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Gene ALKBH4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
106 supporting clones for gene ALKBH4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG748277 eye, normal pigmented retinal epithelium .a 1 to 738 1 to 737   tiling clone,   737/737
(100 %)
3 diff
(99.6 %id)
BX353099 Neuroblastoma Cot 10-normalized .a 4 to 847 1 to 845       845/845
(100 %)
2 diff
(99.8 %id)
BU526881 epidermoid carcinoma, cell line, lung .a 6 to 783 1 to 782       782/929
(84 %)
31 diff
(96.7 %id)
BX387550 Neuroblastoma Cot 25-normalized .a 8 to 846 1 to 837       837/847
(98 %)
15 diff
(98.3 %id)
BG499127 adenocarcinoma, Prostate .a 12 to 805 1 to 791       791/796
(99 %)
27 diff
(96.7 %id)
BU541234 carcinoma, cell line, Prostate .a 12 to 650 150 to 791       642/1179
(54 %)
17 diff
(98.6 %id)
BM083633 adenocarcinoma, Prostate .a 13 to 544 1 to 531       531/531
(100 %)
1 diff
(99.9 %id)
AK222689 brain .a 15 to 1678 1 to 1664 A210V     1664/1664
(100 %)
5 diff
(99.7 %id)
BP213095 cerebrum .a 15 to 598 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP255668 Kidney .a 15 to 598 1 to 583       583/583
(100 %)
6 diff
(99.0 %id)
BP255671 Kidney .a 15 to 596 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA729454   .a 16 to 751 2 to 725   capped   728/725
(100 %)
19 diff
(97.4 %id)
DB035555 testis .a 16 to 574 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BP381675 adipose tissue .a 17 to 639 1 to 623       623/623
(100 %)
2 diff
(99.7 %id)
AK000020 adipose tissue .a 17 to 1522 1 to 1506 exact available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1506/1506
(100 %)
4 diff
(99.8 %id)
DA674330   .a 18 to 591 2 to 575   capped   574/577
(99 %)
1 diff
(99.9 %id)
BP375717 uterus .a 19 to 579 1 to 561       561/561
(100 %)
0 diff
(100 %id)
CR991325 T-Lymphocytes .a 20 to 605 1 to 593       593/598
(99 %)
11 diff
(98.2 %id)
DA908628   .a 20 to 583 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BQ425330 leiomyosarcoma, uterus .a 21 to 810 1 to 799       799/899
(88 %)
16 diff
(98.3 %id)
BP307387 brain .a 21 to 612 1 to 592       592/592
(100 %)
0 diff
(100 %id)
DA709964   .a 21 to 558 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA178074 amygdala .a 22 to 607 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DB121705 thymus .a 22 to 583 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
TI_57196461   .a 24 to 820 67 to 860       794/860
(92 %)
15 diff
(98.3 %id)
BX340913   .a 25 to 1042 1 to 1020 A6R E7X T8N E10R V11S ...     1020/1020
(100 %)
12 diff
(98.9 %id)
CD245837 White Matter .a 25 to 529 9 to 513       505/971
(52 %)
18 diff
(98.2 %id)
BM466722 eye, retinoblastoma .a 26 to 771 16 to 763       752/1203
(62 %)
24 diff
(98.1 %id)
BP264849 muscle .a 27 to 642 1 to 617       617/635
(97 %)
8 diff
(98.8 %id)
DA002424   .a 29 to 597 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA266941 caudate nucleus .a 29 to 577 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA481416   .a 29 to 565 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BI818567 pooled brain, lung, testis .a 29 to 820 1 to 789       789/789
(100 %)
9 diff
(98.9 %id)
CD513453 brain, Pituitary .a 30 to 807 1 to 786       786/940
(83 %)
10 diff
(99.0 %id)
DR007150 Spleen .a 31 to 670 1 to 640       640/640
(100 %)
4 diff
(99.4 %id)
DB451781.
matches multiple genes
testis .a 32 to 521 1 to 490     also hits gene PMS2L12andPRKRIP1andORAI2 490/492
(99 %)
3 diff
(99.4 %id)
AW247398 lung, small cell carcinoma .a 33 to 278 6 to 253       248/253
(98 %)
7 diff
(97.3 %id)
BE410070 choriocarcinoma, placenta .a 35 to 880 1 to 847       847/967
(87 %)
18 diff
(98.2 %id)
BC002820 Placenta, choriocarcinoma .a 37 to 1522 1 to 1486 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1486/1486
(100 %)
0 diff
(100 %id)
BC017096 Lung, small cell carcinoma .a 37 to 2079 1 to 2043 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2043/2043
(100 %)
0 diff
(100 %id)
BQ919302 carcinoma, cell line, Prostate .a 37 to 780 42 to 792       751/978
(76 %)
17 diff
(98.3 %id)
NM_017621.2   .a 37 to 2079 1 to 2043 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2043/2043
(100 %)
0 diff
(100 %id)
DN601669 human embryonic stem cells .a 38 to 696 1 to 659       659/659
(100 %)
0 diff
(100 %id)
CV026293 mixed .a 42 to 684 1 to 643       643/643
(100 %)
0 diff
(100 %id)
TI_1948103671   .a 42 to 560 128 to 652   fully sequenced,   525/652
(80 %)
7 diff
(99.0 %id)
TI_1948103815   .a 42 to 961 130 to 1053 A210G E212G A213G V215G D216G ... fully sequenced,   924/1053
(87 %)
47 diff
(95.6 %id)
TI_1948103955   .a 42 to 536 132 to 625   fully sequenced,   494/625
(79 %)
6 diff
(99.1 %id)
CR987345 T-Lymphocytes .a 45 to 652 1 to 609       609/618
(98 %)
2 diff
(99.7 %id)
BE384853 melanotic melanoma, skin .a 56 to 594 1 to 539       539/540
(99 %)
1 diff
(99.9 %id)
DB000938 breast, tumor tissue .a 180 to 718 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BM752761 Ascites, stomach .a 248 to 810 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
BM764940 Ascites, stomach .a 248 to 840 1 to 593       593/593
(100 %)
0 diff
(100 %id)
BF725596 eye, Iris .a 329 to 824 1 to 496     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 496/496
(100 %)
0 diff
(100 %id)
BI871315 adenocarcinoma, cell line, Liver .a 331 to 1125 1 to 796       796/802
(99 %)
7 diff
(99.2 %id)
TI_57228374   .a 331 to 1125 52 to 847       796/802
(99 %)
7 diff
(99.2 %id)
BI087608 cervix .a 339 to 1000 1 to 702       606/1084
(55 %)
27 diff
(97.6 %id)
BQ959688 leiomyosarcoma, uterus .a 416 to 1271 12 to 870       859/870
(98 %)
8 diff
(99.1 %id)
BQ059031 lymph, lymphoma, cell line .a 442 to 1484 1083 to 32     Submitted on the opposite strand 1052/1085
(96 %)
0 diff
(100 %id)
BM457449 embryonal carcinoma, cell line, testis .a 448 to 1271 1 to 827       827/1028
(80 %)
16 diff
(98.5 %id)
TI_1948103541   .a 479 to 949 611 to 129       483/1289
(37 %)
0 diff
(100 %id)
TI_1948103956   .a 506 to 957 569 to 118   fully sequenced,   452/569
(79 %)
5 diff
(99.2 %id)
BQ061858 lymph, lymphoma, cell line .a 518 to 1480 972 to 1     Submitted on the opposite strand 972/1002
(97 %)
35 diff
(96.6 %id)
TI_1948103672   .a 530 to 957 545 to 118   fully sequenced,   428/545
(78 %)
5 diff
(99.1 %id)
BQ065255 lymph, lymphoma, cell line .a 542 to 1481 953 to 1     Submitted on the opposite strand 953/1043
(91 %)
31 diff
(97.1 %id)
BQ058053 lymph, lymphoma, cell line .a 593 to 1481 896 to 1     Submitted on the opposite strand 896/943
(95 %)
18 diff
(98.1 %id)
BQ056123 lymph, lymphoma, cell line .a 601 to 1480 892 to 1     Submitted on the opposite strand 892/1005
(88 %)
25 diff
(97.6 %id)
BQ062719 lymph, lymphoma, cell line .a 601 to 1484 888 to 1     Submitted on the opposite strand 888/950
(93 %)
15 diff
(98.5 %id)
CD244757 White Matter .a 602 to 1423 1 to 823       823/874
(94 %)
5 diff
(99.5 %id)
BQ063043 lymph, lymphoma, cell line .a 622 to 1484 864 to 1     Submitted on the opposite strand 864/1026
(84 %)
9 diff
(99.2 %id)
TI_1948103816   .a 639 to 957 437 to 119   fully sequenced,   319/437
(72 %)
5 diff
(98.9 %id)
BF316187 brain, neuroblastoma .a 647 to 1347 1 to 701       701/1210
(57 %)
16 diff
(98.7 %id)
BF316159 brain, neuroblastoma .a 647 to 1402 1 to 741       741/938
(78 %)
36 diff
(96.2 %id)
BQ056173 lymph, lymphoma, cell line .a 665 to 1481 825 to 1     Submitted on the opposite strand 825/1021
(80 %)
19 diff
(98.2 %id)
BQ898813 lymph, lymphoma, cell line .a 670 to 1481 815 to 1     Submitted on the opposite strand 815/888
(91 %)
7 diff
(99.3 %id)
BQ058749 lymph, lymphoma, cell line .a 713 to 1481 772 to 1     Submitted on the opposite strand 772/1041
(74 %)
28 diff
(97.4 %id)
BX348524   .a 822 to 1267 1 to 448       448/597
(75 %)
10 diff
(98.4 %id)
CN427052 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 826 to 1285 1 to 460       460/460
(100 %)
0 diff
(100 %id)
BX348523   .a 827 to 1528 1 to 700       700/700
(100 %)
2 diff
(99.8 %id)
BM746235 stomach .a 872 to 1363 1 to 497       497/497
(100 %)
11 diff
(97.8 %id)
BM766100 stomach .a 872 to 1224 1 to 352       352/352
(100 %)
1 diff
(99.8 %id)
BM770478 stomach .a 873 to 1381 1 to 508       508/508
(100 %)
5 diff
(99.1 %id)
AA522500 lung, lung tumor .a 883 to 1471 580 to 1       580/823
(70 %)
23 diff
(97.3 %id)
TI_57239915   .a 886 to 1343 68 to 524   AAA   457/524
(87 %)
6 diff
(98.9 %id)
BI916383 brain .a 890 to 1343 1 to 453   AAA   453/453
(100 %)
1 diff
(99.8 %id)
CR735458 lymph, lymphoma, cell line .a 983 to 1484 538 to 37     Submitted on the opposite strand 502/538
(93 %)
0 diff
(100 %id)
AL121411 melanoma (MeWo cell line) .a 1004 to 1435 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
AA587078 colon, colon tumor RER+ .a 1051 to 1495 445 to 1       445/445
(100 %)
1 diff
(99.8 %id)
EL949189 eyeball .a 1052 to 1491 18 to 457       440/457
(96 %)
6 diff
(98.7 %id)
BF725595 eye, Iris .a 1069 to 1496 444 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 428/428
(100 %)
3 diff
(99.3 %id)
AA676875 whole brain .a 1082 to 1524 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
BI010242 leiomios .a 1113 to 1282 171 to 1       171/177
(96 %)
6 diff
(96.7 %id)
BQ300678 bladder_tumor .a 1113 to 1282 171 to 1       171/177
(96 %)
6 diff
(96.7 %id)
CN427051 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1117 to 1496 8 to 387   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 380/387
(98 %)
6 diff
(98.5 %id)
AI085814   .a 1118 to 1504 386 to 1       386/386
(100 %)
5 diff
(98.8 %id)
BX387549 Neuroblastoma Cot 25-normalized .a 1173 to 2072 899 to 1       899/899
(100 %)
10 diff
(98.9 %id)
BQ082221 Ascites, stomach .a 1326 to 1825 1 to 500       500/500
(100 %)
2 diff
(99.6 %id)
CA420615 Bone, Enchondroma cell line .a 1535 to 2123 607 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 589/589
(100 %)
0 diff
(100 %id)
BE831008 marrow .a 1554 to 1984 27 to 463       437/474
(92 %)
31 diff
(93.5 %id)
BE856121 Prostate .a 1601 to 1822 236 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 222/222
(100 %)
2 diff
(99.1 %id)
BG177943 adenocarcinoma, cell line, Prostate .a 1618 to 2106 1 to 489       489/499
(97 %)
5 diff
(99.0 %id)
BQ432971 melanotic melanoma, skin .b 1 to 760 15 to 579 H103P L104A D105P D106C A107W ... tiling clone, Suspected internal deletion 570/1002
(56 %)
25 diff
(97.6 %id)
AK026097   .c 1 to 1390 2 to 1391 exact tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1391/1391
(100 %)
1 diff
(100.0 %id)
BP255588 Kidney .c 1 to 583 2 to 584       584/584
(100 %)
0 diff
(100 %id)
DA348216 substantia nigra .c 3 to 554 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BQ226513 embryonal carcinoma, cell line, testis .d 1 to 566 1 to 570   tiling clone,   570/1049
(54 %)
8 diff
(99.3 %id)
AA579919 colon, colon tumor RER+ .d 520 to 864 345 to 1   tiling clone,   345/345
(100 %)
0 diff
(100 %id)
DA764637 tongue .e 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
DA093806 cerebellum .f 1 to 548 2 to 549 exact tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
BG992106 head_neck Gene ALKBH4, variant not shown         Suspected internal deletion, this clone was ignored    
DB310897 thalamus Gene ALKBH4, variant not shown         This clone was ignored    
DA371312 thalamus Gene ALKBH4, variant not shown       capped This clone was ignored    
CF453966 peripheral nervous system Gene ALKBH4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C