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Gene C9orf6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
151 supporting clones for gene C9orf6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC015795 Uterus, leiomyosarcoma .a 1 to 2121 1 to 2126 exact tiling clone, available from MGC, AAA   2126/2126
(100 %)
4 diff
(99.9 %id)
BE885605 leiomyosarcoma, uterus .a 24 to 694 1 to 674       674/676
(99 %)
16 diff
(97.7 %id)
CB996751 placenta, pre-eclamptic placenta .a 210 to 912 21 to 729 exact     709/768
(92 %)
13 diff
(98.4 %id)
AU279988   .a 212 to 778 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
NM_017832.3   .a 213 to 2121 1 to 1909 exact RefSeq, AAA   1909/1909
(100 %)
0 diff
(100 %id)
CB960988 Human Placenta, placenta .a 224 to 937 28 to 748 Q165P T177P     721/785
(91 %)
22 diff
(97.2 %id)
AK000464   .a 229 to 2118 1 to 1890 exact available from FLJ, AAA   1890/1890
(100 %)
0 diff
(100 %id)
DA940647 Spleen .a 230 to 813 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BJ990743 hepatoblastoma .a 235 to 825 10 to 600       591/600
(98 %)
6 diff
(99.0 %id)
BI600013 brain, hypothalamus .a 241 to 1063 1 to 826 exact     826/826
(100 %)
9 diff
(99.0 %id)
TI_45215660   .a 241 to 1063 86 to 911 exact     826/911
(90 %)
11 diff
(98.8 %id)
DB468444 hippocampus .a 243 to 676 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
BM921870 pooled brain, lung, testis .a 243 to 1219 11 to 996 R116T     986/1014
(97 %)
29 diff
(97.2 %id)
CF594046 Human Placenta, placenta .a 246 to 1031 29 to 822 exact     794/822
(96 %)
14 diff
(98.3 %id)
BP281134 bone marrow .a 246 to 827 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
CX757685 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 250 to 984 1 to 730 exact   Submitted on the opposite strand 730/733
(99 %)
6 diff
(99.2 %id)
BI561965 testis .a 251 to 907 1 to 658 S155K I156H T157N E158R G159R ...     658/658
(100 %)
5 diff
(99.3 %id)
BM563596 brain, medulla .a 252 to 1343 1 to 1099 K31N C33V E34R D35T H36T ...     1099/1100
(99 %)
41 diff
(96.3 %id)
TI_44349794   .a 255 to 907 127 to 780 S155K I156H T157N E158R G159R ...     654/780
(83 %)
8 diff
(99.0 %id)
AL701973 human skeletal muscle .a 257 to 789 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
DA278396 corpus callosum .a 259 to 802 2 to 546   capped   545/546
(99 %)
2 diff
(99.7 %id)
DB186003 liver, tumor tissue .a 265 to 837 2 to 574   capped   573/574
(99 %)
1 diff
(99.9 %id)
CR601308 placenta .a 269 to 2124 1 to 1856 exact tiling clone,   1856/1856
(100 %)
0 diff
(100 %id)
DB442776 testis .a 269 to 689 1 to 427       397/427
(92 %)
11 diff
(97.5 %id)
BP350410 brain .a 271 to 853 1 to 582 exact     582/582
(100 %)
3 diff
(99.5 %id)
BP350454 brain .a 272 to 854 1 to 582 D105H V111A L119S G141R S153I ...     582/583
(99 %)
13 diff
(97.8 %id)
CX163908 human embryonic stem cells differentiated toan early endodermal cell type .a 274 to 1106 1 to 833 exact     833/833
(100 %)
0 diff
(100 %id)
BX471099   .a 275 to 568 1 to 294       294/302
(97 %)
1 diff
(99.7 %id)
DB478015 hippocampus .a 277 to 775 1 to 499       499/499
(100 %)
1 diff
(99.8 %id)
AF153417   .a 283 to 2121 1 to 1843 exact AAA   1843/1843
(100 %)
4 diff
(99.8 %id)
