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Gene CCDC40TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
117 supporting clones for gene CCDC40 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB240864 trachea .a 1 to 591 2 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
BU160305 melanotic melanoma, skin .a 43 to 654 1 to 614   tiling clone,   614/943
(65 %)
6 diff
(99.4 %id)
BM452907 melanotic melanoma, skin .a 51 to 541 5 to 497       493/1034
(47 %)
10 diff
(99.1 %id)
DB230102 trachea .a 645 to 1241 2 to 598   tiling clone, capped   597/597
(100 %)
1 diff
(99.9 %id)
DB236682 trachea .a 647 to 1061 2 to 416   capped   415/415
(100 %)
1 diff
(99.8 %id)
NM_017950.2   .a 648 to 4944 1 to 4297 exact RefSeq,   4297/4297
(100 %)
4 diff
(100.0 %id)
DB230832 trachea .a 649 to 1247 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DB283897 uterus .a 649 to 1189 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB459031 testis .a 654 to 1137 1 to 484       484/484
(100 %)
3 diff
(99.4 %id)
BG773461 testis .a 655 to 1359 10 to 714       705/714
(98 %)
15 diff
(97.9 %id)
BG772950 testis .a 655 to 1381 10 to 742       733/744
(98 %)
14 diff
(98.2 %id)
AL705485 human skeletal muscle .a 657 to 997 1 to 341       341/341
(100 %)
1 diff
(99.8 %id)
AL704428 human skeletal muscle .a 659 to 1251 1 to 593       593/593
(100 %)
3 diff
(99.5 %id)
DA999463 breast, tumor tissue .a 659 to 1189 2 to 535   capped   534/534
(100 %)
5 diff
(99.1 %id)
BP238269 Liver .a 663 to 1242 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
DA800776 brain .a 664 to 1211 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA286002 corpus callosum .a 665 to 1157 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
DA553478   .a 665 to 1227 2 to 564   capped   563/565
(99 %)
2 diff
(99.7 %id)
DA722434   .a 665 to 1238 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA842356 placenta .a 665 to 1226 2 to 563   tiling clone, capped   562/566
(99 %)
2 diff
(99.7 %id)
DA914893   .a 665 to 1226 2 to 563   capped   562/568
(98 %)
2 diff
(99.7 %id)
DB064849 testis .a 665 to 1201 2 to 538   capped   537/537
(100 %)
3 diff
(99.5 %id)
DB067811 testis .a 665 to 1218 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB097772 testis .a 665 to 1226 2 to 563   capped   562/571
(98 %)
2 diff
(99.7 %id)
DB279819 uterus .a 665 to 1075 2 to 412   capped   411/411
(100 %)
2 diff
(99.6 %id)
TI_1948222199   .a 667 to 1207 118 to 657       540/1306
(41 %)
44 diff
(96.7 %id)
TI_1948222805   .a 667 to 1339 122 to 790       669/1366
(48 %)
41 diff
(97.0 %id)
TI_1948222806   .a 667 to 1527 123 to 987   tiling clone,   865/1294
(66 %)
23 diff
(98.3 %id)
TI_1948223107   .a 667 to 1360 118 to 813       696/1430
(48 %)
26 diff
(98.2 %id)
TI_1948223108   .a 667 to 1522 125 to 982   tiling clone,   858/1331
(64 %)
19 diff
(98.6 %id)
BG610878 adenocarcinoma, Prostate .a 669 to 1323 1 to 654   available from MGC,   654/654
(100 %)
8 diff
(98.8 %id)
DB225500 trachea .a 672 to 1252 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DB052388 testis .a 673 to 1237 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB192525 ovary, tumor tissue .a 674 to 1222 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
EL735815 mixed .a 675 to 1274 1 to 599       599/599
(100 %)
2 diff
(99.7 %id)
TI_1948222200   .a 675 to 1350 136 to 813       678/1362
(49 %)
11 diff
(99.2 %id)
BI762918 pooled colon, kidney, stomach .a 703 to 1409 20 to 727       708/748
(94 %)
19 diff
(97.5 %id)
TI_57150377   .a 703 to 1409 56 to 763       708/784
(90 %)
22 diff
(97.2 %id)
CA407342 adipose .a 1587 to 2223 1 to 634   tiling clone,   634/634
(100 %)
10 diff
(98.5 %id)
CN268171 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1732 to 1870 1 to 139       139/140
(99 %)
1 diff
(99.3 %id)
DB462551 testis .a 1752 to 2235 1 to 484   tiling clone,   484/484
(100 %)
1 diff
(99.8 %id)
DB076254 testis .a 2371 to 2920 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
CD243409 testis .a 3154 to 3905 27 to 783   tiling clone,   754/956
(78 %)
29 diff
(97.0 %id)
AA432391   .a 3573 to 3896 1 to 321   tiling clone,   321/321
(100 %)
6 diff
(98.2 %id)
BX283359 lung, small cell carcinoma .a 3609 to 4115 1 to 507       507/507
(100 %)
4 diff
(99.3 %id)
BE797388 lung, small cell carcinoma .a 3629 to 4524 1 to 886   tiling clone,   886/1225
(72 %)
66 diff
(94.7 %id)
BE794553 lung, small cell carcinoma .a 3630 to 4458 1 to 827       827/1067
(77 %)
50 diff
(95.4 %id)
AA399484   .a 3701 to 3962 1 to 261   tiling clone, Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 261/261
(100 %)
9 diff
(96.6 %id)
BI831172 brain, medulla .a 3820 to 4605 1 to 788       788/788
(100 %)
11 diff
(98.7 %id)
TI_57177037   .a 3820 to 4605 60 to 847       788/847
(93 %)
17 diff
(98.0 %id)
AA398274   .a 4013 to 4300 323 to 36   tiling clone, AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 288/288
(100 %)
0 diff
(100 %id)
TI_57172293   .a 4087 to 4936 60 to 908       849/956
(88 %)
21 diff
(97.9 %id)
BI831460 brain, medulla .a 4089 to 4936 1 to 847   tiling clone,   847/895
(94 %)
20 diff
(97.8 %id)
TI_149298455   .a 4260 to 4931 772 to 108       665/879
(75 %)
0 diff
(100 %id)
DB350598 trachea .a 4391 to 4936 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
AW268430 pooled .a 4473 to 4941 472 to 4       469/472
(99 %)
0 diff
(100 %id)
DB527966 testis .a 4474 to 4935 1 to 462     Submitted on the opposite strand 462/463
(99 %)
3 diff
(99.4 %id)
AI937132 anaplastic oligodendroglioma, brain .a 4486 to 4929 461 to 18   AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 444/444
(100 %)
0 diff
(100 %id)
AW182267 pooled .a 4487 to 4937 453 to 4       450/453
(99 %)
0 diff
(100 %id)
AW300891 colon, moderately differentiated adenocarcinoma .a 4523 to 4939 436 to 20   AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 417/417
(100 %)
0 diff
(100 %id)
AI363725 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4530 to 4937 411 to 3       409/420
(97 %)
0 diff
(100 %id)
AI002121   .a 4537 to 4941 408 to 4       405/408
(99 %)
0 diff
(100 %id)
AI393590 pooled .a 4547 to 4941 398 to 4   tiling clone,   395/398
(99 %)
0 diff
(100 %id)
AA812869   .a 4556 to 4941 391 to 6       386/391
(98 %)
0 diff
(100 %id)
CB850705 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 4561 to 4918 386 to 30   AAA   357/368
(97 %)
0 diff
(100 %id)
AW589487 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4567 to 4940 374 to 1       374/374
(100 %)
0 diff
(100 %id)
AA383228 testis .a 4616 to 4884 1 to 269       269/269
(100 %)
0 diff
(100 %id)
AW958740   .a 4617 to 4939 1 to 323   AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 323/323
(100 %)
0 diff
(100 %id)
AI370331 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4631 to 4941 315 to 5       311/315
(98 %)
0 diff
(100 %id)
AA431750   .a 4642 to 4941 302 to 3       300/302
(99 %)
0 diff
(100 %id)
C20655   .a 4663 to 4939 1 to 278       278/278
(100 %)
1 diff
(99.7 %id)
AI537879 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4706 to 4936 231 to 1       231/231
(100 %)
0 diff
(100 %id)
BC035251 testis .b 1 to 3528 9 to 3476 K362R S553G E816G Q951R H954R ... tiling clone, available from MGC, AAA Suspected internal deletion 3476/3477
(99 %)
16 diff
(99.6 %id)
AB046860   .c 1 to 3795 1 to 3795 P8A tiling clone, available from KIAA,   3795/3795
(100 %)
1 diff
(100.0 %id)
AK000760   .d 1 to 1970 1 to 1970 F117L Q405R A570T tiling clone, available from FLJ,   1970/1970
(100 %)
5 diff
(99.8 %id)
AW591511 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 1585 to 1972 390 to 4   tiling clone,   387/390
(99 %)
0 diff
(100 %id)
AW450364   .d 1612 to 1957 359 to 14       346/369
(93 %)
0 diff
(100 %id)
BC058288 Prostate, adenocarcinoma. .e 1 to 2008 7 to 2014 exact tiling clone, available from MGC, AAA   2010/2011
(99 %)
3 diff
(99.9 %id)
TI_1948223109   .e 683 to 1439 885 to 123       763/1299
(58 %)
17 diff
(98.7 %id)
TI_1948222201   .e 942 to 1439 610 to 111       500/1372
(36 %)
2 diff
(99.9 %id)
BM714469 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1 to 551 1 to 551   tiling clone, Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 551/551
(100 %)
2 diff
(99.7 %id)
BU739446 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1605 to 1906 321 to 20   tiling clone, AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 302/302
(100 %)
0 diff
(100 %id)
AL713758 testis .g 1 to 3927 1 to 3927 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (46/56 A in genome downstream of last aligned base) 3927/3927
(100 %)
0 diff
(100 %id)
DB239204 trachea .g 59 to 649 2 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
DN994149 brain, whole brain .g 195 to 850 1 to 656       656/656
(100 %)
6 diff
(99.1 %id)
CN288939 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 1 to 718 3 to 720   tiling clone,   718/720
(99 %)
7 diff
(99.1 %id)
BP359726 mammary gland .i 1 to 576 7 to 582 exact tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
DB093036 testis .j 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BU157163 melanotic melanoma, cell line, skin .k 1 to 776 1 to 781 W55S     781/884
(88 %)
24 diff
(97.3 %id)
BU189020 melanotic melanoma, cell line, skin .k 1 to 855 1 to 860 W55S     860/908
(94 %)
13 diff
(98.6 %id)
BU172249 melanotic melanoma, cell line, skin .k 1 to 795 1 to 811 W55S     811/871
(93 %)
29 diff
(96.7 %id)
BU183342 melanotic melanoma, cell line, skin .k 1 to 737 1 to 750 W55S     750/967
(77 %)
24 diff
(97.6 %id)
BQ680825 melanotic melanoma, cell line, skin .k 1 to 847 1 to 853 W55S tiling clone,   853/940
(90 %)
27 diff
(97.2 %id)
AI872461 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .k 538 to 961 424 to 1   tiling clone,   424/424
(100 %)
2 diff
(99.6 %id)
H86463 eye, retina .k 612 to 911 300 to 1   tiling clone,   300/300
(100 %)
3 diff
(99.0 %id)
DB063695 testis .l 1 to 537 2 to 538 W55S tiling clone, capped   537/537
(100 %)
1 diff
(99.9 %id)
DB068412 testis .m 1 to 466 2 to 468 S30F E31* tiling clone, capped   467/467
(100 %)
2 diff
(99.6 %id)
DB061539 testis .n 1 to 452 9 to 461 Q124H tiling clone, capped   460/460
(100 %)
4 diff
(99.2 %id)
BF062469 colon, colon tumor, RER+ .o-u 1 to 501 501 to 1   tiling clone,   501/501
(100 %)
0 diff
(100 %id)
DA344523 substantia nigra .o-u 263 to 841 2 to 580 exact tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
BG506583 lung .o-u 381 to 820 1 to 440       440/539
(81 %)
3 diff
(99.5 %id)
BU607343 Human Lung Epithelial cells, lung .p 1 to 579 597 to 19 A4P T9X tiling clone, AAA   579/579
(100 %)
2 diff
(99.7 %id)
AA043928 uterus .q-u 1 to 466 1 to 469 C61X     469/469
(100 %)
10 diff
(97.9 %id)
AA054499 uterus .q-u 1 to 187 1 to 186   tiling clone, fully sequenced,   186/186
(100 %)
2 diff
(99.0 %id)
AV718925 corresponding non cancerous liver tissue .q-u 29 to 612 583 to 1   tiling clone, Submitted on the opposite strand 583/583
(100 %)
3 diff
(99.5 %id)
AI191633   .q-u 138 to 632 495 to 1       495/495
(100 %)
2 diff
(99.6 %id)
AA058342 uterus .q-u 157 to 629 481 to 1   fully sequenced,   481/481
(100 %)
14 diff
(97.1 %id)
BG991573 head_neck .q-u 184 to 323 155 to 16       140/155
(90 %)
0 diff
(100 %id)
AA948009 Kidney, kidney tumor .q-u 264 to 629 366 to 1       366/366
(100 %)
2 diff
(99.5 %id)
AA912165 pooled .q-u 386 to 632 247 to 1   tiling clone,   247/247
(100 %)
2 diff
(99.2 %id)
DA088012 cerebellum .r 1 to 560 2 to 562 I7N Q8P L9T A10G E12R ... tiling clone, capped   561/561
(100 %)
4 diff
(99.3 %id)
AW938527 denis_drash .s 1 to 330 1 to 324 K2* tiling clone,   324/324
(100 %)
18 diff
(94.5 %id)
AK056583 tongue Gene CCDC40, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK130684 synovial membrane (knee) Gene CCDC40, variant not shown       available from FLJ, This clone was ignored    
DA191466 amygdala Gene CCDC40, variant not shown       capped This clone was ignored    
DB524517 testis Gene CCDC40, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AA974967 Kidney Gene CCDC40, variant not shown         Submitted on the opposite strand    
AW089256 brain, tumor, 5 pooled (see description) Gene CCDC40, variant not shown         This clone was ignored    
BQ009577 Chondrosarcoma, Left Pubic Bone Gene CCDC40, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB325297 tongue Gene CCDC40, variant not shown         Suspected internal deletion, this clone was ignored    
DA760874 tongue Gene CCDC40, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB288627 uterus Gene CCDC40, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p, .q-u, .r, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C