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Gene C2orf54TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
56 supporting clones for gene C2orf54 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK056601 tongue .a 1 to 1899 5 to 1903 L309P tiling clone, available from FLJ,   1903/1903
(100 %)
3 diff
(99.9 %id)
NM_001085437.1   .a 1 to 2521 5 to 2525 exact RefSeq,   2525/2525
(100 %)
0 diff
(100 %id)
DA585915 lung .a 1 to 543 5 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA668843 esophagus .a 1 to 546 5 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA761535 tongue .a 1 to 457 5 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DB013060 esophageal, tumor tissue .a 1 to 563 5 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB217836 trachea .a 1 to 521 5 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA586346 lung .a 1 to 599 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA667472 esophagus .a 1 to 563 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA667607 esophagus .a 1 to 572 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA668363 esophagus .a 1 to 549 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA669002 esophagus .a 1 to 549 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA762380 tongue .a 1 to 577 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA765053 tongue .a 1 to 573 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA767374 tongue .a 1 to 574 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DB012468 esophageal, tumor tissue .a 1 to 457 2 to 460   capped   459/459
(100 %)
4 diff
(99.2 %id)
DB012850 esophageal, tumor tissue .a 1 to 564 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB013143 esophageal, tumor tissue .a 1 to 569 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB014065 esophageal, tumor tissue .a 1 to 556 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB016951 esophageal, tumor tissue .a 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB018510 esophageal, tumor tissue .a 1 to 450 2 to 452   capped   451/451
(100 %)
1 diff
(99.8 %id)
DA626445 Kidney .a 273 to 831 2 to 560   capped   559/560
(99 %)
2 diff
(99.7 %id)
BI115841 lung, small cell carcinoma .a 518 to 1202 1 to 685       685/688
(99 %)
8 diff
(98.9 %id)
BM856865 stomach .a 908 to 1250 1 to 342       342/342
(100 %)
3 diff
(99.2 %id)
DB325331 tongue .a 1370 to 1899 532 to 1       532/532
(100 %)
4 diff
(99.3 %id)
BG697425 skin .a 1444 to 2211 1 to 760   tiling clone,   760/760
(100 %)
12 diff
(98.5 %id)
BU944778 adenocarcinoma, cell line, breast .a 1624 to 2368 1 to 749   tiling clone,   749/861
(86 %)
8 diff
(99.1 %id)
AA419311 ovarian tumor, ovary .a 1796 to 2236 1 to 433   fully sequenced,   433/433
(100 %)
9 diff
(98.0 %id)
AA419260 ovarian tumor, ovary .a 2206 to 2520 315 to 1   tiling clone, fully sequenced,   315/315
(100 %)
3 diff
(99.1 %id)
AK096434 tongue .b 1 to 2016 2 to 2017 L160P tiling clone, available from FLJ,   2017/2017
(100 %)
2 diff
(100.0 %id)
DA765371 tongue .b 1 to 563 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB122869 thymus .b 1 to 521 2 to 522   capped   521/521
(100 %)
4 diff
(99.3 %id)
BC125154 PCR rescued clones .b 69 to 1293 1 to 1225 A21P L160P     1225/1225
(100 %)
5 diff
(99.6 %id)
BC125155 PCR rescued clones .b 69 to 1293 1 to 1225 A11S A21P L160P     1225/1225
(100 %)
6 diff
(99.6 %id)
BX101527 liver and spleen .b 1433 to 1919 1 to 487   tiling clone,   487/487
(100 %)
1 diff
(99.8 %id)
T83059 liver and spleen .b 1434 to 1695 1 to 270   fully sequenced,   270/270
(100 %)
9 diff
(96.7 %id)
DB325455 tongue .b 1471 to 2016 546 to 1       546/546
(100 %)
1 diff
(99.9 %id)
R01909 liver and spleen .b 1600 to 2017 434 to 4   tiling clone,   431/446
(96 %)
0 diff
(100 %id)
BG993684 head_neck .b 1603 to 1893 1 to 287       287/287
(100 %)
3 diff
(99.0 %id)
BF832803 head_neck .b 1660 to 1992 1 to 332       332/332
(100 %)
14 diff
(95.8 %id)
T90523 liver and spleen .b 1665 to 2012 357 to 1   fully sequenced,   357/357
(100 %)
9 diff
(97.5 %id)
AK026324 human small intestine .c 1 to 1957 1 to 1957 S5P L141P L149P tiling clone, available from FLJ, AAA   1957/1957
(100 %)
8 diff
(99.6 %id)
BP262973 small intestine .c 1 to 580 1 to 580       580/580
(100 %)
8 diff
(98.7 %id)
NM_024861.2   .c 1 to 1958 1 to 1958 exact RefSeq,   1958/1958
(100 %)
0 diff
(100 %id)
AI628384 Kidney .c 885 to 1336 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AI951331 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .c 923 to 1337 415 to 1   tiling clone,   415/415
(100 %)
0 diff
(100 %id)
AA625266 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 959 to 1331 1 to 373       373/373
(100 %)
2 diff
(99.5 %id)
BF197989 skin, normal, 4 pooled samples .c 986 to 1307 322 to 1       322/322
(100 %)
1 diff
(99.7 %id)
AI985375 Kidney .c 1040 to 1344 328 to 23   AAA   306/306
(100 %)
7 diff
(97.8 %id)
AI247256 Kidney .c 1074 to 1341 270 to 2       269/270
(99 %)
0 diff
(100 %id)
DB201422 trachea .d 1 to 581 2 to 529 L110Q E111V R112P T115H E116C ... tiling clone, capped Suspected internal deletion 528/528
(100 %)
0 diff
(100 %id)
BG674830 skin .e-u 1 to 874 1 to 891 C121L L122P V123G Q125A R127Q ... tiling clone,   891/915
(97 %)
64 diff
(93.1 %id)
BG740712 skin .e-u 112 to 800 1 to 694 P15L E16R S17A L18Y S19H ... tiling clone,   694/694
(100 %)
9 diff
(98.8 %id)
DB001862 breast, tumor tissue .f 1 to 534 2 to 535   tiling clone, capped   534/534
(100 %)
2 diff
(99.7 %id)
DA034792 breast .f 18 to 601 2 to 585 exact tiling clone, capped   584/584
(100 %)
3 diff
(99.5 %id)
DA624275 Kidney .g 1 to 548 2 to 549 exact tiling clone, capped   548/548
(100 %)
3 diff
(99.5 %id)
AK055735 Kidney Gene C2orf54, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
DB320383 Kidney Gene C2orf54, variant not shown              
DA621202 Kidney Gene C2orf54, variant not shown       capped      
DA622401 Kidney Gene C2orf54, variant not shown       capped      
DA628838 Kidney Gene C2orf54, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C