DA375071 thalamus .a 283 to 843 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AL514092 placenta .a 285 to 1298 15 to 1022 E9D P10R V11W V12C P13L ... fully sequenced,   1008/1022
(98 %)
22 diff
(97.9 %id)
BU850224 ovary, teratocarcinoma, cell line .a 285 to 1182 1 to 902 exact     902/904
(99 %)
13 diff
(98.6 %id)
CD251887 testis .a 287 to 1095 1 to 810 exact     810/813
(99 %)
4 diff
(99.6 %id)
AA316239 colon .a 290 to 668 1 to 378       378/378
(100 %)
1 diff
(99.8 %id)
CR609752 Neuroblastoma Cot 10-normalized .a 295 to 2093 1 to 1799 exact     1799/1799
(100 %)
0 diff
(100 %id)
AL520852 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 295 to 1213 1 to 918 E9X P10R V11W V12C P13L ... fully sequenced,   918/918
(100 %)
1 diff
(99.9 %id)
BI465108 testis .a 296 to 1082 1 to 809 C33V E34R D35T H36T C37V ...     809/875
(92 %)
54 diff
(93.9 %id)
BG772282 testis .a 299 to 1150 1 to 849 exact     849/851
(99 %)
10 diff
(98.9 %id)
DA270944 caudate nucleus .a 300 to 861 2 to 563 exact capped   562/562
(100 %)
0 diff
(100 %id)
TI_1948238225   .a 301 to 840 117 to 656   fully sequenced,   540/561
(96 %)
6 diff
(99.0 %id)
BG959113 colon .a 307 to 764 11 to 470       460/470
(97 %)
14 diff
(97.1 %id)
EL733067 mixed .a 307 to 851 1 to 545       545/634
(85 %)
0 diff
(100 %id)
BX331812 Neuroblastoma Cot 25-normalized .a 308 to 1421 1 to 1096       1096/1096
(100 %)
32 diff
(97.1 %id)
DA682256 ovary .a 314 to 879 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CB043946 colon, juvenile granulosa tumor .a 344 to 992 12 to 660       649/660
(98 %)
6 diff
(99.1 %id)
BX400957   .a 431 to 1335 115 to 1015       901/1015
(88 %)
26 diff
(97.5 %id)
TI_1948238694   .a 438 to 851 1012 to 603     Submitted on the opposite strand 410/1180
(34 %)
28 diff
(97.7 %id)
CD556807 brain, Pituitary .a 443 to 1055 1 to 615       615/1047
(58 %)
14 diff
(98.7 %id)
TI_1948238456   .a 449 to 851 996 to 594     Submitted on the opposite strand 403/1207
(33 %)
12 diff
(99.1 %id)
BG332510 large cell carcinoma, lung .a 452 to 1203 1 to 744       744/858
(86 %)
22 diff
(97.5 %id)
W58683 heart .a 519 to 977 1 to 460       460/460
(100 %)
1 diff
(99.8 %id)
BG289797 bladder, transitional cell papilloma, cell line .a 522 to 1316 1 to 786       786/954
(82 %)
27 diff
(97.2 %id)
BE543316 cervical carcinoma cell line, cervix .a 533 to 1145 1 to 612       612/616
(99 %)
3 diff
(99.6 %id)
BG959550 colon .a 535 to 911 400 to 27       374/400
(93 %)
1 diff
(99.8 %id)
TI_1948238226   .a 537 to 851 443 to 129   fully sequenced,   315/342
(92 %)
0 diff
(100 %id)
BG433542 Kidney .a 573 to 1337 1 to 758       758/759
(99 %)
28 diff
(96.4 %id)
BP260184 heart .a 607 to 997 1 to 391       391/581
(67 %)
10 diff
(98.3 %id)
BM049531 carcinoma, cell line, Prostate .a 633 to 1419 1 to 788       788/788
(100 %)
3 diff
(99.7 %id)
CB140062 Liver .a 654 to 1075 1 to 422       422/422
(100 %)
0 diff
(100 %id)
CV573592 cornea, eye .a 721 to 1325 1 to 605       605/605
(100 %)
0 diff
(100 %id)
W39634 parathyroid gland, parathyroid tumor .a 759 to 1194 1 to 437       437/438
(99 %)
3 diff
(99.4 %id)
N39365 melanocyte .a 855 to 1269 1 to 418       418/419
(99 %)
6 diff
(98.6 %id)
EH332909   .a 860 to 909 1 to 50       50/50
(100 %)
0 diff
(100 %id)
H68026 liver and spleen .a 929 to 1309 1 to 385       385/385
(100 %)
