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Gene C1orf54TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
94 supporting clones for gene C1orf54 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA398859   .a 1 to 472 1 to 470   tiling clone, fully sequenced,   470/470
(100 %)
2 diff
(99.6 %id)
BF512797   .a 76 to 641 579 to 14 exact AAA   566/566
(100 %)
0 diff
(100 %id)
AA824370   .a 97 to 643 549 to 3 exact     547/549
(99 %)
0 diff
(100 %id)
AX770998   .a 97 to 643 1 to 547 exact tiling clone,   547/549
(99 %)
1 diff
(99.9 %id)
BQ000937 lung, Metastatic Chondrosarcoma .a 121 to 641 536 to 15 exact AAA   522/534
(97 %)
4 diff
(99.3 %id)
CA437218 lung, Metastatic Chondrosarcoma .a 121 to 641 535 to 15 exact AAA   521/533
(97 %)
3 diff
(99.5 %id)
BP231264 muscle .a 137 to 563 1 to 425 E75D T76Y T77H I78*     425/440
(96 %)
2 diff
(99.6 %id)
FN067242 breast carcinoma .a 137 to 198 61 to 1     Submitted on the opposite strand 61/62
(98 %)
1 diff
(98.4 %id)
BX090751 liver and spleen .a 138 to 637 1 to 500 exact AAA   500/500
(100 %)
0 diff
(100 %id)
T98462 liver and spleen .a 139 to 410 1 to 285   fully sequenced,   281/281
(100 %)
10 diff
(96.5 %id)
AA027213 heart .a 139 to 320 1 to 182   fully sequenced,   182/182
(100 %)
0 diff
(100 %id)
AI401045 Prostate .a 143 to 641 499 to 1 exact     499/499
(100 %)
0 diff
(100 %id)
AA447925   .a 148 to 620 1 to 470 P12H I14S L15W G16D Q17K ... fully sequenced,   470/470
(100 %)
3 diff
(99.4 %id)
CB052624.
matches multiple genes
leiomyosarcoma, soft tissue .a 151 to 641 20 to 510 exact AAA also hits gene ATP5G3 491/510
(96 %)
6 diff
(98.9 %id)
W17259 lung .a 157 to 636 1 to 477 P115X F131S fully sequenced,   477/477
(100 %)
9 diff
(98.2 %id)
W17346 lung .a 157 to 638 1 to 481 F131X fully sequenced,   481/481
(100 %)
1 diff
(99.8 %id)
AI192974 lung .a 157 to 642 486 to 1 exact     486/495
(98 %)
0 diff
(100 %id)
AA401790   .a 158 to 582 1 to 424 L4S F5L V6*     424/424
(100 %)
1 diff
(99.8 %id)
W68383 heart .a 161 to 523 1 to 364   fully sequenced,   364/364
(100 %)
5 diff
(98.7 %id)
AI708684 aorta .a 177 to 637 461 to 1       461/461
(100 %)
0 diff
(100 %id)
AI370929 brain, glioblastoma (pooled) .a 180 to 637 458 to 1       458/458
(100 %)
0 diff
(100 %id)
AI718029 aorta .a 180 to 632 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AI015595 Kidney .a 188 to 637 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AI401211 brain, glioblastoma (pooled) .a 196 to 637 442 to 1       442/442
(100 %)
0 diff
(100 %id)
AW055109 brain, glioblastoma (pooled) .a 196 to 637 442 to 1       442/442
(100 %)
0 diff
(100 %id)
AW043992 brain, glioblastoma (pooled) .a 205 to 637 435 to 1       435/439
(99 %)
4 diff
(99.1 %id)
N83630   .a 208 to 465 1 to 254       254/302
(84 %)
7 diff
(97.7 %id)
AI077370 liver and spleen .a 222 to 641 420 to 1       420/420
(100 %)
0 diff
(100 %id)
W25674 lung .a 227 to 521 28 to 325       298/326
(91 %)
13 diff
(96.1 %id)
AA991266 breast .a 256 to 658 405 to 3   tiling clone,   403/405
(99 %)
0 diff
(100 %id)
AA027214 heart .a 259 to 639 384 to 1   fully sequenced,   384/384
(100 %)
5 diff
(98.7 %id)
AA862620 Kidney .a 259 to 637 379 to 1       379/379
(100 %)
0 diff
(100 %id)
AI306612 2 pooled tumors (clear cell type), Kidney .a 272 to 643 376 to 5       372/376
(98 %)
0 diff
(100 %id)
AW044644 pooled .a 272 to 641 393 to 24   AAA   370/370
(100 %)
10 diff
(97.3 %id)
AA626315   .a 304 to 643 341 to 2       340/341
