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Gene CPSF3LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
424 representative clones for gene CPSF3L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK291387 brain .a 1 to 2519 2 to 2520 N440D tiling clone,   2520/2520
(100 %)
1 diff
(100.0 %id)
DA785184 brain .a 1 to 573 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AK056652 brain .a 41 to 2570 1 to 2530 A445V tiling clone, available from FLJ,   2530/2530
(100 %)
1 diff
(100.0 %id)
DA768605 brain .a 42 to 552 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DB325594 brain .a 2022 to 2570 549 to 1       549/549
(100 %)
0 diff
(100 %id)
DA129217 alzheimer cortex .b 1 to 484 2 to 485   tiling clone, capped   484/484
(100 %)
1 diff
(99.8 %id)
CA405906 adipose .b 88 to 470 1 to 385       385/386
(99 %)
8 diff
(98.0 %id)
BE790521 lung, small cell carcinoma .b 93 to 836 10 to 749       741/856
(86 %)
15 diff
(98.3 %id)
BM552105 leiomyosarcoma, uterus .b 93 to 958 9 to 881       873/1018
(85 %)
29 diff
(97.2 %id)
TI_159676725   .b 93 to 931 56 to 889       837/1056
(79 %)
25 diff
(97.7 %id)
TI_154188053   .b 94 to 765 101 to 771       671/1020
(65 %)
20 diff
(98.1 %id)
BU153124 embryonal carcinoma, cell line, testis .b 169 to 1023 1 to 871       871/875
(99 %)
32 diff
(96.4 %id)
BI198037 brain, neuroblastoma .b 175 to 935 1 to 758       758/758
(100 %)
14 diff
(98.2 %id)
BC000675 Colon, adenocarcinoma .b 447 to 2089 1 to 1643   tiling clone, available from MGC, AAA   1643/1643
(100 %)
2 diff
(99.9 %id)
DC395558 testis .c 1 to 556 2 to 557   tiling clone,   557/557
(100 %)
0 diff
(100 %id)
DC352883 brain .c 1 to 554 1 to 554       554/554
(100 %)
0 diff
(100 %id)
BI550584 brain, hippocampus .c 10 to 708 1 to 700       700/702
(99 %)
8 diff
(98.9 %id)
DC299993   .c 16 to 590 1 to 575       575/575
(100 %)
0 diff
(100 %id)
AL136813 testis .c 21 to 2142 1 to 2122 P95S tiling clone, available from DKFZ, AAA   2122/2122
(100 %)
4 diff
(99.9 %id)
NM_017871.4   .c 21 to 2155 1 to 2135 exact RefSeq, AAA   2135/2135
(100 %)
0 diff
(100 %id)
DA038868   .c 24 to 592 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CR984814 T-Lymphocytes .c 25 to 953 1 to 933       933/936
(99 %)
8 diff
(99.2 %id)
DA385740 thalamus .c 28 to 491 2 to 465   capped   464/464
(100 %)
0 diff
(100 %id)
CX164529 human embryonic stem cells differentiated toan early endodermal cell type .c 28 to 753 1 to 726       726/726
(100 %)
1 diff
(99.9 %id)
DB185528 liver, tumor tissue .c 28 to 595 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA038264   .c 30 to 593 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA045037 bladder .c 30 to 600 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA373592 thalamus .c 30 to 574 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BX421645 T cells (Jurkat cell line) .c 30 to 902 1 to 871       871/871
(100 %)
4 diff
(99.6 %id)
DA536229 heart .c 30 to 606 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA647497   .c 30 to 756 2 to 732   capped   731/791
(92 %)
12 diff
(98.5 %id)
DA663103   .c 30 to 584 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA731417   .c 30 to 808 2 to 782   capped   779/783
(99 %)
5 diff
(99.4 %id)
DA760781 tongue .c 30 to 767 2 to 744   capped   743/743
(100 %)
16 diff
(97.9 %id)
DA773914 brain .c 30 to 603 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA783348 brain .c 30 to 598 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA831592 placenta .c 30 to 719 2 to 691   capped   690/690
(100 %)
3 diff
(99.6 %id)
DB054318 testis .c 30 to 599 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA503556 brain .c 31 to 620 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA516207 brain .c 34 to 587 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA022612   .c 35 to 596 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA575399   .c 35 to 584 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA577442   .c 35 to 601 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
TI_57215062   .c 35 to 869 26 to 861       834/861
(96 %)
9 diff
(99.0 %id)
CN336460 embryonic stem cells, cell lines H1, H7, andH9 .c 36 to 738 1 to 703       703/703
(100 %)
2 diff
(99.8 %id)
BQ427819 melanotic melanoma, skin .c 37 to 921 1 to 888       886/888
(99 %)
24 diff
(97.3 %id)
AU280793   .c 37 to 606 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BC007978 Ovary, adenocarcinoma .c 38 to 2134 1 to 2097 exact available from MGC, AAA   2097/2097
(100 %)
3 diff
(99.9 %id)
BP223454 colon mucosa .c 38 to 770 1 to 742       742/883
(84 %)
18 diff
(98.0 %id)
BG115941 duodenal adenocarcinoma, cell line, small intestine .c 38 to 781 1 to 737       737/876
(84 %)
22 diff
(97.5 %id)
BM462095 eye, retinoblastoma .c 39 to 846 1 to 808       808/1043
(77 %)
9 diff
(99.2 %id)
CV816345 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 39 to 795 1 to 756       756/866
(87 %)
15 diff
(98.3 %id)
TI_57218371   .c 39 to 834 23 to 818       796/818
(97 %)
9 diff
(98.9 %id)
CV812802 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 40 to 846 1 to 808       806/871
(92 %)
9 diff
(99.0 %id)
DA041307 bladder .c 41 to 604 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BX333998 Neuroblastoma Cot 50-normalized .c 41 to 1086 1 to 1038   AAA   1041/1053
(98 %)
36 diff
(96.6 %id)
BX403176 Neuroblastoma Cot 50-normalized .c 41 to 970 1 to 927       927/931
(99 %)
15 diff
(98.4 %id)
