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Gene C9orf167TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
93 supporting clones for gene C9orf167 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM193833 leukopheresis .a 1 to 294 1 to 294       294/299
(98 %)
10 diff
(96.7 %id)
BM193901 leukopheresis .a 1 to 227 1 to 228   tiling clone,   228/231
(98 %)
16 diff
(93.1 %id)
BM146198 leukopheresis .a 61 to 336 276 to 1   tiling clone,   276/276
(100 %)
8 diff
(97.2 %id)
AK000252 colon mucosa .a 76 to 4147 1 to 4071 Q356R tiling clone, available from FLJ, AAA   4071/4071
(100 %)
8 diff
(99.9 %id)
NM_017723.2   .a 80 to 4148 1 to 4069 exact RefSeq,   4069/4069
(100 %)
0 diff
(100 %id)
BM831410 stomach .a 95 to 577 1 to 483       483/483
(100 %)
0 diff
(100 %id)
BM833292 stomach .a 95 to 549 1 to 454       454/454
(100 %)
4 diff
(99.2 %id)
DB226617 trachea .a 107 to 677 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BM822651 stomach .a 132 to 672 1 to 541       541/541
(100 %)
0 diff
(100 %id)
BM850483 stomach .a 507 to 1012 1 to 506       506/506
(100 %)
4 diff
(99.3 %id)
AW075902 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 565 to 992 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AI343420 colon, colon tumor, RER+ .a 585 to 967 383 to 1       383/383
(100 %)
0 diff
(100 %id)
BG771002 adenocarcinoma, Prostate .a 678 to 1360 1 to 684       684/749
(91 %)
22 diff
(97.1 %id)
BI160275 epithelioid carcinoma cell line, Pancreas .a 804 to 1374 32 to 603       572/603
(94 %)
6 diff
(99.1 %id)
BM740559 Ascites, stomach .a 870 to 1020 1 to 151       151/170
(88 %)
1 diff
(99.5 %id)
BM772942 Ascites, stomach .a 870 to 1020 1 to 151       151/170
(88 %)
1 diff
(99.5 %id)
BM744247 Ascites, stomach .a 870 to 1020 1 to 152       152/171
(88 %)
2 diff
(98.9 %id)
AI597732 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1011 to 1412 1 to 402     Submitted on the opposite strand 402/402
(100 %)
1 diff
(99.8 %id)
AI889841 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1011 to 1411 1 to 401     Submitted on the opposite strand 401/401
(100 %)
1 diff
(99.8 %id)
AW300836 colon, moderately differentiated adenocarcinoma .a 1011 to 1478 1 to 468     Submitted on the opposite strand 468/468
(100 %)
1 diff
(99.8 %id)
AA278322 germinal center B cell .a 1012 to 1342 1 to 328     Submitted on the opposite strand 328/328
(100 %)
10 diff
(97.0 %id)
AI698784 pooled .a 1012 to 1277 1 to 266     Submitted on the opposite strand 266/266
(100 %)
2 diff
(99.3 %id)
BF002149 colon, colon tumor, RER+ .a 1012 to 1564 1 to 553   tiling clone, Submitted on the opposite strand 553/553
(100 %)
0 diff
(100 %id)
TI_153987819   .a 1012 to 1640 59 to 686     Submitted on the opposite strand 628/689
(91 %)
14 diff
(98.0 %id)
AW204151   .a 1013 to 1523 1 to 511     Submitted on the opposite strand 511/511
(100 %)
3 diff
(99.5 %id)
AW083821 colon, moderately differentiated adenocarcinoma .a 1018 to 1465 1 to 448     Submitted on the opposite strand 448/452
(99 %)
3 diff
(99.4 %id)
N90031 parathyroid gland, parathyroid tumor .a 1040 to 1478 1 to 444     Submitted on the opposite strand 444/445
(99 %)
32 diff
(92.9 %id)
AI215491 pooled .a 1040 to 1395 1 to 356     Submitted on the opposite strand 356/356
(100 %)
0 diff
(100 %id)
AI540176 B-cell, chronic lymphotic leukemia .a 1040 to 1479 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
AI805162 pooled .a 1040 to 1478 1 to 439     Submitted on the opposite strand 439/439
(100 %)
0 diff
(100 %id)
AW592236 pooled .a 1063 to 1440 1 to 378     Submitted on the opposite strand 378/378
(100 %)
0 diff
(100 %id)
AA767929 germinal center B cell .a 1076 to 1383 1 to 306     Submitted on the opposite strand 306/306
(100 %)
11 diff
(96.5 %id)
AA836421 germinal center B cell .a 1099 to 1375 1 to 266       266/266
(100 %)
11 diff
(95.9 %id)
DB002821 breast, tumor tissue .a 1138 to 1565 8 to 436   capped   429/435
(98 %)
11 diff
(97.5 %id)
CO246767 Chondrosarcoma Lung Metastasis cell lines, lung .a 1358 to 1847 8 to 499       492/770
(63 %)
7 diff
(99.1 %id)
TI_154195257   .a 1482 to 2352 51 to 911       861/1036
(83 %)
19 diff
(98.2 %id)
W19685 parathyroid gland, parathyroid tumor .a 1508 to 1937 434 to 1     Submitted on the opposite strand 434/435
(99 %)
9 diff
(98.0 %id)
AA278993 germinal center B cell .a 1615 to 1960 360 to 14     Submitted on the opposite strand 347/360
(96 %)
0 diff
(100 %id)
CR998074 T-Lymphocytes .a 1677 to 2103 1 to 427       427/428
(99 %)
1 diff
(99.8 %id)
BG326959 Kidney, renal cell adenocarcinoma .a 1777 to 2058 1 to 282       282/321
(87 %)
12 diff
(96.3 %id)
BQ224727 large cell carcinoma, lung .a 2255 to 2949 1 to 706       706/871
(81 %)
18 diff
(98.0 %id)
BE869392 adenocarcinoma, colon .a 2334 to 3008 6 to 673       668/673
(99 %)
6 diff
(99.2 %id)
TI_154197559   .a 2529 to 3079 33 to 591       559/1058
(52 %)
23 diff
(97.9 %id)
TI_154197016   .a 2531 to 3222 48 to 743       696/1129
(61 %)
37 diff
(96.8 %id)
TI_154197998   .a 2534 to 3160 73 to 707       635/1086
(58 %)
36 diff
(96.7 %id)
TI_154196598   .a 2541 to 3103 1 to 560       560/1037
(54 %)
20 diff
(98.1 %id)
TI_154196632   .a 2541 to 3142 1 to 604       604/1079
(55 %)
25 diff
(97.7 %id)
TI_154195446   .a 2561 to 3055 60 to 556       497/1089
(45 %)
36 diff
(96.7 %id)
BM888108 eye .a 2733 to 2899 1 to 167       167/167
(100 %)
2 diff
(98.9 %id)
BM016750 astrocytoma grade IV, cell line, brain .a 2789 to 3409 1 to 628       628/739
(84 %)
24 diff
(96.8 %id)
BG328504 adenocarcinoma cell line, colon .a 2790 to 3613 1 to 814   tiling clone,   814/918
(88 %)
32 diff
(96.6 %id)
BQ422750 large cell carcinoma, lung .a 2790 to 3210 1 to 421       421/1069
(39 %)
9 diff
(99.2 %id)
TI_59386985   .a 2790 to 3409 98 to 724       627/738
(84 %)
24 diff
(96.8 %id)
BE242461 leukopheresis .a 2896 to 3103 221 to 14       208/221
(94 %)
0 diff
(100 %id)
BG034769 adenocarcinoma, cell line, Liver .a 2898 to 3657 1 to 747       747/942
(79 %)
22 diff
(97.7 %id)
BE617174 adenocarcinoma, colon .a 2921 to 3623 1 to 703       703/704
(99 %)
27 diff
(96.2 %id)
BM850746 stomach .a 3171 to 3632 1 to 462   tiling clone,   462/464
(99 %)
3 diff
(99.4 %id)
R71976 breast .a 3341 to 3730 1 to 396       396/406
(97 %)
13 diff
(96.8 %id)
AA375108 lung .a 3386 to 3630 1 to 245       245/245
(100 %)
0 diff
(100 %id)
AI540887 Tissue culture .a 3436 to 3778 14 to 357       344/367
(93 %)
6 diff
(98.4 %id)
AI540888 Tissue culture .a 3436 to 3778 14 to 358       345/368
(93 %)
7 diff
(98.1 %id)
AI392771 B-cell, chronic lymphotic leukemia .a 3478 to 3824 370 to 24   AAA   347/347
(100 %)
1 diff
(99.8 %id)
AK023361 ovary, tumor tissue .b-u 1 to 2345 2 to 2346 exact tiling clone, available from FLJ,   2346/2346
(100 %)
3 diff
(99.9 %id)
AU134132 ovary, tumor tissue .b-u 1 to 258 2 to 259   capped   258/260
(99 %)
3 diff
(98.9 %id)
BE617662 adenocarcinoma, colon .b-u 1490 to 2304 848 to 28       821/1042
(78 %)
0 diff
(100 %id)
TI_149313900   .b-u 1533 to 2345 882 to 85   AAA   798/962
(82 %)
15 diff
(98.5 %id)
TI_154135148   .b-u 1561 to 2345 859 to 80   AAA   780/949
(82 %)
20 diff
(97.9 %id)
AW963785   .b-u 1585 to 2203 1 to 630       630/631
(99 %)
30 diff
(95.3 %id)
CB305651 lung, Primary Lung Cystic Fibrosis EpithelialCells .b-u 1645 to 2345 717 to 19   tiling clone, AAA   699/699
(100 %)
2 diff
(99.8 %id)
TI_154135351   .b-u 1657 to 2345 781 to 95   AAA   687/978
(70 %)
24 diff
(97.6 %id)
TI_154154753   .b-u 1683 to 2320 717 to 80     Submitted on the opposite strand 638/639
(99 %)
9 diff
(98.6 %id)
BM991995 Bone, Subchondral Bone .b-u 1735 to 2345 629 to 19   AAA   611/611
(100 %)
1 diff
(99.9 %id)
TI_154145137   .b-u 1742 to 2345 712 to 101   AAA Submitted on the opposite strand 612/613
(99 %)
29 diff
(95.3 %id)
AW500532 lymph .b-u 1774 to 2320 554 to 8     Submitted on the opposite strand 547/554
(98 %)
0 diff
(100 %id)
AU155231 ovary, tumor tissue .b-u 1786 to 2345 561 to 1       561/562
(99 %)
20 diff
(96.5 %id)
BM564995 insulinoma, Pancreas .b-u 1796 to 2142 1 to 347       347/347
(100 %)
5 diff
(98.6 %id)
CK905653 insulinoma, Pancreas .b-u 1796 to 2345 1 to 550   AAA   550/550
(100 %)
6 diff
(99.0 %id)
AI935827 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b-u 1815 to 2346 533 to 2   tiling clone,   532/533
(99 %)
0 diff
(100 %id)
TI_154168606   .b-u 1863 to 2345 576 to 94   AAA Submitted on the opposite strand 483/484
(99 %)
9 diff
(98.2 %id)
BM994083 lung, Metastatic Chondrosarcoma .b-u 1864 to 2345 500 to 19   AAA   482/482
(100 %)
1 diff
(99.8 %id)
CB131996 Liver .b-u 1876 to 2345 1 to 470   AAA   470/470
(100 %)
1 diff
(99.8 %id)
BX109668 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b-u 1894 to 2345 466 to 15   AAA   452/452
(100 %)
1 diff
(99.8 %id)
AI720141 colon .b-u 1927 to 2346 422 to 3       420/422
(99 %)
0 diff
(100 %id)
AI934307 adenocarcinoma, Pancreas .b-u 1935 to 2346 415 to 4       412/415
(99 %)
0 diff
(100 %id)
AW407220 lymph .b-u 1951 to 2345 422 to 28   AAA Submitted on the opposite strand 395/395
(100 %)
3 diff
(99.3 %id)
BM796278 stomach .b-u 2031 to 2338 1 to 308   AAA   308/308
(100 %)
2 diff
(99.4 %id)
CF138580 lymph .b-u 2035 to 2345 332 to 22   AAA Submitted on the opposite strand 311/311
(100 %)
1 diff
(99.7 %id)
AW386972 stomach .b-u 2065 to 2275 1 to 210       210/210
(100 %)
16 diff
(92.4 %id)
D25754   .b-u 2144 to 2346 1 to 203     Submitted on the opposite strand 203/205
(99 %)
4 diff
(98.1 %id)
CK905652 insulinoma, Pancreas .b-u 2219 to 2345 143 to 17   AAA   127/127
(100 %)
1 diff
(99.3 %id)
AK000392 ileal mucosa Gene C9orf167, variant not shown       available from FLJ, AAA Suspected internal deletion, this clone was ignored    
AA533138 normal prostatic epithelial cells, Prostate Gene C9orf167, variant not shown         This clone was ignored    
DB228762 trachea Gene C9orf167, variant not shown       capped This clone was ignored    
DB231373 trachea Gene C9orf167, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C