8 diff
(98.0 %id)
CB052283 leiomyosarcoma, soft tissue .a 942 to 1218 10 to 286       277/286
(96 %)
6 diff
(98.0 %id)
CB159018 Liver .a 942 to 1416 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
BE548151 cervical carcinoma cell line, cervix .a 949 to 1665 1 to 711       711/711
(100 %)
22 diff
(97.0 %id)
BP379335 uterus .a 990 to 1551 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
BE830328 lung_tumor .a 1011 to 1265 2 to 253       252/273
(92 %)
6 diff
(97.9 %id)
DB528786 hippocampus .a 1018 to 1481 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
BX370423   .a 1029 to 1762 1 to 730       730/961
(75 %)
32 diff
(96.7 %id)
AL514091 placenta .a 1117 to 2124 1002 to 1   fully sequenced,   1002/1002
(100 %)
23 diff
(97.8 %id)
BX400956   .a 1142 to 2082 928 to 1       928/941
(98 %)
18 diff
(98.1 %id)
BE562984 endometrium, adenocarcinoma cell line, uterus .a 1153 to 1805 1 to 656       656/656
(100 %)
6 diff
(99.1 %id)
AL520851 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 1183 to 2093 914 to 1   fully sequenced,   914/914
(100 %)
25 diff
(97.3 %id)
BG572537 placenta .a 1204 to 1990 1 to 788       788/789
(99 %)
14 diff
(98.3 %id)
R72674 breast .a 1226 to 1709 1 to 493       493/498
(98 %)
14 diff
(97.2 %id)
BX119900 uterus .a 1293 to 1988 1 to 697       697/697
(100 %)
1 diff
(99.9 %id)
AA149092 uterus .a 1293 to 1754 1 to 467   fully sequenced,   467/467
(100 %)
10 diff
(97.9 %id)
TI_149276685   .a 1324 to 2116 875 to 85   AAA   791/887
(89 %)
10 diff
(98.9 %id)
BM931151 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1330 to 1707 1 to 378   fully sequenced,   378/378
(100 %)
0 diff
(100 %id)
BQ010837 placenta .a 1352 to 1595 262 to 19   AAA   244/251
(97 %)
0 diff
(100 %id)
TI_149287806   .a 1372 to 2121 814 to 65   AAA   750/993
(75 %)
6 diff
(99.4 %id)
CA450512 Human Lung Epithelial cells, lung .a 1384 to 2116 749 to 17   AAA   733/733
(100 %)
3 diff
(99.6 %id)
BM970000 lung .a 1394 to 2121 743 to 16   AAA   728/728
(100 %)
4 diff
(99.5 %id)
BQ233436 leiomyosarcoma, uterus .a 1423 to 2118 1 to 695   AAA   695/695
(100 %)
1 diff
(99.9 %id)
BQ574464 Chondrosarcoma Grade II, Left Pelvis .a 1455 to 2116 680 to 19   AAA   662/662
(100 %)
0 diff
(100 %id)
CB854018 lung, Primary Lung Epithelial Cells .a 1503 to 2116 632 to 19   AAA   614/614
(100 %)
1 diff
(99.9 %id)
CB043945 colon, juvenile granulosa tumor .a 1555 to 2118 582 to 19   AAA   564/564
(100 %)
1 diff
(99.9 %id)
AA427989   .a 1560 to 1959 1 to 399   fully sequenced,   399/399
(100 %)
1 diff
(99.8 %id)
BJ990744 hepatoblastoma .a 1567 to 2106 540 to 1       540/540
(100 %)
0 diff
(100 %id)
CB218823 mandible, pooled .a 1595 to 2118 577 to 54   AAA   524/524
(100 %)
10 diff
(98.1 %id)
AA427780 ovarian tumor, ovary .a 1601 to 2118 518 to 1       518/518
(100 %)
0 diff
(100 %id)
AI741236 pooled .a 1602 to 2124 527 to 4       524/527
(99 %)
0 diff
(100 %id)
BP424834 small intestine .a 1620 to 2118 500 to 1       500/500
(100 %)
1 diff
(99.8 %id)
AI684893 pooled .a 1653 to 2120 470 to 2       469/470
(99 %)
0 diff
(100 %id)
AI394428 pooled .a 1657 to 2116 472 to 13   AAA   460/460
(100 %)
3 diff
(99.4 %id)
AI636193 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1658 to 2118 474 to 14   AAA   461/461
(100 %)
1 diff
(99.8 %id)
AA505864 breast .a 1664 to 2120 457 to 1       457/457
(100 %)
0 diff
(100 %id)
DB535711 hippocampus .a 1670 to 2118 1 to 450     Submitted on the opposite strand 450/450
(100 %)
1 diff
(99.8 %id)
BM684603 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1677 to 2118 458 to 17   fully sequenced, AAA   442/442
(100 %)
0 diff
(100 %id)
W15449 parathyroid gland, parathyroid tumor .a 1679 to 2124 449 to 2       448/449
(99 %)
0 diff
(100 %id)
AI363483 anaplastic oligodendroglioma, brain .a 1680 to 2118 439 to 1       439/439
(100 %)
0 diff
(100 %id)
DB538724 hippocampus .a 1684 to 2118 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
DB507675 testis .a 1686 to 2118 1 to 433     Submitted on the opposite strand 433/433
(100 %)
2 diff
(99.6 %id)
AW081776 pooled .a 1686 to 2120 440 to 2       439/440
(99 %)
0 diff
(100 %id)
AA977471 pooled .a 1688 to 2123 436 to 1       436/439
(99 %)
0 diff
(100 %id)
W58684 heart .a 1690 to 2118 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
AI243652 pooled .a 1693 to 2123 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
N23764 melanocyte .a 1702 to 2119 418 to 1       418/418
(100 %)
0 diff
(100 %id)
DB507519 testis .a 1707 to 2118 1 to 412     Submitted on the opposite strand 412/412
(100 %)
0 diff
(100 %id)
AI025781   .a 1709 to 2047 343 to 5       339/344
(98 %)
0 diff
(100 %id)
AA548370 germ cell tumor .a 1710 to 2116 407 to 1       407/407
(100 %)
0 diff
(100 %id)
AA505845 breast .a 1713 to 2117 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AI086660 senescent fibroblast .a 1720 to 2118 412 to 14   AAA   399/399
(100 %)
0 diff
(100 %id)
AW085127 pooled .a 1724 to 2118 404 to 11   AAA   394/394
(100 %)
5 diff
(98.8 %id)
CB052282 leiomyosarcoma, soft tissue .a 1728 to 2118 414 to 24   AAA   391/391
(100 %)
0 diff
(100 %id)
AA829516 germinal center B cell .a 1730 to 2121 404 to 13   AAA   392/392
(100 %)
0 diff
(100 %id)
AA149093 uterus .a 1731 to 2124 398 to 2   fully sequenced,   397/398
(99 %)
0 diff
(100 %id)
AI242612 follicular lymphoma, lymph node .a 1740 to 2121 402 to 21   AAA   382/382
(100 %)
3 diff
(99.3 %id)
AI687956 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 1743 to 2118 403 to 20   AAA   384/384
(100 %)
5 diff
(98.7 %id)
AI911165 pooled .a 1743 to 2118 389 to 14   AAA   376/376
(100 %)
1 diff
(99.8 %id)
AI784557 uterus .a 1756 to 2121 382 to 17   AAA   366/366
(100 %)
1 diff
(99.8 %id)
AI432378 pooled .a 1756 to 2118 373 to 11   AAA   363/363
(100 %)
1 diff
(99.8 %id)
AI242697 colon, moderately-differentiated adenocarcinoma .a 1760 to 2118 359 to 1       359/359
(100 %)
0 diff
(100 %id)
AI863836 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1766 to 2118 364 to 12   AAA   353/353
(100 %)
0 diff
(100 %id)
CA314899 Human Lung Epithelial cells, lung .a 1781 to 2118 354 to 17   AAA   338/346
(97 %)
0 diff
(100 %id)
BF508505   .a 1801 to 2118 333 to 16   AAA   318/318
(100 %)
3 diff
(99.1 %id)
R72606 breast .a 1806 to 2093 290 to 1       290/290
(100 %)
2 diff
(99.4 %id)
AA905233 pooled .a 1840 to 2122 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AI250653 adenocarcinoma, Pancreas .a 1875 to 2120 247 to 3       245/247
(99 %)
0 diff
(100 %id)
AA952945 pooled .a 1926 to 2118 193 to 1       193/193
(100 %)
0 diff
(100 %id)
AA427864   .a 1929 to 2126 198 to 1   fully sequenced,   198/198
(100 %)
2 diff
(99.0 %id)
AA758524   .a 1965 to 2118 154 to 1       154/154
(100 %)
0 diff
(100 %id)
AI217215   .a 1985 to 2115 133 to 3       131/133
(98 %)
0 diff
(100 %id)
EC462071 Prostate .a 2022 to 2120 1 to 96       96/97
(98 %)
4 diff
(95.9 %id)
BM923503 pooled colon, kidney, stomach .b 1 to 1048 12 to 1065 exact tiling clone,   1054/1070
(98 %)
32 diff
(97.1 %id)
TI_57198717   .c 1 to 566 27 to 593   tiling clone,   567/593
(95 %)
19 diff
(96.8 %id)
BC051827 Brain, Lung, Testis, adult, pooled whole .c 6 to 2479 1 to 2475 exact tiling clone, available from MGC, AAA   2475/2475
(100 %)
1 diff
(100.0 %id)
BI822621 pooled brain, lung, testis .c 6 to 566 1 to 562   available from MGC,   562/562
(100 %)
14 diff
(97.6 %id)
DA020727   .c 51 to 614 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
CU452053 epidermis .c 439 to 822 400 to 16     Submitted on the opposite strand 385/401
(96 %)
0 diff
(100 %id)
TI_149283722   .c 2469 to 3151 771 to 88   tiling clone, AAA   684/684
(100 %)
2 diff
(99.8 %id)
BM984149 lung, Primary Lung Epithelial Cells .c 2490 to 3151 681 to 19   tiling clone, AAA   663/663
(100 %)
1 diff
(99.9 %id)
DB463051 hippocampus .d 1 to 442 1 to 442 R2G tiling clone,   442/442
(100 %)
1 diff
(99.8 %id)
AA383204 testis .e 1 to 389 1 to 397 N88E E89* tiling clone,   397/398
(99 %)
12 diff
(97.0 %id)
CX166036 human embryonic stem cells differentiated toan early endodermal cell type .f 1 to 743 1 to 743 exact tiling clone,   743/743
(100 %)
0 diff
(100 %id)
AA015579 heart .g 1 to 503 504 to 3 A2V T3P A8R E9S P10R ... tiling clone,   502/508
(98 %)
6 diff
(98.9 %id)
AI476217 Kidney .g 126 to 503 379 to 1       379/379
(100 %)
2 diff
(99.5 %id)
BF677987 Prostate .h-u 1 to 580 1 to 568 W64C Y65T S66L S67P L68F ... tiling clone,   568/803
(70 %)
20 diff
(97.6 %id)
CU446195 epidermis .h-u 52 to 513 473 to 11   tiling clone, Submitted on the opposite strand 463/474
(97 %)
0 diff
(100 %id)
CA395279 eye, RPE/choroid .h-u 77 to 600 3 to 526   tiling clone,   524/526
(99 %)
6 diff
(98.9 %id)
BF433755 carcinoid, lung .h-u 431 to 910 485 to 6       480/485
(98 %)
0 diff
(100 %id)
AI339940 carcinoid, lung .h-u 497 to 963 467 to 1   tiling clone,   467/467
(100 %)
0 diff
(100 %id)
AI350616   .h-u 531 to 962 431 to 2       430/432
(99 %)
0 diff
(100 %id)
DB442646 testis .i 1 to 460 1 to 460 exact tiling clone,   460/460
(100 %)
4 diff
(99.2 %id)
AK310297 testis .i 12 to 907 1 to 896 exact tiling clone,   896/896
(100 %)
1 diff
(99.9 %id)
DB046115 testis .i 13 to 587 2 to 576 exact capped   575/575
(100 %)
1 diff
(99.9 %id)
DB470545 hippocampus .i 31 to 502 1 to 472 exact tiling clone,   472/472
(100 %)
0 diff
(100 %id)
AV725570 hypothalamus .j-u 1 to 672 9 to 680 G11E tiling clone, AAA   672/680
(98 %)
6 diff
(99.2 %id)
AA838839 parathyroid gland, parathyroid tumor .j-u 216 to 664 460 to 12 exact tiling clone, AAA   449/449
(100 %)
2 diff
(99.6 %id)
BG213342   .k 1 to 291 1 to 291 N8I tiling clone,   291/297
(97 %)
6 diff
(98.0 %id)
DB373083 placenta Gene C9orf6, variant not shown              
DA828541 placenta Gene C9orf6, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j-u, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C