BF751688 breast_normal .c 42 to 279 268 to 24     Submitted on the opposite strand 245/268
(91 %)
7 diff
(97.4 %id)
DA375000 thalamus .c 43 to 598 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BI752040 brain .c 43 to 869 1 to 828       826/828
(99 %)
4 diff
(99.6 %id)
DB052505 testis .c 43 to 612 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BX443111 B cells (Ramos cell line) .c 44 to 1036 1 to 986       986/1051
(93 %)
14 diff
(98.7 %id)
BG771941 testis .c 45 to 935 1 to 888       888/898
(98 %)
19 diff
(97.9 %id)
BI754954 brain .c 45 to 834 1 to 790       790/790
(100 %)
3 diff
(99.7 %id)
BM805352 brain, hippocampus .c 45 to 1014 13 to 1001       987/1076
(91 %)
39 diff
(96.4 %id)
BE885025 leiomyosarcoma, uterus .c 49 to 787 1 to 741       741/787
(94 %)
30 diff
(96.2 %id)
BF212901 bone marrow, from chronic myelogenous leukemia .c 49 to 708 1 to 653       653/704
(92 %)
15 diff
(97.9 %id)
CR625226 T cells (Jurkat cell line) .c 51 to 2098 1 to 2048 exact tiling clone,   2048/2048
(100 %)
0 diff
(100 %id)
BX458347 placenta .c 51 to 976 1 to 925       925/925
(100 %)
4 diff
(99.6 %id)
BX422054 T cells (Jurkat cell line) .c 51 to 806 1 to 757       757/757
(100 %)
3 diff
(99.7 %id)
DA573824   .c 51 to 615 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BF340688 brain, glioblastoma with EGFR amplification .c 51 to 781 1 to 727       727/1000
(72 %)
22 diff
(97.8 %id)
CD655537 Embryonic Stem cells .c 52 to 776 12 to 729       718/785
(91 %)
18 diff
(97.8 %id)
DA678283   .c 54 to 821 2 to 769   capped   768/768
(100 %)
13 diff
(98.4 %id)
BP345625 synovial membrane .c 55 to 636 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BE742062 adenocarcinoma cell line, ovary .c 57 to 823 1 to 769       769/1212
(63 %)
17 diff
(98.6 %id)
BX438842 placenta .c 59 to 1038 1 to 971       971/971
(100 %)
11 diff
(98.9 %id)
BX447782 T cells (Jurkat cell line) .c 59 to 1112 1 to 1048       1048/1053
(99 %)
20 diff
(98.2 %id)
BM544222 ovary (pool of 3) .c 60 to 964 23 to 933       911/1073
(84 %)
25 diff
(97.7 %id)
TI_57233369   .c 60 to 574 558 to 45     Submitted on the opposite strand 514/708
(72 %)
7 diff
(99.1 %id)
AW246199 lung, small cell carcinoma .c 61 to 594 9 to 542       534/542
(98 %)
9 diff
(98.4 %id)
CD171941 White Matter .c 61 to 814 1 to 760       760/843
(90 %)
9 diff
(99.0 %id)
CR992020 T-Lymphocytes .c 61 to 756 1 to 696       696/697
(99 %)
2 diff
(99.8 %id)
BG254158 adenocarcinoma, cell line, Prostate .c 62 to 787 1 to 714       714/963
(74 %)
22 diff
(97.8 %id)
BQ054500 lymph, lymphoma, cell line .c 62 to 1037 1 to 985       985/1026
(96 %)
23 diff
(97.8 %id)
BQ055134 lymph, lymphoma, cell line .c 62 to 846 1 to 795       793/1071
(74 %)
17 diff
(98.5 %id)
BQ918843 large cell carcinoma, lung .c 62 to 987 17 to 949       933/950
(98 %)
38 diff
(96.0 %id)
BQ646600 hepatocellular carcinoma, cell line, Liver .c 63 to 762 1 to 700       700/926
(75 %)
21 diff
(97.8 %id)
DA846027 placenta .c 65 to 623 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BU145258 ductal carcinoma, cell line, Pancreas .c 66 to 959 1 to 909       909/909
(100 %)
26 diff
(97.2 %id)
BQ686894 ductal carcinoma, cell line, Pancreas .c 66 to 976 1 to 915       915/915
(100 %)
15 diff
(98.4 %id)
BQ686737 ductal carcinoma, cell line, Pancreas .c 66 to 955 1 to 901       901/904
(99 %)
29 diff
(96.8 %id)
BQ942210 epidermoid carcinoma, cell line, lung .c 66 to 948 1 to 885       885/885
(100 %)
12 diff
(98.7 %id)
BI906895 leukocyte .c 67 to 565 498 to 1     Submitted on the opposite strand 498/498
(100 %)
2 diff
(99.6 %id)
BQ441044 melanotic melanoma, skin .c 67 to 929 1 to 871       871/877
(99 %)
18 diff
(98.0 %id)
DB028073 testis .c 67 to 603 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BM906295 ovary (pool of 3) .c 69 to 777 1 to 711       711/1083
(65 %)
15 diff
(98.7 %id)
BM478139 lymph, lymphoma, cell line .c 70 to 1031 30 to 995       966/1004
(96 %)
30 diff
(97.1 %id)
CN336457 embryonic stem cells, cell lines H1, H7, andH9 .c 72 to 725 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
CR981816 T-Lymphocytes .c 73 to 779 1 to 708       708/723
(97 %)
4 diff
(99.5 %id)
DA795487 brain .c 76 to 639 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CR533557   .c 79 to 1978 1 to 1900 P95S     1900/1900
(100 %)
4 diff
(99.8 %id)
CV027203 mixed .c 79 to 719 1 to 641       641/641
(100 %)
3 diff
(99.6 %id)
TI_1948095056   .c 79 to 991 130 to 1044   fully sequenced,   915/1044
(87 %)
31 diff
(97.1 %id)
TI_1948095374   .c 79 to 1038 129 to 1084       956/1329
(71 %)
35 diff
(97.4 %id)
BE889122 leiomyosarcoma, uterus .c 87 to 763 1 to 672       672/673
(99 %)
8 diff
(98.9 %id)
BG248501 adenocarcinoma cell line, colon .c 89 to 782 1 to 688       688/691
(99 %)
9 diff
(98.7 %id)
BU178097 melanotic melanoma, skin .c 91 to 776 1 to 691       691/877
(78 %)
10 diff
(98.9 %id)
DA046795   .c 97 to 1015 2 to 909   capped   908/911
(99 %)
27 diff
(97.1 %id)
BX446632 neuroblastoma .c 113 to 1115 1 to 994       994/998
(99 %)
15 diff
(98.5 %id)
BM763750 Ascites, stomach .c 160 to 849 1 to 690       690/690
(100 %)
3 diff
(99.6 %id)
BM764626 Ascites, stomach .c 160 to 808 1 to 649       649/652
(99 %)
2 diff
(99.7 %id)
BM764916 Ascites, stomach .c 160 to 825 1 to 666       666/666
(100 %)
2 diff
(99.7 %id)
BM781526 Ascites, stomach .c 160 to 825 1 to 666       666/666
(100 %)
2 diff
(99.7 %id)
DR761310 embryonic stem .c 244 to 1043 1 to 800       800/800
(100 %)
1 diff
(99.9 %id)
BM784175 stomach .c 245 to 895 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
CX782288 human embryonic stem cells .c 269 to 1081 1 to 813       813/813
(100 %)
1 diff
(99.9 %id)
BE899323 adenocarcinoma cell line, ovary .c 302 to 1098 27 to 818       792/818
(96 %)
19 diff
(97.7 %id)
BG763140 melanotic melanoma, high MDR (cell line), skin .c 368 to 1022 1 to 654       654/654
(100 %)
4 diff
(99.4 %id)
CR982418 T-Lymphocytes .c 396 to 1190 1 to 795       795/798
(99 %)
2 diff
(99.8 %id)
BQ641399 eye, normal pigmented retinal epithelium .c 424 to 1184 16 to 789       774/931
(83 %)
28 diff
(97.0 %id)
BU182639 melanotic melanoma, skin .c 436 to 1292 1 to 867       865/908
(95 %)
18 diff
(98.1 %id)
BE871648 adenocarcinoma, colon .c 477 to 1218 1 to 743       741/933
(79 %)
22 diff
(97.7 %id)
BE382334 brain, neuroblastoma .c 478 to 1121 1 to 646       646/700
(92 %)
5 diff
(99.3 %id)
CN336459 embryonic stem cells, cell lines H1, H7, andH9 .c 484 to 1190 8 to 713       706/713
(99 %)
7 diff
(99.1 %id)
BG912329 anaplastic oligodendroglioma with 1p/19qloss, brain .c 552 to 1285 11 to 746       736/746
(98 %)
8 diff
(99.0 %id)
BC013904 Lymph, Burkitt lymphoma .c 591 to 2134 1 to 1544   available from MGC, AAA   1544/1544
(100 %)
0 diff
(100 %id)
BX433272 T cells (Jurkat cell line) .c 602 to 1373 780 to 1       780/864
(90 %)
22 diff
(97.5 %id)
BG762264 melanotic melanoma, high MDR (cell line), skin .c 608 to 1373 1 to 768       768/770
(99 %)
6 diff
(99.3 %id)
BG767353 melanotic melanoma, high MDR (cell line), skin .c 608 to 1334 1 to 732       732/736
(99 %)
9 diff
(98.8 %id)
BE269460 Burkitt lymphoma, lymph .c 609 to 1319 1 to 704       704/705
(99 %)
15 diff
(97.9 %id)
BE296693 muscle, rhabdomyosarcoma .c 610 to 1209 1 to 600       600/602
(99 %)
1 diff
(99.9 %id)
BE397065 Burkitt lymphoma, lymph .c 610 to 1234 1 to 624       624/625
(99 %)
3 diff
(99.6 %id)
BE513665 Burkitt lymphoma, lymph .c 610 to 1329 1 to 712       712/765
(93 %)
17 diff
(97.8 %id)
BE560076 Burkitt lymphoma, lymph .c 610 to 1372 1 to 770       768/797
(96 %)
16 diff
(98.0 %id)
BE560690 Burkitt lymphoma, lymph .c 610 to 1379 1 to 769       769/1098
(70 %)
14 diff
(98.8 %id)
BQ879432 ductal carcinoma, cell line, Pancreas .c 628 to 1467 1 to 845       845/909
(92 %)
21 diff
(97.7 %id)
BG681895 skin, squamous cell carcinoma .c 631 to 1400 1 to 771       771/775
(99 %)
5 diff
(99.4 %id)
BF034450 adenocarcinoma, ovary .c 635 to 1352 1 to 722       722/722
(100 %)
9 diff
(98.8 %id)
BG386872 adenocarcinoma cell line, colon .c 635 to 1437 1 to 802       802/1009
(79 %)
22 diff
(97.9 %id)
CR623939 Neuroblastoma Cot 10-normalized .c 644 to 2070 1 to 1427       1427/1427
(100 %)
0 diff
(100 %id)
BF972849 leiomyosarcoma cell line, uterus .c 654 to 1456 1 to 800       800/891
(89 %)
20 diff
(97.8 %id)
BE249844 adenocarcinoma cell line, colon .c 655 to 1373 1 to 713       713/953
(74 %)
8 diff
(99.2 %id)
BG742172 skin .c 710 to 1473 1 to 766       766/766
(100 %)
3 diff
(99.7 %id)
BM918755 pooled pancreas and spleen .c 773 to 1684 19 to 938       920/1127
(81 %)
14 diff
(98.8 %id)
BF340101 brain, glioblastoma with EGFR amplification .c 775 to 1292 1 to 518       518/518
(100 %)
0 diff
(100 %id)
BQ687587 ductal carcinoma, cell line, Pancreas .c 776 to 1542 1 to 769       769/883
(87 %)
7 diff
(99.3 %id)
BF307279 muscle, rhabdomyosarcoma .c 782 to 1485 1 to 698       698/931
(74 %)
11 diff
(98.9 %id)
BI115170 muscle, rhabdomyosarcoma .c 782 to 1501 1 to 717       717/717
(100 %)
6 diff
(99.2 %id)
BQ939768 epidermoid carcinoma, cell line, lung .c 849 to 1689 1 to 849       849/911
(93 %)
31 diff
(96.6 %id)
TI_57173548   .c 855 to 1719 68 to 937       868/937
(92 %)
19 diff
(98.0 %id)
AK000549   .c 856 to 2142 1 to 1286   available from FLJ, AAA   1286/1286
(100 %)
3 diff
(99.8 %id)
BI826351 brain, medulla .c 858 to 1719 1 to 867       865/867
(99 %)
14 diff
(98.4 %id)
TI_1948095057   .c 961 to 1880 1044 to 128   fully sequenced,   918/1045
(87 %)
21 diff
(98.0 %id)
BQ888468 melanotic melanoma, cell line, skin .c 962 to 1766 1 to 809       809/821
(98 %)
8 diff
(99.1 %id)
BQ061706 lymph, lymphoma, cell line .c 966 to 1816 1 to 858       858/979
(87 %)
14 diff
(98.6 %id)
BQ065226 lymph, lymphoma, cell line .c 967 to 1875 1 to 921       921/1030
(89 %)
24 diff
(97.7 %id)
BQ643306 lymph, lymphoma, cell line .c 967 to 1829 1 to 870       870/916
(94 %)
17 diff
(98.2 %id)
CV028148 mixed .c 973 to 1622 1 to 650       650/650
(100 %)
0 diff
(100 %id)
BG995042 head_neck .c 990 to 1172 181 to 1       181/181
(100 %)
2 diff
(98.9 %id)
BM819988 stomach .c 1017 to 1288 1 to 272       272/272
(100 %)
0 diff
(100 %id)
TI_1948095375   .c 1034 to 1880 973 to 126       848/1276
(66 %)
19 diff
(98.6 %id)
BX443110 B cells (Ramos cell line) .c 1046 to 2112 1060 to 1       1060/1067
(99 %)
21 diff
(98.1 %id)
EC521081 Prostate .c 1054 to 1143 90 to 5       86/90
(95 %)
3 diff
(96.7 %id)
CV355674 head_neck .c 1056 to 1365 315 to 6     Submitted on the opposite strand 310/315
(98 %)
0 diff
(100 %id)
CD671475 eye, Iris .c 1079 to 1716 1 to 638   fully sequenced,   638/638
(100 %)
0 diff
(100 %id)
CR986553 T-Lymphocytes .c 1098 to 1804 1 to 706       706/706
(100 %)
2 diff
(99.8 %id)
BF339399 brain, glioblastoma with EGFR amplification .c 1100 to 1756 1 to 656       656/656
(100 %)
7 diff
(99.0 %id)
BQ224518 embryonal carcinoma, cell line, testis .c 1101 to 1823 1 to 726       726/875
(82 %)
10 diff
(98.9 %id)
BX364455 Neuroblastoma Cot 25-normalized .c 1117 to 2113 988 to 1       989/1058
(93 %)
19 diff
(98.3 %id)
TI_149297735   .c 1209 to 2141 996 to 71   AAA   926/982
(94 %)
26 diff
(97.4 %id)
TI_1948075316   .c 1210 to 1880 796 to 125       672/1471
(45 %)
23 diff
(98.5 %id)
BX447781 T cells (Jurkat cell line) .c 1212 to 2124 909 to 1       909/965
(94 %)
14 diff
(98.6 %id)
TI_1948075608   .c 1213 to 1880 795 to 125       671/1380
(48 %)
12 diff
(99.2 %id)
BG013990 placenta_normal .c 1215 to 1537 1 to 323       323/323
(100 %)
0 diff
(100 %id)
BE747425 adenocarcinoma cell line, ovary .c 1238 to 1958 2 to 724       723/724
(99 %)
11 diff
(98.5 %id)
BM797352 Ascites, stomach .c 1244 to 1615 1 to 372       372/372
(100 %)
0 diff
(100 %id)
BF033321 adenocarcinoma, ovary .c 1258 to 2017 1 to 746       746/919
(81 %)
25 diff
(97.3 %id)
BI022761 marrow .c 1271 to 1702 1 to 432       432/432
(100 %)
0 diff
(100 %id)
BE744795 adenocarcinoma cell line, ovary .c 1271 to 2087 1 to 805       805/817
(98 %)
19 diff
(97.7 %id)
BI057176 placenta_normal .c 1277 to 1627 351 to 1       351/351
(100 %)
0 diff
(100 %id)
BG987509 head_neck .c 1284 to 1618 353 to 19       335/356
(94 %)
2 diff
(99.5 %id)
CX754365 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1287 to 2083 1 to 790     Submitted on the opposite strand 790/817
(96 %)
15 diff
(98.2 %id)
BI028558 marrow .c 1299 to 1627 329 to 1       329/329
(100 %)
4 diff
(98.8 %id)
BX422053 T cells (Jurkat cell line) .c 1304 to 2078 793 to 20       774/793
(97 %)
3 diff
(99.7 %id)
BF902765 marrow .c 1308 to 1627 320 to 1     Submitted on the opposite strand 320/320
(100 %)
0 diff
(100 %id)
AW381699 head_neck .c 1310 to 1717 418 to 11       408/433
(94 %)
0 diff
(100 %id)
T51050 ovary .c 1316 to 1423 106 to 1     Submitted on the opposite strand 106/110
(96 %)
2 diff
(98.2 %id)
BG831107 epithelioid carcinoma cell line, Pancreas .c 1350 to 1994 1 to 645       645/648
(99 %)
2 diff
(99.7 %id)
BQ894676 melanotic melanoma, cell line, skin .c 1360 to 2140 796 to 9     Submitted on the opposite strand 788/956
(82 %)
20 diff
(98.0 %id)
BM855122 Ascites, stomach .c 1364 to 1813 1 to 450       450/450
(100 %)
0 diff
(100 %id)
AA477678 ovarian tumor, ovary .c 1366 to 1757 6 to 396       393/396
(99 %)
7 diff
(98.3 %id)
TI_149295808   .c 1374 to 2142 846 to 93   AAA   754/907
(83 %)
21 diff
(97.7 %id)
AA348306 brain, hippocampus .c 1376 to 1664 1 to 289       289/289
(100 %)
0 diff
(100 %id)
AU149583   .c 1388 to 2142 754 to 1       754/787
(95 %)
14 diff
(98.3 %id)
TI_154126350   .c 1393 to 2142 816 to 73   AAA   744/922
(80 %)
19 diff
(98.0 %id)
BQ044930 Knee, Osteoarthritic Cartilage .c 1395 to 2139 757 to 14   AAA   744/744
(100 %)
2 diff
(99.8 %id)
TI_149290577   .c 1409 to 2141 815 to 90   AAA   726/948
(76 %)
17 diff
(98.3 %id)
BQ001213 lung, Metastatic Chondrosarcoma .c 1416 to 2134 729 to 16   AAA   714/714
(100 %)
4 diff
(99.5 %id)
CB528982 Aveolar Macrophage, lung .c 1420 to 2141 736 to 17   AAA   720/720
(100 %)
7 diff
(99.1 %id)
BG958183 colon .c 1425 to 1684 267 to 4       264/267
(98 %)
1 diff
(99.7 %id)
TI_149277299   .c 1445 to 2134 789 to 100   AAA   690/691
(99 %)
1 diff
(99.9 %id)
BQ019045 lung, Metastatic Chondrosarcoma .c 1446 to 2142 715 to 19   AAA   697/705
(98 %)
1 diff
(99.9 %id)
BU677565 lung .c 1465 to 2134 685 to 16   AAA   670/670
(100 %)
1 diff
(99.9 %id)
W17119 lung .c 1472 to 1822 1 to 350   fully sequenced,   350/350
(100 %)
8 diff
(97.8 %id)
TI_154018948   .c 1476 to 2138 773 to 110       664/788
(84 %)
5 diff
(99.4 %id)
BM982751 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1476 to 2141 682 to 17   AAA   666/671
(99 %)
1 diff
(99.9 %id)
BQ020831 lung, Metastatic Chondrosarcoma .c 1515 to 2134 635 to 16   AAA   620/620
(100 %)
0 diff
(100 %id)
AW249929 lung, small cell carcinoma .c 1601 to 2139 549 to 11   AAA   539/539
(100 %)
3 diff
(99.5 %id)
CD671474 eye, Iris .c 1655 to 2141 503 to 17   fully sequenced, AAA   487/487
(100 %)
1 diff
(99.8 %id)
AU157330 placenta .c 1673 to 2142 470 to 1       470/474
(99 %)
7 diff
(98.6 %id)
CX782219 human embryonic stem cells .c 1688 to 2142 488 to 34   AAA   455/455
(100 %)
8 diff
(98.3 %id)
AI084871 anaplastic oligodendroglioma, brain .c 1757 to 2134 378 to 1       378/378
(100 %)
0 diff
(100 %id)
AI860840 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1768 to 2138 371 to 1       371/371
(100 %)
0 diff
(100 %id)
BG982622 colon_normal .c 1769 to 2117 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
CA443708 lung, Metastatic Chondrosarcoma .c 1780 to 2134 370 to 16   AAA   355/355
(100 %)
0 diff
(100 %id)
AA477561 ovarian tumor, ovary .c 1783 to 2139 356 to 1       356/356
(100 %)
1 diff
(99.8 %id)
N78845 lung .c 1787 to 2139 354 to 1   fully sequenced,   354/354
(100 %)
3 diff
(99.2 %id)
AI968953 brain, four pooled pituitary adenomas .c 1796 to 2134 363 to 25   AAA   339/339
(100 %)
0 diff
(100 %id)
AI474472 Prostate .c 1825 to 2143 319 to 1       319/319
(100 %)
0 diff
(100 %id)
BG154171 embryo .c 1838 to 2056 1 to 219       219/219
(100 %)
0 diff
(100 %id)
AI290413 placenta .c 1913 to 2139 227 to 1       227/227
(100 %)
0 diff
(100 %id)
AI972167 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1927 to 2142 216 to 1       216/216
(100 %)
0 diff
(100 %id)
AI365049 pooled germ cell tumors .c 1950 to 2134 185 to 1       185/185
(100 %)
0 diff
(100 %id)
T36028 testis .c 1969 to 2134 1 to 166       166/166
(100 %)
0 diff
(100 %id)
AA682276 liver and spleen .c 2018 to 2142 137 to 13   AAA   125/125
(100 %)
0 diff
(100 %id)
BE892607 melanotic melanoma, skin .c 2047 to 2129 1 to 83       83/83
(100 %)
0 diff
(100 %id)
AK023356 ovary, tumor tissue .d 1 to 2052 1 to 1984 L226H C227L I228H L229P L230P ... tiling clone, available from FLJ, Suspected internal deletion 1984/1984
(100 %)
2 diff
(99.9 %id)
BG901041 cartilage .e 1 to 496 82 to 577   tiling clone,   497/509
(97 %)
10 diff
(98.1 %id)
DB487106 hypothalamus .e 8 to 447 1 to 438       438/438
(100 %)
9 diff
(98.0 %id)
DC383218 Prostate .e 13 to 542 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
DC303670 cerebellum .e 18 to 505 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
DC393269 breast, tumor tissue .e 18 to 460 1 to 444       444/444
(100 %)
2 diff
(99.6 %id)
AK297350 brain .e 34 to 2008 1 to 1975 exact tiling clone,   1975/1975
(100 %)
1 diff
(100.0 %id)
DC351160 brain .e 34 to 608 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DC422130 uterus .e 34 to 350 1 to 317       317/557
(56 %)
11 diff
(98.1 %id)
DC295791 synovial membrane tissue from rheumatioidarthritis .e 62 to 641 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
AK058018 stomach mucosa .f 1 to 1808 5 to 1812 K136E L394P tiling clone, available from FLJ,   1812/1812
(100 %)
4 diff
(99.8 %id)
AK021939 whole embryo, mainly head .g 1 to 1794 5 to 1798 E152K tiling clone, available from FLJ,   1798/1798
(100 %)
1 diff
(100.0 %id)
DA604384   .g 1 to 500 5 to 504   tiling clone, capped   503/503
(100 %)
1 diff
(99.9 %id)
DB269483 uterus .h 1 to 424 2 to 425   tiling clone, capped   424/424
(100 %)
0 diff
(100 %id)
BM152008 leukopheresis .h 26 to 370 1 to 344       345/422
(81 %)
8 diff
(98.2 %id)
DA274230 corpus callosum .h 30 to 493 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA534106 brain .h 30 to 479 2 to 451   capped   450/450
(100 %)
0 diff
(100 %id)
DB151120 thymus .h 30 to 355 2 to 327   capped   326/326
(100 %)
0 diff
(100 %id)
DB209145 trachea .h 30 to 500 2 to 472   capped   471/471
(100 %)
0 diff
(100 %id)
DB267034 uterus .h 30 to 339 2 to 311   capped   310/310
(100 %)
0 diff
(100 %id)
BC042444 Brain, adult medulla .h 66 to 2509 1 to 2444 exact tiling clone, available from MGC, AAA   2444/2444
(100 %)
0 diff
(100 %id)
DA901366   .h 76 to 605 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB173221 kidney, tumor tissue .h 79 to 640 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BQ355573 head_neck .h 375 to 621 272 to 26       247/272
(90 %)
0 diff
(100 %id)
CR614665 Neuroblastoma Cot 25-normalized .i 1 to 1618 1 to 1618 exact tiling clone,   1618/1618
(100 %)
0 diff
(100 %id)
BX364456 Neuroblastoma Cot 25-normalized .i 1 to 981 1 to 977       977/982
(99 %)
10 diff
(99.0 %id)
BX394184 Neuroblastoma Cot 25-normalized .i 1 to 963 1 to 954       956/972
(98 %)
27 diff
(97.3 %id)
DR004915 placenta .j 1 to 532 16 to 546   tiling clone,   534/546
(97 %)
7 diff
(98.8 %id)
BI763961 pooled colon, kidney, stomach .j 477 to 1144 1 to 670   tiling clone,   670/670
(100 %)
2 diff
(99.8 %id)
TI_57151855   .j 477 to 1144 70 to 739       670/739
(90 %)
7 diff
(99.1 %id)
BQ950953 sciatic nerve .j 911 to 1684 1 to 779   tiling clone,   779/965
(80 %)
11 diff
(98.9 %id)
BG673957 skin .j 1383 to 2314 1 to 934   tiling clone,   934/969
(96 %)
14 diff
(98.6 %id)
AK092190   .k 1 to 1868 1 to 1868 exact tiling clone, available from FLJ,   1868/1868
(100 %)
2 diff
(99.9 %id)
DA694352   .k 2 to 567 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB323225   .k 1333 to 1868 536 to 1       536/536
(100 %)
1 diff
(99.9 %id)
BC047576 Brain, hippocampus .l 1 to 2859 1 to 2858 N18K tiling clone, available from MGC, AAA   2858/2858
(100 %)
31 diff
(99.0 %id)
CN411823 embryonic stem cells, cell lines H1, H7, andH9 .l 678 to 1136 1 to 459   tiling clone,   459/459
(100 %)
6 diff
(98.7 %id)
TI_57240363   .l 1562 to 2367 58 to 871   tiling clone,   821/871
(94 %)
8 diff
(99.1 %id)
BG329306 eye, retinoblastoma .m 1 to 583 6 to 605   tiling clone,   605/691
(87 %)
42 diff
(94.0 %id)
BE254233 eye, retinoblastoma .m 16 to 635 1 to 620   tiling clone,   620/620
(100 %)
1 diff
(99.9 %id)
DA131479 alzheimer cortex .m 100 to 633 107 to 640   capped   534/639
(83 %)
7 diff
(99.0 %id)
CX783339 human embryonic stem cells .m 562 to 1370 7 to 814   tiling clone,   808/814
(99 %)
6 diff
(99.3 %id)
AA664326   .m 746 to 933 1 to 184     Submitted on the opposite strand 184/184
(100 %)
4 diff
(97.9 %id)
CN336458 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .m 877 to 1522 9 to 654   tiling clone,   646/654
(98 %)
7 diff
(99.0 %id)
CX783269 human embryonic stem cells .m 1402 to 1866 491 to 27   tiling clone, AAA   465/465
(100 %)
6 diff
(98.8 %id)
BF981929 duodenal adenocarcinoma, cell line, small intestine .n 1 to 746 1 to 732   tiling clone,   732/826
(88 %)
26 diff
(96.9 %id)
DB130354 thymus .n 8 to 545 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
BP327677 prostata .n 9 to 590 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
CN336464 embryonic stem cells, DMSO-treated H9 cellline .n 10 to 788 1 to 779       779/779
(100 %)
3 diff
(99.7 %id)
DA084279 cerebellum .n 18 to 551 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA559790 heart .n 18 to 548 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
CA488934   .n 33 to 890 1 to 863       863/898
(96 %)
17 diff
(98.2 %id)
AW955198   .n 36 to 658 1 to 626       626/626
(100 %)
10 diff
(98.5 %id)
CR592541 Neuroblastoma Cot 50-normalized .n 39 to 1104 1 to 1066 exact tiling clone,   1066/1066
(100 %)
0 diff
(100 %id)
BX376731 Neuroblastoma Cot 50-normalized .n 39 to 215 1 to 177   fully sequenced,   177/177
(100 %)
1 diff
(99.5 %id)
BM043471 carcinoma, cell line, Prostate .n 69 to 872 1 to 808       808/809
(99 %)
32 diff
(96.1 %id)
BU543004 carcinoma, cell line, Prostate .n 72 to 957 1 to 892       892/896
(99 %)
16 diff
(98.3 %id)
BU543529 carcinoma, cell line, Prostate .n 72 to 900 1 to 839       839/885
(94 %)
18 diff
(98.0 %id)
BQ957645 carcinoma, cell line, Prostate .n 73 to 928 1 to 865       865/935
(92 %)
51 diff
(94.6 %id)
BX376730 Neuroblastoma Cot 50-normalized .n 158 to 1104 946 to 1   fully sequenced,   946/946
(100 %)
20 diff
(97.9 %id)
TI_154110884   .n 522 to 1101 636 to 70   AAA   567/806
(70 %)
17 diff
(97.9 %id)
BM554610 duodenal adenocarcinoma, cell line, small intestine .n 542 to 1167 1 to 626       626/1101
(56 %)
4 diff
(99.7 %id)
BM551294 duodenal adenocarcinoma, cell line, small intestine .n 586 to 1436 1 to 870   tiling clone,   870/1152
(75 %)
26 diff
(97.8 %id)
CA448224 Chondrosarcoma, Left Pubic Bone .n 641 to 1101 478 to 19   AAA   460/460
(100 %)
4 diff
(99.2 %id)
DB556442 hypothalamus .n 662 to 1084 1 to 422     Submitted on the opposite strand 422/424
(99 %)
7 diff
(98.4 %id)
AA282171 germinal center B cell .n 685 to 1102 427 to 10       418/427
(97 %)
0 diff
(100 %id)
AI089263 uterus .n 703 to 1102 402 to 3       400/402
(99 %)
0 diff
(100 %id)
AA732590 germinal center B cell .n 867 to 1102 256 to 21   AAA   236/236
(100 %)
1 diff
(99.6 %id)
CN263072 embryonic stem cells, cell lines H1, H7, andH9 .n 877 to 1207 1 to 331   tiling clone,   331/331
(100 %)
1 diff
(99.7 %id)
BI013928 lung_tumor .n 927 to 1144 1 to 213       213/241
(88 %)
14 diff
(94.2 %id)
BE676626 B-cell, chronic lymphotic leukemia .n 1408 to 1907 500 to 1   tiling clone,   500/500
(100 %)
21 diff
(95.8 %id)
DA322296 hippocampus .n 1500 to 1953 2 to 455   tiling clone, capped   454/454
(100 %)
18 diff
(96.1 %id)
CD722773 eye, lacrimal gland .n 1545 to 1908 1 to 364   tiling clone, AAA   364/364
(100 %)
1 diff
(99.8 %id)
DA076646 cerebellum .o 1 to 583 2 to 584   tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
DA150884 amygdala .o 1 to 519 2 to 522   capped   521/521
(100 %)
3 diff
(99.5 %id)
DA268378 caudate nucleus .o 1 to 474 2 to 476   capped   475/475
(100 %)
1 diff
(99.8 %id)
DA483210 brain .o 1 to 672 2 to 671   capped   670/670
(100 %)
2 diff
(99.8 %id)
BP263255 small intestine .o 1 to 574 1 to 575       575/575
(100 %)
11 diff
(98.1 %id)
DA633620 Kidney .o 1 to 577 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA909279   .o 1 to 548 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB007943 cervix, tumor tissue .o 1 to 554 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA137388 alzheimer cortex .o 2 to 561 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA761723 tongue .o 6 to 485 2 to 481   capped   480/480
(100 %)
0 diff
(100 %id)
DA891991 rectum .o 9 to 567 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA916329 small intestine .o 9 to 571 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA923618 small intestine .o 18 to 591 2 to 578   capped   577/577
(100 %)
7 diff
(98.8 %id)
DA620669   .o 22 to 526 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DA160456 amygdala .o 47 to 606 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA659125   .o 47 to 587 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
CB268824 adipose .o 438 to 1071 1 to 629   tiling clone,   629/630
(99 %)
9 diff
(98.6 %id)
DA680548 ovary .o 497 to 1047 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
CX873480 embryonic stem .o 820 to 1523 1 to 704   tiling clone,   704/704
(100 %)
1 diff
(99.9 %id)
BI913400 brain .o 1112 to 1918 1 to 808   tiling clone,   808/808
(100 %)
1 diff
(99.9 %id)
BM011063 brain, neuroblastoma, cell line .p 1 to 866 1 to 866   tiling clone,   866/871
(99 %)
21 diff
(97.6 %id)
TI_59379956   .p 2 to 866 99 to 963       865/870
(99 %)
20 diff
(97.8 %id)
BQ668371 epidermoid carcinoma, cell line, salivary gland .p 614 to 1372 1 to 761       761/874
(87 %)
16 diff
(98.2 %id)
BQ669610 epidermoid carcinoma, cell line, salivary gland .p 614 to 1384 1 to 772   tiling clone,   772/929
(83 %)
9 diff
(99.1 %id)
BQ674376 epidermoid carcinoma, cell line, salivary gland .p 614 to 1190 1 to 577       577/916
(62 %)
8 diff
(99.2 %id)
BQ948215 eye, normal pigmented retinal epithelium .p 840 to 1716 1 to 885   tiling clone,   885/893
(99 %)
14 diff
(98.5 %id)
BQ889778 dorsal root ganglia .q 1 to 727 4 to 731   tiling clone,   731/872
(83 %)
4 diff
(99.6 %id)
DA289360 hippocampus .q 686 to 1227 2 to 543   tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
CV420408 colon .q 764 to 1190 428 to 2     Submitted on the opposite strand 427/428
(99 %)
0 diff
(100 %id)
BY799464 eye .q 771 to 1314 66 to 609       544/609
(89 %)
6 diff
(99.1 %id)
CV420407 colon .q 785 to 1180 421 to 28     Submitted on the opposite strand 394/421
(93 %)
0 diff
(100 %id)
DB130429 thymus .q 1025 to 1571 2 to 548   tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
DC379170 pericardium .r 1 to 559 9 to 568   tiling clone,   560/568
(98 %)
8 diff
(98.6 %id)
DC384381   .r 2 to 551 1 to 550   tiling clone,   550/550
(100 %)
1 diff
(99.9 %id)
DC424129 mammary gland .r 3 to 756 1 to 756 I213X S217L E218K V221G Y222* tiling clone,   756/806
(93 %)
12 diff
(98.6 %id)
DC304664 cerebellum .r 23 to 605 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DC424117 mammary gland .s 1 to 703 2 to 704 L193F G194R tiling clone,   704/755
(93 %)
4 diff
(99.5 %id)
DC360496   .s 21 to 567 1 to 547       547/547
(100 %)
2 diff
(99.7 %id)
DA045501 bladder .t 1 to 569 5 to 573 exact tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
DC340535 thalamus .u 1 to 553 2 to 554 exact tiling clone,   554/554
(100 %)
0 diff
(100 %id)
BM818827 stomach .va 1 to 538 1 to 538 W137X     538/538
(100 %)
0 diff
(100 %id)
BM818844 stomach .va 1 to 538 1 to 538 exact     538/538
(100 %)
0 diff
(100 %id)
BM819888 stomach .va 1 to 539 1 to 539 exact     539/539
(100 %)
0 diff
(100 %id)
BM820053 stomach .va 1 to 664 1 to 664 R120M     664/664
(100 %)
5 diff
(99.3 %id)
BM820910 stomach .va 1 to 524 1 to 524 Q147X     524/524
(100 %)
0 diff
(100 %id)
BM820917 stomach .va 1 to 525 1 to 523 V8C F9L A10H T11A P12R ...     525/523
(100 %)
3 diff
(99.5 %id)
BM849007 stomach .va 1 to 438 1 to 438       438/438
(100 %)
0 diff
(100 %id)
BM848792 stomach .va 1 to 433 1 to 433       433/433
(100 %)
11 diff
(97.5 %id)
BM848819 stomach .va 1 to 532 1 to 532 R120M     532/532
(100 %)
1 diff
(99.9 %id)
BM849355 stomach .va 1 to 695 1 to 695 exact tiling clone,   695/695
(100 %)
0 diff
(100 %id)
BM820551 stomach .va 6 to 584 1 to 577       577/577
(100 %)
2 diff
(99.7 %id)
BM826424 stomach .va 33 to 551 1 to 521       521/521
(100 %)
4 diff
(99.3 %id)
DA050068   .vb 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DA050282   .vb 6 to 576 2 to 572 F139S tiling clone, capped   571/571
(100 %)
2 diff
(99.7 %id)
CB269834 adipose .vc-u 1 to 536 1 to 535   tiling clone,   535/535
(100 %)
1 diff
(99.9 %id)
BG259543 embryonal carcinoma, cell line, testis .vc-u 31 to 755 1 to 718 W38G D39M Y40Q R41A H42R ...     718/719
(99 %)
30 diff
(95.9 %id)
CN413253 embryonic stem cells, cell lines H1, H7, andH9 .vc-u 326 to 770 1 to 445 exact     445/445
(100 %)
0 diff
(100 %id)
BG534298 lung .vc-u 478 to 772 1 to 295       295/348
(84 %)
5 diff
(98.6 %id)
BQ924120 sciatic nerve .vc-u 514 to 867 1 to 354   tiling clone,   354/954
(37 %)
7 diff
(99.3 %id)
BQ932569 sciatic nerve .vc-u 517 to 848 1 to 332       332/941
(35 %)
3 diff
(99.7 %id)
DR159567 human embryonic stem cells differentiated toan early endodermal cell type .vc-u 654 to 833 5 to 183       179/185
(96 %)
6 diff
(96.8 %id)
BF341348 brain, glioblastoma with EGFR amplification .vd 1 to 642 1 to 641 S15R I16S V18* tiling clone,   641/942
(68 %)
27 diff
(97.2 %id)
DC420474 uterus .ve 1 to 577 3 to 579 exact tiling clone,   579/579
(100 %)
0 diff
(100 %id)
AK027767 placenta .vf 1 to 1572 2 to 1573 exact tiling clone, available from FLJ,   1573/1573
(100 %)
1 diff
(100.0 %id)
DA828781 placenta .vf 1 to 726 2 to 728 exact capped   727/774
(93 %)
7 diff
(99.1 %id)
DA155215 amygdala .vf 12 to 581 2 to 571 exact capped   570/570
(100 %)
0 diff
(100 %id)
DA525125 brain .vf 12 to 557 2 to 547 exact capped   546/546
(100 %)
0 diff
(100 %id)
DA874508 Prostate .vf 12 to 577 2 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
DB121231 thymus .vf 12 to 566 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA924019 small intestine .vf 14 to 576 2 to 565 I20T capped   564/564
(100 %)
2 diff
(99.7 %id)
DA453695 tongue, tumor tissue .vf 15 to 581 2 to 569 L31P D32G C33L G34W M35N ... capped   568/568
(100 %)
2 diff
(99.7 %id)
DA782334 brain .vf 15 to 579 2 to 566 exact capped   565/565
(100 %)
1 diff
(99.9 %id)
DA881617   .vf 15 to 553 2 to 540 exact capped   539/539
(100 %)
0 diff
(100 %id)
DA068293 cerebellum .vf 19 to 587 2 to 570 exact capped   569/569
(100 %)
1 diff
(99.9 %id)
DA142486 alzheimer cortex .vf 19 to 479 2 to 462 R48X capped   461/461
(100 %)
2 diff
(99.6 %id)
DA916598 small intestine .vf 19 to 477 2 to 459 exact capped   458/458
(100 %)
1 diff
(99.8 %id)
DB107607 thymus .vf 19 to 451 2 to 434 exact capped   433/433
(100 %)
1 diff
(99.8 %id)
DB108014 thymus .vf 19 to 581 2 to 565 exact capped   564/564
(100 %)
2 diff
(99.7 %id)
DB132311 thymus .vf 19 to 476 2 to 460 L31X D32G C33L G34W M35N ... capped   459/459
(100 %)
1 diff
(99.8 %id)
DB147415 thymus .vf 20 to 477 2 to 460 exact capped   459/459
(100 %)
4 diff
(99.2 %id)
DB134281 thymus .vf 27 to 540 2 to 515 exact capped   514/514
(100 %)
0 diff
(100 %id)
DB222735 trachea .vf 27 to 575 2 to 550 exact capped   549/549
(100 %)
0 diff
(100 %id)
DB154356 thymus .vf 31 to 610 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
DA521754 brain .vf 33 to 587 2 to 556 exact capped   555/555
(100 %)
1 diff
(99.9 %id)
DA986065 synovial membrane tissue from rheumatioidarthritis .vf 38 to 568 2 to 533 F39L N40Q D41* capped   532/532
(100 %)
1 diff
(99.9 %id)
DA254351 caudate nucleus .vf 39 to 540 2 to 503 exact capped   502/502
(100 %)
0 diff
(100 %id)
AU125439   .vf 61 to 728 2 to 664 exact capped   663/663
(100 %)
4 diff
(99.4 %id)
CA489786   .vf 656 to 1545 1 to 898       898/904
(99 %)
20 diff
(97.8 %id)
CA425864 cell lines, Chondrosarcoma .vf 840 to 1542 721 to 19   tiling clone, AAA   703/703
(100 %)
4 diff
(99.5 %id)
AU149103   .vf 999 to 1556 553 to 1       553/560
(98 %)
22 diff
(96.1 %id)
DB373387 placenta .vf 1087 to 1572 486 to 1       486/526
(92 %)
15 diff
(97.2 %id)
AK022675   .vg 1 to 2428 1 to 2427 exact tiling clone, available from FLJ,   2427/2427
(100 %)
8 diff
(99.7 %id)
BF736624 bladder_tumor .vg 906 to 1278 370 to 1   tiling clone, Submitted on the opposite strand 370/370
(100 %)
4 diff
(99.0 %id)
BF507678   .vg 1400 to 1837 8 to 445   tiling clone, Submitted on the opposite strand 438/445
(98 %)
6 diff
(98.7 %id)
CN336461 embryonic stem cells, DMSO-treated H9 cellline .vh 1 to 769 5 to 773 exact tiling clone,   773/773
(100 %)
1 diff
(99.9 %id)
BG423210 Kidney, renal cell adenocarcinoma .vi 1 to 704 2 to 699   tiling clone,   699/699
(100 %)
11 diff
(98.5 %id)
DA378020 thalamus .vj 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DB164319 thymus .vj 2 to 587 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
CA487468   .vj 33 to 885 1 to 862   tiling clone,   862/881
(97 %)
29 diff
(96.8 %id)
DA486272 brain .vk 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
DA778509 brain .vk 1 to 559 2 to 560 exact capped   559/559
(100 %)
1 diff
(99.9 %id)
DA810161 brain .vk 1 to 308 2 to 309 exact capped   308/308
(100 %)
0 diff
(100 %id)
DA498190 brain .vk 22 to 594 2 to 575 V46X S47E A48R S49F S50L ... tiling clone, capped   574/575
(99 %)
2 diff
(99.7 %id)
DB126290 thymus .vk 22 to 582 2 to 562 exact capped   561/561
(100 %)
2 diff
(99.7 %id)
DA516249 brain .vl 1 to 545 2 to 546 exact tiling clone, capped   545/549
(99 %)
2 diff
(99.7 %id)
AA339386 brain .vm 1 to 297 1 to 296 I39X A45G tiling clone,   296/296
(100 %)
3 diff
(99.0 %id)
D31089   .vm 13 to 233 12 to 231       220/231
(95 %)
8 diff
(96.6 %id)
BF747133 breast .vm 30 to 184 1 to 155   tiling clone,   155/155
(100 %)
6 diff
(96.2 %id)
DB265521 uterus .vn 1 to 591 2 to 593   tiling clone, capped   592/592
(100 %)
4 diff
(99.4 %id)
AK123641 brain .vn 425 to 3503 1 to 3079 exact tiling clone, available from FLJ,   3079/3079
(100 %)
3 diff
(100.0 %id)
DA531000 brain .vn 426 to 1032 2 to 608   capped   607/607
(100 %)
0 diff
(100 %id)
DB135647 thymus .vn 497 to 1052 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB164254 thymus .vn 497 to 1084 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
CD359979 testis .vn 693 to 1492 1 to 811       811/912
(88 %)
17 diff
(98.2 %id)
DA450951 tongue, tumor tissue .vn 771 to 1329 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
BQ709155 Spleen .vn 828 to 1644 10 to 833       824/937
(87 %)
7 diff
(99.3 %id)
DA152307 amygdala .vn 883 to 1463 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
CN272056 embryonic stem cells, DMSO-treated H9 cellline .vn 1150 to 1453 310 to 7     Submitted on the opposite strand 304/310
(98 %)
0 diff
(100 %id)
DA081559 cerebellum .vn 1237 to 1793 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA827396 pericardium .vn 1276 to 1832 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
Z44236 brain, total brain .vn 1284 to 1602 1 to 318       318/318
(100 %)
5 diff
(98.5 %id)
DB267471 uterus .vn 1293 to 1881 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA931497 Spleen .vn 1424 to 1867 2 to 445   capped   444/444
(100 %)
1 diff
(99.8 %id)
BM751561 Ascites, stomach .vn 1465 to 1792 68 to 391       324/391
(82 %)
6 diff
(98.5 %id)
BI918341 brain .vn 1608 to 2248 1 to 639   tiling clone,   639/639
(100 %)
4 diff
(99.4 %id)
TI_57243112   .vn 1611 to 2248 34 to 669       636/669
(95 %)
6 diff
(99.2 %id)
DB317689 brain .vn 2978 to 3503 526 to 1       526/526
(100 %)
1 diff
(99.9 %id)
Z40196 brain, total brain .vn 3255 to 3496 249 to 8       242/249
(97 %)
0 diff
(100 %id)
DN998569 bone marrow .vo 1 to 742 1 to 742   tiling clone,   742/742
(100 %)
7 diff
(99.1 %id)
BU154158 eye, retinoblastoma .vo 633 to 1090 1 to 465   tiling clone,   465/875
(53 %)
9 diff
(99.0 %id)
BM710294 eye, optic nerve .vo 943 to 1369 1 to 427   tiling clone,   427/427
(100 %)
4 diff
(99.1 %id)
BM671724 eye, optic nerve .vo 2356 to 2895 558 to 19   tiling clone, AAA   540/540
(100 %)
1 diff
(99.9 %id)
CB108766 Liver .vp-u 1 to 557 1 to 557   tiling clone,   557/557
(100 %)
3 diff
(99.5 %id)
DA352452 substantia nigra .vp-u 42 to 617 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
AW204016   .vq 1 to 374 15 to 385   tiling clone, Submitted on the opposite strand 371/371
(100 %)
2 diff
(99.5 %id)
BI025998 marrow .vq 88 to 296 198 to 406   tiling clone,   209/218
(95 %)
6 diff
(97.3 %id)
BM997313 lung, Metastatic Chondrosarcoma .vq 91 to 616 543 to 19 exact tiling clone, AAA   525/542
(96 %)
4 diff
(99.3 %id)
CV373086 lung_tumor .vq 138 to 525 407 to 14     Submitted on the opposite strand 394/415
(94 %)
16 diff
(96.2 %id)
CV372839 lung_tumor .vq 185 to 518 349 to 15 exact   Submitted on the opposite strand 335/349
(95 %)
0 diff
(100 %id)
BE792943 lung, small cell carcinoma .vr 1 to 584 1 to 590 S18P W19G C20A H21T L22C ... tiling clone,   590/590
(100 %)
11 diff
(98.2 %id)
DB144230 thymus .vs 1 to 550 2 to 551 exact tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
DB161995 thymus .vs 77 to 547 99 to 569 exact tiling clone, capped   471/568
(82 %)
6 diff
(99.0 %id)
BC008041 Skin, melanotic melanoma. Gene CPSF3L, variant not shown       available from MGC, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
BC020199 Skin, melanotic melanoma. Gene CPSF3L, variant not shown       available from MGC, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
284 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc-u, .vd, .ve, .vf, .vg, .vh, .vi, .vj, .vk, .vl, .vm, .vn, .vo, .vp-u, .vq, .vr, .vs Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI