To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene HECTD3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
417 supporting clones for gene HECTD3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC323834 brain .a 1 to 491 1 to 491   tiling clone,   491/491
(100 %)
1 diff
(99.8 %id)
DC306744 cerebellum .a 302 to 800 1 to 499       499/499
(100 %)
1 diff
(99.8 %id)
DA108433 cerebellum .a 310 to 861 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DC333387 hippocampus .a 316 to 651 1 to 336       336/336
(100 %)
0 diff
(100 %id)
DC415462 trachea .a 317 to 645 1 to 332       332/332
(100 %)
7 diff
(97.9 %id)
DA508891 brain .a 318 to 891 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DC400303 testis .a 318 to 790 1 to 483       483/491
(98 %)
10 diff
(98.0 %id)
DR003352 fetal brain .a 319 to 899 9 to 590       582/590
(98 %)
6 diff
(99.0 %id)
DC409584 thymus .a 319 to 647 1 to 329       329/329
(100 %)
1 diff
(99.7 %id)
DA111552 cerebellum .a 320 to 906 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA212073 brain .a 320 to 854 2 to 539   capped   538/538
(100 %)
5 diff
(99.1 %id)
DA332198 hippocampus .a 320 to 890 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
NM_024602.5   .a 320 to 3947 1 to 3628 exact RefSeq,   3628/3628
(100 %)
0 diff
(100 %id)
DC374388 brain .a 320 to 824 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
DC382726 placenta .a 320 to 828 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
DB224091 trachea .a 320 to 883 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
CN369745 embryonic stem cells, cell lines H1, H7, andH9 .a 325 to 617 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
DC306868 cerebellum .a 329 to 824 1 to 496       496/496
(100 %)
0 diff
(100 %id)
DA122859 cerebellum .a 329 to 851 2 to 526   capped   525/525
(100 %)
4 diff
(99.3 %id)
DC369733   .a 330 to 765 1 to 438       438/438
(100 %)
4 diff
(99.1 %id)
DC375882 brain .a 330 to 790 1 to 463       463/471
(98 %)
10 diff
(97.9 %id)
DA125329 cerebellum .a 331 to 920 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA125371 cerebellum .a 331 to 915 2 to 588   capped   587/587
(100 %)
3 diff
(99.5 %id)
DA778869 brain .a 331 to 899 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA111348 cerebellum .a 337 to 908 2 to 577   capped   576/576
(100 %)
7 diff
(98.8 %id)
DC374270 brain .a 343 to 807 1 to 466       466/466
(100 %)
1 diff
(99.8 %id)
CN369744 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 344 to 506 1 to 163       163/163
(100 %)
1 diff
(99.4 %id)
DA302709 hippocampus .a 346 to 863 2 to 520   capped   519/519
(100 %)
6 diff
(98.9 %id)
BM147139 leukopheresis .a 346 to 815 1 to 470       470/470
(100 %)
0 diff
(100 %id)
DC365806   .a 347 to 824 1 to 480       480/480
(100 %)
2 diff
(99.6 %id)
DC320900 brain .a 348 to 685 1 to 338       338/338
(100 %)
0 diff
(100 %id)
DA807303 brain .a 348 to 899 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA242841 brain .a 349 to 881 2 to 542   capped   541/541
(100 %)
10 diff
(98.2 %id)
DA319123 hippocampus .a 350 to 899 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA411737 thalamus .a 350 to 915 2 to 567   capped   566/566
(100 %)
4 diff
(99.3 %id)
DB084538 testis .a 350 to 909 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DC369725   .a 351 to 677 1 to 328       328/328
(100 %)
1 diff
(99.7 %id)
DC388291 small intestine .a 351 to 824 1 to 475       475/475
(100 %)
2 diff
(99.6 %id)
DC295895 synovial membrane tissue from rheumatioidarthritis .a 351 to 776 1 to 426       426/426
(100 %)
1 diff
(99.8 %id)
DA100746 cerebellum .a 352 to 919 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA240483 brain .a 352 to 929 2 to 584   capped   583/583
(100 %)
7 diff
(98.8 %id)
DA314416 hippocampus .a 352 to 899 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DA476910   .a 352 to 908 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA629403 Kidney .a 352 to 899 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA767885 brain .a 352 to 810 2 to 461   capped   460/460
(100 %)
7 diff
(98.5 %id)
DA788633 brain .a 352 to 922 2 to 578   capped   577/577
(100 %)
9 diff
(98.5 %id)
DA811287 brain .a 352 to 899 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA989833 synovial membrane tissue from rheumatioidarthritis .a 352 to 876 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB123912 thymus .a 352 to 921 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA339091 hippocampus .a 358 to 946 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA128073 cerebellum .a 359 to 927 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA453517 tongue, tumor tissue .a 359 to 926 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA784268 brain .a 359 to 933 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA807104 brain .a 359 to 925 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB290923 uterus .a 359 to 936 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BQ055701 lymph, lymphoma, cell line .a 364 to 1039 1 to 684       684/1217
(56 %)
20 diff
(98.4 %id)
BQ059330 lymph, lymphoma, cell line .a 364 to 1181 1 to 822   tiling clone,   822/1066
(77 %)
12 diff
(98.9 %id)
BQ061254 lymph, lymphoma, cell line .a 364 to 1040 1 to 679       679/1087
(62 %)
7 diff
(99.4 %id)
DC330060 hippocampus .a 366 to 636 1 to 271       271/271
(100 %)
0 diff
(100 %id)
DC342484 thalamus .a 366 to 819 1 to 455       455/455
(100 %)
1 diff
(99.8 %id)
DC377161 brain .a 366 to 837 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
DC411696 kidney, tumor tissue .a 366 to 824 1 to 459       459/459
(100 %)
0 diff
(100 %id)
DA054134 cerebellum .a 367 to 881 2 to 518   capped   517/517
(100 %)
3 diff
(99.5 %id)
DA293831 hippocampus .a 367 to 892 2 to 529   capped   528/528
(100 %)
4 diff
(99.3 %id)
DA799392 brain .a 367 to 899 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA804183 brain .a 367 to 848 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
DA854759 placenta .a 367 to 949 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB075923 testis .a 367 to 869 2 to 504   capped   503/503
(100 %)
1 diff
(99.9 %id)
DC310321 cerebellum .a 370 to 645 1 to 279       279/279
(100 %)
4 diff
(98.6 %id)
DC343480 thalamus .a 370 to 824 1 to 456       456/456
(100 %)
3 diff
(99.4 %id)
DC383692 Prostate .a 370 to 790 1 to 421       421/421
(100 %)
0 diff
(100 %id)
DC402433 testis .a 370 to 818 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
DC413166 liver, tumor tissue .a 370 to 806 1 to 437       437/437
(100 %)
1 diff
(99.8 %id)
DA230042 brain .a 371 to 906 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA231307 brain .a 371 to 922 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA243612 brain .a 371 to 940 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA337004 hippocampus .a 371 to 946 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DC342207 thalamus .a 371 to 828 1 to 458       458/458
(100 %)
2 diff
(99.6 %id)
DA407249 thalamus .a 371 to 930 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA478654   .a 371 to 857 2 to 494   capped   493/493
(100 %)
7 diff
(98.6 %id)
DA504250 brain .a 371 to 848 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
DA778459 brain .a 371 to 944 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA793924 brain .a 371 to 898 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA919476 small intestine .a 371 to 935 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA999186 breast, tumor tissue .a 371 to 922 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DB155401 thymus .a 371 to 932 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DB158013 thymus .a 371 to 942 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB162029 thymus .a 371 to 957 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DB219129 trachea .a 371 to 906 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB230297 trachea .a 371 to 963 2 to 597   capped   596/596
(100 %)
3 diff
(99.5 %id)
DB237845 trachea .a 371 to 959 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DB239280 trachea .a 371 to 951 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DB239620 trachea .a 371 to 951 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA326761 hippocampus .a 374 to 946 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA498647 brain .a 374 to 857 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
CN369746 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 375 to 764 1 to 390       390/390
(100 %)
2 diff
(99.5 %id)
DC300396   .a 377 to 787 1 to 411       411/414
(99 %)
2 diff
(99.6 %id)
DC401350 testis .a 381 to 645 1 to 266       266/266
(100 %)
1 diff
(99.7 %id)
DA783763 brain .a 382 to 959 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB062903 testis .a 382 to 863 2 to 483   capped   482/482
(100 %)
2 diff
(99.6 %id)
DA443841 tongue, tumor tissue .a 392 to 946 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DC393015 breast, tumor tissue .a 393 to 727 1 to 335       335/335
(100 %)
2 diff
(99.5 %id)
DA164492 amygdala .a 394 to 873 2 to 484   capped   483/483
(100 %)
5 diff
(99.0 %id)
DB155912 thymus .a 396 to 1002 2 to 611   capped   610/610
(100 %)
3 diff
(99.6 %id)
CN369747 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 401 to 766 1 to 366       366/366
(100 %)
4 diff
(99.0 %id)
BQ060130 lymph, lymphoma, cell line .a 402 to 1046 1 to 646       646/1095
(58 %)
23 diff
(97.9 %id)
DR002085 fetal brain .a 409 to 1107 1 to 699       699/699
(100 %)
6 diff
(99.2 %id)
DA771512 brain .a 411 to 980 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA725586   .a 445 to 936 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
AW294056   .a 517 to 796 1 to 280     Submitted on the opposite strand 280/280
(100 %)
2 diff
(99.3 %id)
DA866316 Prostate .a 544 to 1001 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
AA418673 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 547 to 650 1 to 103     Submitted on the opposite strand 103/103
(100 %)
1 diff
(99.1 %id)
AI824211 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 547 to 683 1 to 137     Submitted on the opposite strand 137/139
(98 %)
1 diff
(99.3 %id)
AW170440 cervix, tumor .a 547 to 986 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
AA418810 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 665 to 1139 474 to 1     Submitted on the opposite strand 474/474
(100 %)
13 diff
(97.3 %id)
CO247532 Chondrosarcoma Lung Metastasis cell lines, lung .a 731 to 1404 29 to 697       669/781
(85 %)
17 diff
(97.9 %id)
BQ215795 melanotic melanoma, skin .a 804 to 1648 1 to 852       852/856
(99 %)
9 diff
(99.0 %id)
BQ337520 marrow .a 825 to 984 161 to 3       159/161
(98 %)
2 diff
(98.8 %id)
DN997791 breast cancer, Mammary gland (cancer tissue) .a 848 to 1406 9 to 567       559/567
(98 %)
6 diff
(99.0 %id)
AV704744 adrenal gland .a 880 to 1611 28 to 759       732/759
(96 %)
16 diff
(97.9 %id)
AK056545   .a 969 to 3946 1 to 2978   tiling clone, available from FLJ,   2978/2978
(100 %)
7 diff
(99.8 %id)
DA744157   .a 970 to 1477 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
TI_1520873567   .a 1042 to 1364 131 to 453     Submitted on the opposite strand 322/453
(71 %)
7 diff
(98.5 %id)
TI_1520874761   .a 1042 to 2137 64 to 1155     Submitted on the opposite strand 1091/1264
(86 %)
15 diff
(98.9 %id)
TI_1607547125   .a 1042 to 2143 67 to 1170     Submitted on the opposite strand 1103/1265
(87 %)
37 diff
(97.1 %id)
BC126352 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 1043 to 3565 1 to 2523       2523/2523
(100 %)
3 diff
(99.9 %id)
BC130470 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 1043 to 3565 1 to 2523       2523/2523
(100 %)
4 diff
(99.9 %id)
CF125815 Chondrosarcoma Lung Metastasis cell lines, lung .a 1050 to 1731 1 to 682       682/682
(100 %)
2 diff
(99.8 %id)
TI_154186950   .a 1050 to 1856 59 to 861       803/994
(80 %)
21 diff
(97.9 %id)
TI_1520872667   .a 1061 to 1238 18 to 197     Submitted on the opposite strand 180/197
(91 %)
7 diff
(96.5 %id)
BF311716 brain, neuroblastoma .a 1123 to 1848 1 to 711       711/858
(82 %)
12 diff
(98.7 %id)
BE779249 eye, retinoblastoma .a 1131 to 1831 1 to 693       693/728
(95 %)
19 diff
(97.4 %id)
BE313962 brain, neuroblastoma .a 1136 to 1737 1 to 605       605/809
(74 %)
5 diff
(99.4 %id)
BI855687 breast, mammary adenocarcinoma, cell line .a 1137 to 1765 40 to 670       629/670
(93 %)
10 diff
(98.6 %id)
TI_57186326   .a 1137 to 1765 92 to 722       629/670
(93 %)
10 diff
(98.6 %id)
BF353723 head_neck .a 1140 to 1407 290 to 23       268/290
(92 %)
1 diff
(99.7 %id)
DA770898 brain .a 1253 to 1779 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
AA325519 brain, cerebellum .a 1306 to 1677 1 to 376       373/376
(99 %)
9 diff
(97.7 %id)
AW962179   .a 1307 to 1747 1 to 441       441/447
(98 %)
0 diff
(100 %id)
BE782517 eye, retinoblastoma .a 1347 to 2039 1 to 686       686/752
(91 %)
14 diff
(98.2 %id)
BG818207 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1368 to 2193 1 to 837       710/843
(84 %)
26 diff
(97.0 %id)
CB594916 Blood, promyelocytic leukemia .a 1370 to 2118 1 to 745       745/866
(86 %)
11 diff
(98.8 %id)
BM835610 stomach .a 1392 to 2018 9 to 635       627/627
(100 %)
0 diff
(100 %id)
BU177112 melanotic melanoma, skin .a 1425 to 2236 10 to 827       818/829
(98 %)
13 diff
(98.5 %id)
DA571746 whole embryo, mainly head .a 1427 to 2264 2 to 840   capped   839/871
(96 %)
9 diff
(99.0 %id)
CN418172 embryonic stem cells, cell lines H1, H7, andH9 .a 1452 to 2058 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
TI_1520872641   .a 1514 to 2711 1223 to 22       1202/1233
(97 %)
22 diff
(98.3 %id)
AW068671 Bone, Hip .a 1541 to 2011 7 to 479       473/479
(98 %)
2 diff
(99.6 %id)
TI_1607547633   .a 1545 to 2044 1 to 495       495/608
(81 %)
19 diff
(96.9 %id)
TI_59389397   .a 1551 to 2356 95 to 899       805/822
(97 %)
17 diff
(98.0 %id)
TI_1520876819   .a 1552 to 2099 11 to 557       547/557
(98 %)
7 diff
(98.8 %id)
BM018729 astrocytoma grade IV, cell line, brain .a 1553 to 2356 1 to 803       803/820
(97 %)
17 diff
(98.0 %id)
BM810427 astrocytoma grade IV, cell line, brain .a 1555 to 2472 1 to 925       925/1082
(85 %)
11 diff
(99.0 %id)
CB118030 brain .a 1556 to 1774 1 to 219       219/219
(100 %)
0 diff
(100 %id)
BM561000 eye, retinoblastoma .a 1565 to 2496 42 to 977       936/1052
(88 %)
32 diff
(97.0 %id)
DA293748 hippocampus .a 1570 to 2148 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA776988 brain .a 1599 to 2172 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA499716 brain .a 1626 to 2179 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA024317   .a 1647 to 2209 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BF528509 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1672 to 2264 1 to 592       592/593
(99 %)
2 diff
(99.7 %id)
BM547946 brain, hippocampus .a 1700 to 2668 20 to 998       979/1075
(91 %)
28 diff
(97.4 %id)
BG403901 bladder, transitional cell papilloma, cell line .a 1740 to 2515 1 to 768       768/866
(88 %)
24 diff
(97.3 %id)
BG403806 bladder, transitional cell papilloma, cell line .a 1741 to 2457 1 to 715       715/716
(99 %)
6 diff
(99.2 %id)
BG104431 melanotic melanoma, skin .a 1752 to 2372 1 to 619       619/619
(100 %)
3 diff
(99.6 %id)
TI_1520876813   .a 1820 to 2895 17 to 1087       1071/1228
(87 %)
30 diff
(97.6 %id)
AW753737 colon .a 1836 to 2293 11 to 465       455/473
(96 %)
9 diff
(98.1 %id)
AW753732 colon .a 1842 to 2264 445 to 21       425/459
(92 %)
8 diff
(98.3 %id)
AW753735 colon .a 1842 to 2264 514 to 86       429/528
(81 %)
13 diff
(97.6 %id)
DA496377 brain .a 1843 to 2431 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
AW753728 colon .a 1845 to 2293 1 to 447       447/456
(98 %)
19 diff
(95.9 %id)
DA916393 small intestine .a 1861 to 2441 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB038016 testis .a 1862 to 2434 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BQ424437 leiomyosarcoma, uterus .a 1865 to 2671 1 to 820       820/911
(90 %)
22 diff
(97.6 %id)
BE243662 leukopheresis .a 1889 to 2146 1 to 258       258/258
(100 %)
0 diff
(100 %id)
BM806331 melanotic melanoma, skin .a 1893 to 2761 8 to 889       880/1004
(87 %)
27 diff
(97.4 %id)
BG829054 muscle, rhabdomyosarcoma .a 1925 to 2656 1 to 732       732/733
(99 %)
6 diff
(99.2 %id)
BI114034 muscle, rhabdomyosarcoma .a 1925 to 2437 1 to 516       516/528
(97 %)
20 diff
(96.3 %id)
BC012829 Muscle, rhabdomyosarcoma .a 1926 to 3946 1 to 2023   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2023/2023
(100 %)
4 diff
(99.9 %id)
BE272237 adenocarcinoma cell line, ovary .a 1928 to 2552 1 to 627       627/675
(92 %)
6 diff
(99.2 %id)
BU186898 embryonal carcinoma, cell line, testis .a 1940 to 2740 1 to 809       809/833
(97 %)
18 diff
(97.9 %id)
TI_57171724   .a 1944 to 2684 66 to 807       742/807
(91 %)
13 diff
(98.4 %id)
BE298447 muscle, rhabdomyosarcoma .a 1945 to 2555 1 to 611   available from MGC,   611/647
(94 %)
3 diff
(99.6 %id)
BI827906 brain, medulla .a 1945 to 2684 1 to 741       741/741
(100 %)
7 diff
(99.1 %id)
CK430344 eye, lacrimal gland .a 1965 to 2586 1 to 622       622/622
(100 %)
0 diff
(100 %id)
DA009086 adrenal gland .a 2013 to 2556 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BP344958 synovial membrane .a 2013 to 2592 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
BI004442 head_normal .a 2035 to 2465 12 to 440       431/440
(97 %)
6 diff
(98.7 %id)
BE003737 breast_normal .a 2047 to 2409 1 to 363       363/363
(100 %)
2 diff
(99.5 %id)
AA351230 brain .a 2080 to 2450 1 to 369       369/369
(100 %)
5 diff
(98.7 %id)
DN997763 breast cancer, Mammary gland (cancer tissue) .a 2129 to 2755 9 to 635       627/635
(98 %)
0 diff
(100 %id)
CD359285 testis .a 2165 to 2687 167 to 690       524/1257
(41 %)
9 diff
(99.3 %id)
BG997028 head_neck .a 2189 to 2754 25 to 590       566/590
(95 %)
6 diff
(99.0 %id)
DA048059   .a 2213 to 2745 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
TI_1607547637   .a 2232 to 2704 10 to 481       472/481
(98 %)
6 diff
(98.8 %id)
BF977286 melanotic melanoma, high MDR, skin .a 2238 to 2764 1 to 525       525/795
(66 %)
6 diff
(99.3 %id)
BG472570 eye, retinoblastoma .a 2257 to 3076 1 to 812       812/814
(99 %)
21 diff
(97.5 %id)
BE709148 head_neck .a 2263 to 2502 12 to 253       242/262
(92 %)
7 diff
(97.4 %id)
BE731069 choriocarcinoma, placenta .a 2278 to 3064 1 to 774       774/972
(79 %)
27 diff
(97.3 %id)
CA397119 eye, RPE/choroid .a 2285 to 2876 1 to 592       592/592
(100 %)
0 diff
(100 %id)
BM546052 ovary (pool of 3) .a 2311 to 3147 1 to 839       839/1089
(77 %)
17 diff
(98.5 %id)
AK024809   .a 2346 to 3946 147 to 1747   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1601/1747
(91 %)
2 diff
(99.9 %id)
BI115203 muscle, rhabdomyosarcoma .a 2360 to 3069 1 to 706   available from MGC,   706/709
(99 %)
9 diff
(98.8 %id)
BI115022 muscle, rhabdomyosarcoma .a 2360 to 3143 1 to 781       781/783
(99 %)
21 diff
(97.4 %id)
BC019105 Muscle, rhabdomyosarcoma .a 2361 to 3946 1 to 1586   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1586/1586
(100 %)
2 diff
(99.9 %id)
TI_1948084014   .a 2370 to 3002 761 to 130       632/1156
(54 %)
16 diff
(98.7 %id)
TI_1948084012   .a 2371 to 2844 134 to 610       477/1186
(40 %)
22 diff
(98.2 %id)
TI_1948084285   .a 2371 to 3002 762 to 131       632/1170
(54 %)
3 diff
(99.8 %id)
TI_1948084837   .a 2371 to 2846 123 to 600       478/1164
(41 %)
14 diff
(98.8 %id)
BF091919 testis_normal .a 2375 to 2774 1 to 400       400/400
(100 %)
12 diff
(97.0 %id)
TI_1948084839   .a 2375 to 3002 760 to 128       633/1052
(60 %)
17 diff
(98.4 %id)
BE295781 muscle, rhabdomyosarcoma .a 2379 to 2939 1 to 569       569/569
(100 %)
11 diff
(98.1 %id)
TI_1520875413   .a 2391 to 3565 1229 to 59     Submitted on the opposite strand 1171/1308
(89 %)
24 diff
(98.2 %id)
BM928235 brain .a 2412 to 3369 1 to 976       976/1044
(93 %)
74 diff
(93.0 %id)
BG760950 melanotic melanoma, high MDR (cell line), skin .a 2418 to 3421 1 to 987       987/1141
(86 %)
69 diff
(94.0 %id)
BM172371 melanotic melanoma, high MDR (cell line), skin .a 2418 to 2689 1 to 272       272/315
(86 %)
25 diff
(92.1 %id)
BG766951 melanotic melanoma, high MDR (cell line), skin .a 2418 to 3155 1 to 739       739/739
(100 %)
6 diff
(99.2 %id)
BG250550 adenocarcinoma, cell line, Liver .a 2419 to 3147 1 to 720       720/983
(73 %)
22 diff
(97.8 %id)
R87365 brain .a 2422 to 2805 1 to 385       385/387
(99 %)
4 diff
(99.0 %id)
R87843 brain .a 2422 to 2891 1 to 475       473/477
(99 %)
16 diff
(96.7 %id)
CX755780 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2442 to 3194 1 to 742     Submitted on the opposite strand 742/751
(98 %)
13 diff
(98.3 %id)
BF881754 lung_tumor .a 2443 to 2786 1 to 345       345/345
(100 %)
4 diff
(98.9 %id)
TI_1948084562   .a 2443 to 3002 687 to 127       561/1262
(44 %)
21 diff
(98.4 %id)
BP324221 Pancreas .a 2446 to 3027 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
TI_1607545027   .a 2454 to 3082 10 to 638       638/638
(100 %)
4 diff
(99.4 %id)
BE546079 cervical carcinoma cell line, cervix .a 2486 to 3177 1 to 685       685/687
(99 %)
10 diff
(98.6 %id)
BI192798 epithelioid carcinoma cell line, Pancreas .a 2501 to 3316 1 to 818       818/821