(99 %)
0 diff
(100 %id)
FN046938 breast carcinoma .a 352 to 418 1 to 67       67/68
(98 %)
1 diff
(98.6 %id)
AA652731 normal prostate, Prostate .a 363 to 615 253 to 1       253/253
(100 %)
0 diff
(100 %id)
T98518 liver and spleen .a 380 to 637 261 to 1   fully sequenced,   261/261
(100 %)
3 diff
(98.9 %id)
FN076856 breast carcinoma .a 411 to 511 1 to 101       101/101
(100 %)
0 diff
(100 %id)
N78829 lung .a 429 to 641 213 to 1   fully sequenced,   213/213
(100 %)
0 diff
(100 %id)
N78952 lung .a 429 to 642 214 to 1   fully sequenced,   214/214
(100 %)
0 diff
(100 %id)
AA435896   .a 429 to 637 225 to 17   fully sequenced, AAA   209/209
(100 %)
0 diff
(100 %id)
AA448861   .a 429 to 641 213 to 1   fully sequenced,   213/213
(100 %)
0 diff
(100 %id)
W68342 heart .a 493 to 640 149 to 2   fully sequenced,   148/149
(99 %)
0 diff
(100 %id)
FN045935 breast carcinoma .a 536 to 605 70 to 1     Submitted on the opposite strand 70/71
(98 %)
0 diff
(100 %id)
CF131058 Chondrosarcoma Lung Metastasis cell lines, lung .b 1 to 778 1 to 779   tiling clone,   779/779
(100 %)
10 diff
(98.8 %id)
TI_154194497   .b 1 to 894 52 to 944       893/1071
(83 %)
20 diff
(98.2 %id)
BM701990 eye, optic nerve .b 42 to 675 1 to 634   tiling clone,   634/634
(100 %)
0 diff
(100 %id)
CD369928 Alveolar Macrophage, lung .b 349 to 978 642 to 15 T77P A107P A122P AAA   628/631
(99 %)
5 diff
(99.3 %id)
BU729654.
matches multiple genes
eye, optic nerve .b 406 to 978 587 to 15 A7P AAA also hits gene ISCA1andC9orf153andGOLM1 573/573
(100 %)
1 diff
(99.9 %id)
NM_024579.3   .b 462 to 987 1 to 526 exact RefSeq, AAA   526/526
(100 %)
0 diff
(100 %id)
AX770997   .b 464 to 981 1 to 518 exact tiling clone,   518/521
(99 %)
1 diff
(99.9 %id)
AW005929 anaplastic oligodendroglioma, brain .b 464 to 981 521 to 4 exact     518/521
(99 %)
0 diff
(100 %id)
BG484093 lung .b 476 to 938 1 to 463 L111M F123S     463/463
(100 %)
4 diff
(99.2 %id)
BP382751 adipose tissue .b 477 to 980 1 to 504 E20D D21Y C121R     504/550
(91 %)
8 diff
(98.6 %id)
AK026874 adipose tissue .b 477 to 974 1 to 498 C121R available from FLJ, AAA   498/498
(100 %)
1 diff
(99.8 %id)
BC017761 lung .b 477 to 957 1 to 481 exact available from MGC, AAA   481/481
(100 %)
1 diff
(99.8 %id)
BP301917   .b 477 to 979 1 to 503 V11E L25P Y54H E60*     503/563
(89 %)
16 diff
(97.2 %id)
BP302009   .b 477 to 978 1 to 502 L25P Y54H AAA   502/502
(100 %)
2 diff
(99.7 %id)
TI_1948219707   .b 492 to 897 118 to 523 Y129S F130L M131V fully sequenced,   406/523
(77 %)
14 diff
(97.4 %id)
TI_1948220293   .b 492 to 892 121 to 521       401/1313
(30 %)
11 diff
(99.2 %id)
EL735495 mixed .b 500 to 894 1 to 395       395/553
(71 %)
3 diff
(99.5 %id)
TI_1948220581   .b 500 to 894 138 to 532       395/1408
(28 %)
11 diff
(99.3 %id)
AI092949 heart .b 532 to 980 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AI147031 heart .b 535 to 980 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
AI333236 lung .b 545 to 980 438 to 2       437/439
(99 %)
1 diff
(99.8 %id)
AI498880 anaplastic oligodendroglioma, brain .b 550 to 981 435 to 4       432/435
(99 %)
0 diff
(100 %id)
BM689122 eye, optic nerve .b 592 to 978 1 to 387       387/387
(100 %)
3 diff
(99.3 %id)
TI_1948219708   .b 599 to 894 425 to 130   fully sequenced,   296/324
(91 %)
0 diff
(100 %id)
AI201717 anaplastic oligodendroglioma, brain .b 612 to 981 374 to 5       370/374
(98 %)
0 diff
(100 %id)
AI376391   .b 612 to 978 390 to 24   AAA   367/367
(100 %)
2 diff
(99.5 %id)
AA724792 parathyroid gland, parathyroid tumor .b 674 to 980 314 to 8       307/314
(97 %)
0 diff
(100 %id)
AI004135   .b 724 to 987 281 to 18   tiling clone, AAA   264/264
(100 %)
0 diff
(100 %id)
FN163984 breast carcinoma .b 737 to 840 1 to 106       106/106
(100 %)
2 diff
(98.2 %id)
BG220677   .b 802 to 980 1 to 179       179/201
(89 %)
1 diff
(99.6 %id)
FN075849 breast carcinoma .b 925 to 975 1 to 51       51/52
(98 %)
1 diff
(98.1 %id)
AI143531 heart .c 14 to 401 388 to 1 G116E tiling clone,   388/388
(100 %)
1 diff
(99.8 %id)
AX770999   .c 66 to 399 85 to 418 exact tiling clone,   418/418
(100 %)
0 diff
(100 %id)
AI342055 pooled germ cell tumors .c 66 to 399 334 to 1 exact     418/418
(100 %)
0 diff
(100 %id)
DA358536 subthalamic nucleus .d -9 to 531 2 to 542 exact tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DB070724 testis .e 1 to 544 2 to 545   tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
T82829 liver and spleen .e 291 to 605 1 to 317   tiling clone,   317/378
(83 %)
3 diff
(99.3 %id)
DW421403 Liver .e 613 to 899 10 to 296   tiling clone,   287/297
(96 %)
9 diff
(97.0 %id)
T90008 liver and spleen .e 649 to 999 361 to 1   tiling clone,   361/362
(99 %)
16 diff
(95.6 %id)
BQ707410 Spleen .e 902 to 1592 1 to 693   tiling clone,   693/693
(100 %)
2 diff
(99.8 %id)
DW429569 Liver .e 1204 to 1586 17 to 399       383/400
(95 %)
1 diff
(99.8 %id)
W93038 heart .f 1 to 378 381 to 3 S76E L77F R78A S79K P80S ... tiling clone,   379/381
(99 %)
1 diff
(99.8 %id)
AA878662 2 pooled tumors (clear cell type), Kidney .g 1 to 260 262 to 3 A41D tiling clone,   260/262
(99 %)
1 diff
(99.7 %id)
DW409673 Liver .h-u 1 to 321 17 to 337   tiling clone,   321/337
(95 %)
6 diff
(98.3 %id)
DA179668 amygdala .h-u 18 to 328 2 to 312   tiling clone, to resequence, capped   311/311
(100 %)
2 diff
(99.4 %id)
BG506817 lung .h-u 146 to 788 1 to 651   tiling clone,   651/822
(79 %)
21 diff
(97.5 %id)
BQ718781 dorsal root ganglia .h-u 406 to 1223 1 to 827   tiling clone,   827/973
(84 %)
25 diff
(97.5 %id)
CN314976 embryonic stem cells, cell lines H1, H7, andH9 .h-u 516 to 1081 1 to 566   tiling clone,   566/566
(100 %)
2 diff
(99.7 %id)
BX098649 liver and spleen .h-u 771 to 1424 1 to 653   tiling clone, AAA   653/653
(100 %)
3 diff
(99.6 %id)
R07662 liver and spleen .h-u 772 to 1103 1 to 333   fully sequenced,   333/333
(100 %)
6 diff
(98.2 %id)
R07618 liver and spleen .h-u 1073 to 1424 352 to 1   tiling clone, fully sequenced,   352/352
(100 %)
7 diff
(98.1 %id)
BU622462 cell lines, Chondrosarcoma .h-u 1660 to 2283 641 to 19 exact tiling clone, AAA   623/623
(100 %)
2 diff
(99.7 %id)
DB302880 amygdala .h-u 1713 to 2283 571 to 1 exact tiling clone, to resequence,   571/571
(100 %)
0 diff
(100 %id)
AW340828 serous papillary carcinoma, high grade, 2pooled tumors, uterus .h-u 1814 to 2285 476 to 5   tiling clone,   472/476
(99 %)
0 diff
(100 %id)
AW860221 colon .h-u 2097 to 2213 1 to 119       119/119
(100 %)
6 diff
(95.0 %id)
DA937669 Spleen .i 1 to 602 2 to 603   tiling clone, capped   602/602
(100 %)
1 diff
(99.9 %id)
CD702411 normal nasopharynx .i 18 to 333 24 to 338       315/338
(93 %)
6 diff
(98.3 %id)
DA929256 small intestine .i 62 to 609 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
AA095731   Gene C1orf54, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AA070633   Gene C1orf54, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes