 to 838 1 to 748       748/946
(79 %)
10 diff
(99.0 %id)
FN141372 breast carcinoma .a 142 to 244 103 to 1     Submitted on the opposite strand 103/103
(100 %)
1 diff
(99.1 %id)
BF903675 marrow .a 333 to 691 1 to 359       359/359
(100 %)
13 diff
(96.4 %id)
TI_1959499697   .a 441 to 1564 1 to 1116   tiling clone,   1116/1270
(87 %)
17 diff
(98.7 %id)
FN138390 breast carcinoma .a 483 to 582 100 to 1     Submitted on the opposite strand 100/104
(96 %)
0 diff
(100 %id)
AL037770 brain .a 699 to 821 1 to 123       123/124
(99 %)
7 diff
(94.4 %id)
TI_43963184   .a 901 to 1631 780 to 11       766/1089
(70 %)
57 diff
(94.8 %id)
FN135921 breast carcinoma .a 971 to 1082 1 to 110       110/110
(100 %)
3 diff
(97.3 %id)
DA829750 placenta .a 1134 to 1958 2 to 831   tiling clone, capped   830/831
(99 %)
19 diff
(97.8 %id)
DA105554 cerebellum .a 1195 to 1766 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BP376173 uterus .a 1311 to 1853 1 to 545   tiling clone,   545/579
(94 %)
4 diff
(99.4 %id)
FN124011 breast carcinoma .a 2085 to 2148 15 to 78   tiling clone,   64/79
(81 %)
1 diff
(98.8 %id)
DB374675 placenta .a 2249 to 2759 509 to 1   tiling clone,   509/525
(96 %)
5 diff
(99.1 %id)
DB317751 brain .a 2254 to 2759 506 to 1   tiling clone,   506/507
(99 %)
2 diff
(99.7 %id)
DA161081 amygdala .a 2296 to 2873 2 to 581   capped   580/580
(100 %)
4 diff
(99.4 %id)
DB125028 thymus .a 2333 to 2909 2 to 579   tiling clone, capped   578/578
(100 %)
2 diff
(99.7 %id)
TI_159723286   .a 3327 to 3970 694 to 52       643/1100
(58 %)
1 diff
(100.0 %id)
CA944963 Human Lung Epithelial cells, lung .a 3327 to 3959 635 to 3   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 633/643
(98 %)
1 diff
(99.9 %id)
AK027230 Human lung .a 3555 to 5623 1 to 2069   tiling clone, available from FLJ, AAA   2069/2069
(100 %)
5 diff
(99.8 %id)
AK225586 lung .a 3555 to 5623 1 to 2069       2069/2069
(100 %)
5 diff
(99.8 %id)
AK225607 lung .a 3555 to 5623 1 to 2069   AAA   2069/2069
(100 %)
5 diff
(99.8 %id)
BP293260 lung .a 3555 to 4133 1 to 579       579/579
(100 %)
4 diff
(99.4 %id)
TI_149299423   .a 4849 to 5637 882 to 95   tiling clone, AAA   788/970
(81 %)
15 diff
(98.5 %id)
BM975758 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 4949 to 5637 708 to 19   AAA   690/690
(100 %)
1 diff
(99.9 %id)
AI979232 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5135 to 5629 497 to 2       496/497
(99 %)
1 diff
(99.8 %id)
TI_149280525   .a 5144 to 5637 573 to 79   AAA   495/708
(69 %)
1 diff
(99.9 %id)
TI_149280537   .a 5144 to 5637 579 to 85   AAA   495/708
(69 %)
1 diff
(99.9 %id)
BU679282 lung, Primary Lung Epithelial Cells .a 5144 to 5637 513 to 19   AAA   495/578
(85 %)
1 diff
(99.9 %id)
BU679291 lung, Primary Lung Epithelial Cells .a 5144 to 5637 513 to 19   AAA   495/578
(85 %)
1 diff
(99.9 %id)
AI559708 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5256 to 5637 382 to 1   tiling clone,   382/382
(100 %)
0 diff
(100 %id)
AW273539 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 5275 to 5638 367 to 4   tiling clone,   364/367
(99 %)
0 diff
(100 %id)
BX110758 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5332 to 5636 319 to 15   AAA   305/305
(100 %)
0 diff
(100 %id)
AK097547 testis .b 1 to 1499 2 to 1500   tiling clone, available from FLJ,   1500/1500
(100 %)
2 diff
(99.9 %id)
DB036801 testis .b 1 to 577 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
AB051557   .b 400 to 4632 1 to 4233   tiling clone, available from KIAA,   4233/4233
(100 %)
3 diff
(100.0 %id)
DB337499 testis .b 966 to 1499 534 to 1       534/534
(100 %)
0 diff
(100 %id)
AI809390 pooled .b 4149 to 4618 491 to 22       470/491
(95 %)
0 diff
(100 %id)
AI277977 placenta .b 4375 to 4826 474 to 23   tiling clone, AAA   452/452
(100 %)
2 diff
(99.6 %id)
EF553528 uterus .c 1 to 4614 1 to 4611 N71H D192G R201G K239R E240G ... tiling clone, AAA   4611/4611
(100 %)
32 diff
(99.4 %id)
DB065251 testis .c 1480 to 2026 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DN998154 breast cancer, Mammary gland (cancer tissue) .c 1518 to 2103 9 to 595   tiling clone,   587/595
(98 %)
7 diff
(98.9 %id)
AK094564 amygdala .c 1917 to 4324 1 to 2408   tiling clone, available from FLJ,   2408/2408
(100 %)
13 diff
(99.5 %id)
DA148278 amygdala .c 1918 to 2495 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA295300 hippocampus .c 2321 to 2895 2 to 577   tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
DA275299 corpus callosum .c 2399 to 2951 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
AA298851 thyroid gland .c 2731 to 2990 1 to 260       260/263
(98 %)
3 diff
(98.9 %id)
CR739552 multiple sclerosis lesions .c 3532 to 4210 30 to 709       680/714
(95 %)
11 diff
(98.5 %id)
DB301578 amygdala .c 3790 to 4324 536 to 1       536/536
(100 %)
5 diff
(99.1 %id)
CV409889 nervous_normal .c 3896 to 4033 1 to 138   tiling clone,   138/143
(96 %)
5 diff
(96.6 %id)
EL949424 eyeball .c 4087 to 4591 1 to 507       507/507
(100 %)
17 diff
(96.7 %id)
BQ023272 placenta .c 4134 to 4614 499 to 19   tiling clone, AAA   481/481
(100 %)
0 diff
(100 %id)
BE139636 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 4308 to 4617 315 to 5       311/315
(98 %)
0 diff
(100 %id)
AI765082 Kidney .c 4324 to 4614 318 to 27   AAA   292/292
(100 %)
9 diff
(97.0 %id)
N59137 multiple sclerosis lesions .c 4340 to 4614 291 to 15   AAA   277/277
(100 %)
4 diff
(98.6 %id)
BX648691 human testis .d 1 to 3145 1 to 3145 F279S H378Y T812A tiling clone, available from DKFZ, AAA   3145/3145
(100 %)
4 diff
(99.9 %id)
AW892986 nervous_normal .d 1820 to 2018 201 to 5       197/206
(95 %)
8 diff
(96.2 %id)
AK026817 Human lung .e 1 to 2141 1 to 2141 D495G tiling clone, available from FLJ, AAA   2141/2141
(100 %)
2 diff
(100.0 %id)
BI561473 testis .f 1 to 739 1 to 738   tiling clone, available from MGC,   738/738
(100 %)
8 diff
(99.0 %id)
BC067761 testis .f 6 to 1800 1 to 1796 E168G M234N M235D K236E K238E ... available from MGC, AAA   1796/1796
(100 %)
3 diff
(99.9 %id)
TI_44350692   .f 6 to 739 119 to 851       733/851
(86 %)
10 diff
(98.9 %id)
BM804929 ovary (pool of 3) .f 41 to 892 108 to 962       855/1077
(79 %)
22 diff
(98.0 %id)
BC016773 Bladder, carcinoma .f 45 to 1374 1 to 1327   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1327/1349
(98 %)
10 diff
(99.3 %id)
NM_144722.3   .f 49 to 3030 1 to 2982 exact RefSeq,   2982/2982
(100 %)
0 diff
(100 %id)
AK058124 testis .f 124 to 1742 1 to 1619 exact tiling clone, available from FLJ,   1619/1619
(100 %)
0 diff
(100 %id)
BC110984 Brain, adult medulla .f 134 to 1742 1 to 1609 N71H D500N AAA   1609/1609
(100 %)
4 diff
(99.8 %id)
CA430816 cell lines, Chondrosarcoma .f 1064 to 1736 691 to 19   AAA   673/673
(100 %)
1 diff
(99.9 %id)
TI_1959499703   .f 1136 to 2267 9 to 1127       1119/1251
(89 %)
61 diff
(95.2 %id)
TI_1959501439   .f 1153 to 2392 1236 to 5       1232/1288
(95 %)
16 diff
(98.8 %id)
TI_1959501433   .f 1169 to 2394 1212 to 2       1211/1281
(94 %)
17 diff
(98.7 %id)
TI_1959498945   .f 1325 to 2447 1195 to 78       1118/1297
(86 %)
13 diff
(99.0 %id)
TI_1959502833   .f 1331 to 2449 1162 to 54   tiling clone, Submitted on the opposite strand 1109/1291
(85 %)
10 diff
(99.3 %id)
TI_1959503217   .f 1371 to 2447 1141 to 69       1073/1271
(84 %)
4 diff
(99.7 %id)
TI_1959498929   .f 1373 to 2449 1127 to 56     Submitted on the opposite strand 1072/1265
(84 %)
6 diff
(99.6 %id)
TI_1959499699   .f 1589 to 2447 4 to 860       857/1244
(68 %)
8 diff
(99.4 %id)
AA328954   .f 1709 to 2114 1 to 412       412/415
(99 %)
9 diff
(97.9 %id)
CB955825 Pooled-Glandular .f 2041 to 2774 1 to 743   tiling clone,   743/751
(98 %)
17 diff
(97.8 %id)
TI_1959499705   .f 2127 to 2447 1 to 319       319/1315
(24 %)
5 diff
(99.7 %id)
BQ576090 Chondrosarcoma Grade II, Left Pelvis .f 2451 to 3030 598 to 19   tiling clone, AAA   580/580
(100 %)
0 diff
(100 %id)
AW768842 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .f 2659 to 3030 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AL832607 human spinal cord .g 1 to 6258 29 to 6286 L112X L405F L406V tiling clone, available from DKFZ, AAA   6258/6258
(100 %)
29 diff
(99.6 %id)
DN992139 brain, whole brain .h 1 to 599 1 to 599   tiling clone,   599/599
(100 %)
3 diff
(99.5 %id)
CX785462 human embryonic stem cells .h 35 to 805 1 to 770 N71H tiling clone,   770/770
(100 %)
3 diff
(99.7 %id)
DR003618 hippocampus .i 1 to 664 16 to 677 N71H tiling clone,   669/678
(98 %)
13 diff
(98.1 %id)
BP271326 small intestine .j 1 to 583 1 to 583 N71H tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
CA503404 Human Lung Epithelial cells, lung .k 1 to 655 50 to 704 P2V A14P tiling clone, Submitted on the opposite strand 655/699
(93 %)
8 diff
(98.9 %id)
W27682 eye, retina .l 1 to 382 406 to 24 K2N L9X L17Q S39X A59X ... tiling clone,   383/438
(87 %)
2 diff
(99.6 %id)
AI631784 Kidney .m 1 to 435 438 to 4 exact tiling clone,   435/438
(99 %)
0 diff
(100 %id)
AA243761 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1 to 521 16 to 536   tiling clone,   521/536
(97 %)
6 diff
(98.9 %id)
AW516107 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .n 327 to 795 469 to 1   tiling clone,   469/469
(100 %)
0 diff
(100 %id)
AW243784 serous papillary carcinoma, high grade, 2pooled tumors, uterus .n 405 to 789 385 to 1       385/385
(100 %)
0 diff
(100 %id)
AA243642 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 540 to 1001 462 to 1 exact tiling clone,   462/462
(100 %)
1 diff
(99.8 %id)
DA318017 hippocampus .o 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DA402351 thalamus .o 385 to 929 2 to 546   tiling clone, capped   545/546
(99 %)
3 diff
(99.5 %id)
DB312220 thalamus .o 3243 to 3779 538 to 1   tiling clone,   538/548
(98 %)
2 diff
(99.7 %id)
BI464107 testis .p 1 to 726 1 to 746 E13G A14G D15P E16M L18T ... tiling clone,   746/787
(94 %)
52 diff
(93.4 %id)
CN280320 embryonic stem cells, DMSO-treated H9 cellline .q-u 1 to 352 1 to 352   tiling clone,   352/352
(100 %)
0 diff
(100 %id)
CN280321 embryonic stem cells, DMSO-treated H9 cellline .q-u 106 to 618 1 to 513 exact tiling clone,   513/513
(100 %)
1 diff
(99.9 %id)
DB307462 corpus callosum Gene SPEF2, variant not shown         This clone was ignored    
DA285888 corpus callosum Gene SPEF2, variant not shown       capped This clone was ignored    
BU685390 lung, Primary Lung Epithelial Cells Gene SPEF2, variant not shown       AAA This clone was ignored    
TI_1959501435   Gene SPEF2, variant not shown         This clone was ignored    
H85356 eye, retina Gene SPEF2, variant not shown         This clone was ignored    
H85823 eye, retina Gene SPEF2, variant not shown         This clone was ignored    
TI_149281212   Gene SPEF2, variant not shown       AAA This clone was ignored    
TI_149304486   Gene SPEF2, variant not shown       AAA This clone was ignored    
DB214696 trachea Gene SPEF2, variant not shown       capped This clone was ignored    
DB348983 trachea Gene SPEF2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C