(99 %)
14 diff
(98.3 %id)
BU844822 ovary, teratocarcinoma, cell line .a 2509 to 3382 1 to 882       882/882
(100 %)
10 diff
(98.9 %id)
BG770603 melanotic melanoma, high MDR (cell line), skin .a 2527 to 3313 1 to 788       788/791
(99 %)
5 diff
(99.4 %id)
BG680070 skin, squamous cell carcinoma .a 2534 to 3372 1 to 839       839/1212
(69 %)
13 diff
(99.0 %id)
AA133719 colon, tumor .a 2535 to 2921 1 to 397       397/404
(98 %)
18 diff
(95.6 %id)
CA454735   .a 2545 to 3440 1 to 903       903/905
(99 %)
15 diff
(98.4 %id)
BQ710721 Spleen .a 2554 to 3449 1 to 910       912/968
(94 %)
30 diff
(97.0 %id)
BQ707460 Spleen .a 2554 to 3274 1 to 732       732/987
(74 %)
32 diff
(96.8 %id)
BM007501 Spleen .a 2585 to 3325 1 to 749       749/749
(100 %)
16 diff
(97.9 %id)
TI_59382660   .a 2586 to 3325 69 to 816       748/748
(100 %)
15 diff
(98.0 %id)
BQ707483 Spleen .a 2587 to 3399 1 to 816       816/891
(91 %)
19 diff
(97.9 %id)
BM825340 Ascites, stomach .a 2596 to 3144 1 to 549       549/549
(100 %)
3 diff
(99.5 %id)
CN259865 embryonic stem cells, DMSO-treated H9 cellline .a 2650 to 3197 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
BE170248 head_neck .a 2663 to 3184 532 to 10     Submitted on the opposite strand 523/532
(98 %)
0 diff
(100 %id)
BF351563 head_neck .a 2673 to 3182 522 to 8       515/522
(98 %)
0 diff
(100 %id)
CF144865 CNCAP(3)T-225 cell line, Prostate .a 2679 to 3136 7 to 464       458/464
(98 %)
1 diff
(99.8 %id)
TI_154176933   .a 2679 to 3211 80 to 612       533/535
(99 %)
2 diff
(99.7 %id)
H58008 liver and spleen .a 2840 to 3224 1 to 386       386/387
(99 %)
13 diff
(96.7 %id)
CU453235 epidermis .a 2848 to 3592 14 to 758       744/758
(98 %)
10 diff
(98.7 %id)
CN259863 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2862 to 3352 1 to 491       491/491
(100 %)
0 diff
(100 %id)
BE875518 large cell carcinoma, undifferentiated, lung .a 2918 to 3648 1 to 716       716/921
(77 %)
12 diff
(98.7 %id)
BE150273 head_neck .a 2921 to 3065 1 to 145       145/147
(98 %)
7 diff
(95.3 %id)
CB128297 Liver .a 2927 to 3442 1 to 515       515/515
(100 %)
2 diff
(99.7 %id)
CA390256 eye, RPE/choroid .a 2957 to 3239 1 to 283       283/283
(100 %)
4 diff
(98.6 %id)
BM468587 leiomyosarcoma, uterus .a 2958 to 3859 1 to 910       910/1032
(88 %)
31 diff
(97.0 %id)
BQ315434 epid_tumor .a 2962 to 3441 11 to 488       478/488
(97 %)
6 diff
(98.8 %id)
BY997163   .a 2963 to 3603 10 to 650       641/650
(98 %)
6 diff
(99.1 %id)
BF769328 epid_tumor .a 2969 to 3452 1 to 485       485/485
(100 %)
4 diff
(99.2 %id)
TI_227713084   .a 2970 to 3946 1051 to 89   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 963/1024
(94 %)
43 diff
(95.9 %id)
BF857877 prostate_tumor .a 2993 to 3421 1 to 432       432/432
(100 %)
18 diff
(95.9 %id)
CU452367 epidermis .a 3003 to 3609 617 to 11     Submitted on the opposite strand 607/617
(98 %)
0 diff
(100 %id)
TI_1607547639   .a 3004 to 3436 8 to 439       432/440
(98 %)
7 diff
(98.5 %id)
EC485139 Prostate .a 3011 to 3116 106 to 1       106/106
(100 %)
0 diff
(100 %id)
CU452277 epidermis .a 3019 to 3609 601 to 11     Submitted on the opposite strand 591/601
(98 %)
0 diff
(100 %id)
BF879350 lung_tumor .a 3021 to 3199 198 to 16     Submitted on the opposite strand 183/198
(92 %)
0 diff
(100 %id)
BF038913 adenocarcinoma, ovary .a 3031 to 3695 1 to 656       656/925
(70 %)
20 diff
(97.9 %id)
CU444583 epidermis .a 3063 to 3609 557 to 11     Submitted on the opposite strand 547/557
(98 %)
0 diff
(100 %id)
CU443906 epidermis .a 3066 to 3705 649 to 10     Submitted on the opposite strand 640/649
(98 %)
0 diff
(100 %id)
BM553829 duodenal adenocarcinoma, cell line, small intestine .a 3077 to 3947 876 to 1     Submitted on the opposite strand 876/1044
(83 %)
27 diff
(97.5 %id)
H42548 breast .a 3082 to 3491 1 to 417       417/417
(100 %)
9 diff
(97.9 %id)
BX113443 breast .a 3083 to 3828 1 to 746       746/746
(100 %)
1 diff
(99.9 %id)
R50048 breast .a 3083 to 3480 1 to 402       402/402
(100 %)
10 diff
(97.6 %id)
R48718 breast .a 3083 to 3449 1 to 372       372/413
(90 %)
9 diff
(97.9 %id)
H44248 breast .a 3083 to 3457 1 to 381       381/396
(96 %)
10 diff
(97.5 %id)
BI087881 cervix .a 3099 to 3738 1 to 640       640/640
(100 %)
3 diff
(99.6 %id)
BQ962582 epithelioid carcinoma cell line, Pancreas .a 3117 to 3935 822 to 1     Submitted on the opposite strand 822/929
(88 %)
5 diff
(99.5 %id)
BE828651 lung_tumor .a 3121 to 3527 1 to 407       407/407
(100 %)
5 diff
(98.8 %id)
BE828656 lung_tumor .a 3121 to 3405 1 to 285       285/302
(94 %)
3 diff
(99.1 %id)
BX953435   .a 3122 to 3547 1 to 426       426/426
(100 %)
4 diff
(99.1 %id)
BE770011 prostate_tumor .a 3124 to 3377 373 to 120       254/376
(67 %)
0 diff
(100 %id)
BE828640 lung_tumor .a 3124 to 3522 25 to 424       400/424
(94 %)
6 diff
(98.6 %id)
BE828687 lung_tumor .a 3124 to 3496 18 to 391       374/391
(95 %)
6 diff
(98.5 %id)
BF857880 prostate_tumor .a 3137 to 3613 479 to 3     Submitted on the opposite strand 477/479
(99 %)
0 diff
(100 %id)
BI045701 prostate_normal .a 3138 to 3703 589 to 25       565/601
(94 %)
0 diff
(100 %id)
TI_159722542   .a 3141 to 3946 885 to 86   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 800/993
(80 %)
21 diff
(97.9 %id)
BF857875 prostate_tumor .a 3188 to 3643 499 to 43     Submitted on the opposite strand 457/499
(91 %)
0 diff
(100 %id)
BF359035 lung_tumor .a 3199 to 3565 82 to 448       367/448
(81 %)
6 diff
(98.7 %id)
BE828684 lung_tumor .a 3229 to 3595 372 to 7       366/372
(98 %)
0 diff
(100 %id)
BE828619 lung_tumor .a 3239 to 3612 406 to 33       374/413
(90 %)
0 diff
(100 %id)
H03079 placenta .a 3242 to 3537 1 to 296   fully sequenced,   296/296
(100 %)
1 diff
(99.7 %id)
BE770009 prostate_tumor .a 3246 to 3654 409 to 3       407/409
(99 %)
0 diff
(100 %id)
BQ000487 Fibrosarcoma .a 3257 to 3946 710 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 692/692
(100 %)
4 diff
(99.5 %id)
BQ575404 Chondrosarcoma Grade II, Left Pelvis .a 3257 to 3946 709 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 691/691
(100 %)
3 diff
(99.6 %id)
BQ575685 Chondrosarcoma Grade II, Left Pelvis .a 3257 to 3946 709 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 691/691
(100 %)
2 diff
(99.8 %id)
CA309226 Alveolar Macrophage, lung .a 3257 to 3946 711 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 693/693
(100 %)
4 diff
(99.5 %id)
CB528818 Aveolar Macrophage, lung .a 3257 to 3946 709 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 691/691
(100 %)
5 diff
(99.3 %id)
CB241620 Human Lung Epithelial cells, lung .a 3261 to 3946 705 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 687/697
(98 %)
3 diff
(99.6 %id)
EL953160 eyeball .a 3267 to 3879 1 to 613       613/613
(100 %)
10 diff
(98.4 %id)
AV700735 hepatocellular carcinoma .a 3279 to 3945 666 to 1       666/666
(100 %)
7 diff
(99.0 %id)
BE828653 lung_tumor .a 3293 to 3612 328 to 9       320/328
(97 %)
0 diff
(100 %id)
FN136270 breast carcinoma .a 3300 to 3400 106 to 1     Submitted on the opposite strand 106/117
(90 %)
5 diff
(95.8 %id)
BQ575403 Chondrosarcoma Grade II, Left Pelvis .a 3307 to 3946 658 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 640/640
(100 %)
1 diff
(99.9 %id)
CA314393 Human Lung Epithelial cells, lung .a 3310 to 3953 663 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 645/645
(100 %)
3 diff
(99.6 %id)
CA422195 Bone, Enchondroma cell line .a 3312 to 3946 651 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 633/633
(100 %)
7 diff
(98.9 %id)
AA135073 colon, tumor .a 3316 to 3721 1 to 407       407/407
(100 %)
3 diff
(99.3 %id)
AA001245 liver and spleen .a 3317 to 3615 1 to 299       299/304
(98 %)
2 diff
(99.4 %id)
CD367428 Alveolar Macrophage, lung .a 3319 to 3946 645 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 627/627
(100 %)
4 diff
(99.4 %id)
BE828691 lung_tumor .a 3323 to 3612 319 to 30       290/319
(90 %)
0 diff
(100 %id)
TI_157601525   .a 3325 to 3951 654 to 34   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 621/902
(68 %)
13 diff
(98.6 %id)
BF857873 prostate_tumor .a 3333 to 3647 354 to 42     Submitted on the opposite strand 313/354
(88 %)
0 diff
(100 %id)
BQ331817 lung_tumor .a 3341 to 3695 35 to 389       355/389
(91 %)
6 diff
(98.5 %id)
AW603870 colon_normal .a 3342 to 3678 343 to 1       343/343
(100 %)
19 diff
(94.5 %id)
BE828683 lung_tumor .a 3354 to 3639 287 to 2       286/287
(99 %)
0 diff
(100 %id)
CA436376 Bone, Subchondral Bone .a 3354 to 3946 609 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 591/592
(99 %)
5 diff
(99.2 %id)
R76433 placenta .a 3360 to 3622 1 to 265       265/265
(100 %)
4 diff
(98.5 %id)
CA423072 cell lines, Chondrosarcoma .a 3366 to 3950 604 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 586/589
(99 %)
5 diff
(99.2 %id)
CA423819 cell lines, Chondrosarcoma .a 3370 to 3954 602 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 584/584
(100 %)
2 diff
(99.7 %id)
CA944512 Human Lung Epithelial cells, lung .a 3380 to 3946 589 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 571/571
(100 %)
5 diff
(99.2 %id)
W68513 heart .a 3383 to 3683 1 to 306   fully sequenced,   306/306
(100 %)
3 diff
(99.1 %id)
ES313163 beard hair, skin .a 3396 to 3546 1 to 152       152/152
(100 %)
2 diff
(98.7 %id)
BU526910 epidermoid carcinoma, cell line, lung .a 3397 to 3947 1 to 552       552/897
(61 %)
8 diff
(99.2 %id)
CR618738 fetal brain .a 3400 to 3943 1 to 544   tiling clone,   544/544
(100 %)
0 diff
(100 %id)
BX459803 brain, fetal brain .a 3400 to 3947 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
BX463781 brain, fetal brain .a 3400 to 3947 1 to 548       548/548
(100 %)
4 diff
(99.3 %id)
BF793117 adrenal cortex carcinoma, cell line, adrenal gland .a 3402 to 3946 1 to 545   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 545/545
(100 %)
1 diff
(99.9 %id)
DB324902   .a 3406 to 3946 541 to 1       541/541
(100 %)
4 diff
(99.3 %id)
AW166254 cervix .a 3412 to 3947 533 to 2       532/541
(98 %)
0 diff
(100 %id)
CK823669 insulinoma, Pancreas .a 3419 to 3946 543 to 16   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 528/528
(100 %)
3 diff
(99.5 %id)
BE073617 breast .a 3420 to 3601 1 to 182       182/202
(90 %)
3 diff
(98.6 %id)
BP394964 pancreatic islet .a 3429 to 3947 1 to 520     Submitted on the opposite strand 520/524
(99 %)
4 diff
(99.3 %id)
BM850664 stomach .a 3441 to 3945 1 to 505       505/505
(100 %)
2 diff
(99.7 %id)
AA858038 Kidney .a 3444 to 3945 501 to 1       501/501
(100 %)
3 diff
(99.5 %id)
CN259864 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3445 to 3946 1 to 502   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 502/502
(100 %)
2 diff
(99.7 %id)
BQ581459 insulinoma, Pancreas .a 3447 to 3946 518 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 500/500
(100 %)
2 diff
(99.6 %id)
BP395270 pancreatic islet .a 3452 to 3947 1 to 497     Submitted on the opposite strand 497/500
(99 %)
4 diff
(99.2 %id)
BQ423802 melanotic melanoma, skin .a 3462 to 3946 17 to 501   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 485/501
(96 %)
7 diff
(98.7 %id)
BM508103 insulinoma, Pancreas .a 3488 to 3946 475 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 459/459
(100 %)
3 diff
(99.4 %id)
BQ319025 colon .a 3490 to 3893 428 to 25       404/444
(90 %)
0 diff
(100 %id)
AI089805 brain, glioblastoma (pooled) .a 3498 to 3950 454 to 2       453/454
(99 %)
0 diff
(100 %id)
R17019 liver and spleen .a 3502 to 3767 1 to 272       272/272
(100 %)
9 diff
(96.7 %id)
BM999693 lung, Lung Focal Fibrosis .a 3503 to 3949 465 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 447/447
(100 %)
6 diff
(98.7 %id)
AA609667   .a 3509 to 3947 442 to 4       439/442
(99 %)
0 diff
(100 %id)
AI077339 B-cell, chronic lymphotic leukemia .a 3510 to 3947 444 to 7       438/444
(98 %)
0 diff
(100 %id)
AI301225 placenta .a 3510 to 3947 455 to 6       450/455
(98 %)
0 diff
(100 %id)
AI199745 anaplastic oligodendroglioma, brain .a 3516 to 3946 430 to 1       430/430
(100 %)
5 diff
(98.9 %id)
H03080 placenta .a 3517 to 3947 432 to 1   fully sequenced,   432/432
(100 %)
8 diff
(98.2 %id)
AA133632 colon, tumor .a 3524 to 3946 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
R87765 brain .a 3525 to 3927 412 to 1       412/421
(97 %)
12 diff
(97.2 %id)
AA610024   .a 3526 to 3947 425 to 4       422/425
(99 %)
0 diff
(100 %id)
AA633362 breast .a 3541 to 3932 392 to 1       392/392
(100 %)
0 diff
(100 %id)
AA825681 germinal center B cell .a 3541 to 3946 442 to 38   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 405/405
(100 %)
2 diff
(99.6 %id)
AI222648 Kidney .a 3542 to 3947 407 to 6       402/407
(98 %)
0 diff
(100 %id)
AW512126 lymph node, lymphoma, follicular mixed small and largecell .a 3544 to 3947 407 to 3       405/407
(99 %)
0 diff
(100 %id)
AA872570 germinal center B cell .a 3548 to 3946 418 to 20   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 399/399
(100 %)
1 diff
(99.8 %id)
AI201686 anaplastic oligodendroglioma, brain .a 3550 to 3946 397 to 1       397/397
(100 %)
0 diff
(100 %id)
AA609687   .a 3553 to 3947 398 to 4       395/398
(99 %)
0 diff
(100 %id)
H42549 breast .a 3563 to 3930 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AW005515 anaplastic oligodendroglioma, brain .a 3572 to 3946 375 to 1       375/375
(100 %)
0 diff
(100 %id)
C75670   .a 3590 to 3947 365 to 8       358/365
(98 %)
0 diff
(100 %id)
AI039127   .a 3611 to 3947 343 to 8       336/343
(97 %)
0 diff
(100 %id)
AI016159   .a 3618 to 3947 333 to 4       330/333
(99 %)
0 diff
(100 %id)
AW005743 anaplastic oligodendroglioma, brain .a 3622 to 3947 326 to 1       326/326
(100 %)
0 diff
(100 %id)
BF091822 testis_normal .a 3624 to 3994 11 to 381   tiling clone,   371/381
(97 %)
10 diff
(97.4 %id)
R85937 brain .a 3624 to 3941 318 to 1       318/318
(100 %)
1 diff
(99.7 %id)
AA632352 breast .a 3626 to 3945 320 to 1       320/320
(100 %)
2 diff
(99.4 %id)
W68398 heart .a 3653 to 3947 305 to 1   fully sequenced,   305/305
(100 %)
1 diff
(99.7 %id)
BM144280 leukopheresis .a 3659 to 3946 304 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 288/313
(92 %)
5 diff
(98.5 %id)
AI161348 heart .a 3669 to 3948 285 to 6       280/285
(98 %)
0 diff
(100 %id)
BM144300 leukopheresis .a 3670 to 3947 300 to 22       279/306
(91 %)
0 diff
(100 %id)
AL119441 amygdala .a 3674 to 3946 298 to 25   AAA Submitted on the opposite strand 274/276
(99 %)
4 diff
(98.6 %id)
AW082316 pooled .a 3676 to 3947 274 to 3       272/274
(99 %)
0 diff
(100 %id)
C75560   .a 3678 to 3947 274 to 5       270/275
(98 %)
0 diff
(100 %id)
AW841065 colon_normal .a 3686 to 3914 1 to 229       229/229
(100 %)
0 diff
(100 %id)
R53611 breast .a 3689 to 3947 259 to 1       259/259
(100 %)
0 diff
(100 %id)
AA351229 brain .a 3696 to 3946 251 to 1       251/251
(100 %)
0 diff
(100 %id)
H15000 breast .a 3699 to 3939 1 to 240       240/240
(100 %)
1 diff
(99.6 %id)
AA826431 carcinoid, lung .a 3703 to 3946 259 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 243/243
(100 %)
1 diff
(99.6 %id)
FN100987 breast carcinoma .a 3716 to 3835 1 to 121       121/121
(100 %)
1 diff
(99.2 %id)
AW188875 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 3725 to 3946 243 to 22   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 222/222
(100 %)
2 diff
(99.1 %id)
BE042382 colon, moderately-differentiated adenocarcinoma .a 3726 to 3947 223 to 1       223/223
(100 %)
2 diff
(99.2 %id)
AA811218 germinal center B cell .a 3733 to 3946 251 to 38   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 214/214
(100 %)
4 diff
(98.2 %id)
AA505814 breast .a 3771 to 3946 197 to 22   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 176/176
(100 %)
1 diff
(99.5 %id)
EC549930 Prostate .a 3838 to 3938 115 to 15       101/115
(87 %)
0 diff
(100 %id)
BJ995834 hepatoblastoma .b 1 to 496 2 to 436   tiling clone, Suspected internal deletion 436/436
(100 %)
0 diff
(100 %id)
BJ995835 hepatoblastoma .b 2922 to 3378 457 to 1   tiling clone, Suspected internal deletion 457/457
(100 %)
2 diff
(99.6 %id)
AK056873 Prostate .c 1 to 2520 2 to 2521 exact tiling clone, available from FLJ,   2521/2521
(100 %)
4 diff
(99.9 %id)
DA867968 Prostate .c 1 to 540 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DB329731 Prostate .c 1949 to 2520 572 to 1       572/576
(99 %)
2 diff
(99.7 %id)
DA939653 Spleen .d 1 to 599 2 to 600   tiling clone, capped   599/599
(100 %)
1 diff
(99.9 %id)
BF336606 colon .d 316 to 848 536 to 5   tiling clone,   532/536
(99 %)
0 diff
(100 %id)
H51693 liver and spleen .d 754 to 1120 1 to 371   tiling clone,   371/486
(76 %)
9 diff
(98.2 %id)
R83263 liver and spleen .d 1606 to 2015 416 to 1   tiling clone,   416/442
(94 %)
23 diff
(94.8 %id)
AA460822   .e 1 to 424 5 to 419   tiling clone, Submitted on the opposite strand 419/419
(100 %)
13 diff
(96.9 %id)
AA449003   .e 147 to 595 445 to 1   tiling clone, Submitted on the opposite strand 445/445
(100 %)
5 diff
(98.9 %id)
AA461124   .e 170 to 595 415 to 1     Submitted on the opposite strand 415/415
(100 %)
15 diff
(96.4 %id)
CR744737   .e 184 to 594 415 to 1   tiling clone, Submitted on the opposite strand 415/415
(100 %)
7 diff
(98.4 %id)
DA073322 cerebellum .e 408 to 968 2 to 562   tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DA455017 tongue, tumor tissue .e 957 to 1516 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
CN418170 embryonic stem cells, cell lines H1, H7, andH9 .f 1 to 644 1 to 645   tiling clone,   645/645
(100 %)
3 diff
(99.6 %id)
CA488392   .f 573 to 1485 1 to 920   tiling clone,   920/944
(97 %)
14 diff
(98.6 %id)
DA134454 alzheimer cortex .f 618 to 1176 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA189859 amygdala .g 1 to 584 2 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
DB134059 thymus .g 422 to 981 2 to 561   tiling clone, capped   560/560
(100 %)
2 diff
(99.7 %id)
DA253750 caudate nucleus .g 549 to 1130 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
AK091583 brain .g 560 to 2939 1 to 2380 exact tiling clone, available from FLJ,   2380/2380
(100 %)
3 diff
(99.9 %id)
DA514261 brain .g 561 to 1099 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DB104731 thymus .g 669 to 1226 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DB204998 trachea .g 870 to 1444 2 to 576   capped   575/576
(99 %)
3 diff
(99.5 %id)
BQ954836 sciatic nerve .g 911 to 1835 1 to 931       929/958
(96 %)
12 diff
(98.8 %id)
AW192443 adenocarcinoma, Pancreas .g 1080 to 1342 303 to 41   AAA   263/281
(93 %)
0 diff
(100 %id)
BF734234 amnion_normal .g 1279 to 1545 282 to 14     Submitted on the opposite strand 269/282
(95 %)
0 diff
(100 %id)
BE274074 Kidney, renal cell adenocarcinoma .g 1689 to 2343 30 to 684       655/684
(95 %)
6 diff
(99.2 %id)
BU077760 insulinoma, Pancreas .g 1728 to 2271 7 to 550     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 544/550
(98 %)
7 diff
(98.8 %id)
BU075870 insulinoma, Pancreas .g 1728 to 2286 7 to 565     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 559/565
(98 %)
7 diff
(98.8 %id)
BU075688 insulinoma, Pancreas .g 2436 to 2937 520 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 503/503
(100 %)
4 diff
(99.3 %id)
DB316683 brain .g 2527 to 2939 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
BU077549 insulinoma, Pancreas .g 2582 to 2937 372 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 356/356
(100 %)
4 diff
(98.9 %id)
BG700457 brain, hippocampus .h 1 to 731 1 to 731 R9P D10R F11L A12C K13Q ... tiling clone,   731/901
(81 %)
18 diff
(98.1 %id)
DB075111 testis .i 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
CN418171 embryonic stem cells, cell lines H1, H7, andH9 .i 471 to 1154 1 to 685   tiling clone,   685/685
(100 %)
1 diff
(99.9 %id)
AI935756 Kidney .j 1 to 318 1 to 318   tiling clone, Submitted on the opposite strand 318/318
(100 %)
2 diff
(99.4 %id)
BG979814 colon_normal .j 89 to 472 392 to 8   tiling clone,   385/392
(98 %)
1 diff
(99.8 %id)
BM144451 leukopheresis .k 1 to 271 1 to 271   tiling clone,   271/314
(86 %)
2 diff
(99.4 %id)
BE179554 head_neck .k 150 to 742 607 to 15   tiling clone, Submitted on the opposite strand 593/607
(97 %)
0 diff
(100 %id)
DA106804 cerebellum .l-u 1 to 562 2 to 563 exact tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
CN270489 embryonic stem cells, DMSO-treated H9 cellline .l-u 176 to 722 1 to 547 G2A tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 547/547
(100 %)
7 diff
(98.8 %id)
AA323280 brain, cerebellum .m-u 1 to 247 1 to 247 exact tiling clone,   247/247
(100 %)
0 diff
(100 %id)
ES307755 beard hair, skin .n-u 1 to 166 1 to 164 L18* tiling clone,   164/164
(100 %)
3 diff
(98.2 %id)
AA358949 lung Gene HECTD3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK096462 brain Gene HECTD3, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK301124 Spleen Gene HECTD3, variant not shown         Suspected internal deletion, this clone was ignored    
CN278233 embryonic stem cells, DMSO-treated H9 cellline Gene HECTD3, variant not shown         Suspected internal deletion, this clone was ignored    
AI278444 placenta Gene HECTD3, variant not shown         Suspected internal deletion, this clone was ignored    
DC389953 Spleen Gene HECTD3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m-u, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI