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Gene JMJD5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
119 supporting clones for gene JMJD5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK297166 brain .a 1 to 1612 1 to 1612 exact tiling clone,   1612/1612
(100 %)
2 diff
(99.9 %id)
DC349650 brain .a 1 to 493 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
NM_001145348.1   .a 1 to 2521 1 to 2521 exact RefSeq, AAA   2521/2521
(100 %)
0 diff
(100 %id)
DA050008   .b -10 to 541 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA866455 Prostate .b -10 to 542 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB057137 testis .b -10 to 520 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
BP198103 adrenal gland .b -8 to 573 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA201732 brain .b -8 to 567 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BX283857 lymph, lymphoma, cell line .b -8 to 499 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
DA079030 cerebellum .b 1 to 567 10 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA096754 cerebellum .b 1 to 543 10 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA383507 thalamus .b 1 to 543 10 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA534666 heart .b 1 to 549 10 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA962059 Spleen .b 1 to 531 10 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
AK225066 coronary artery .b 1 to 1868 7 to 1874 R61K     1874/1874
(100 %)
2 diff
(99.9 %id)
BP203173 coronary artery .b 1 to 576 7 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BQ057705 lymph, lymphoma, cell line .b 1 to 922 7 to 933       933/994
(93 %)
14 diff
(98.6 %id)
BQ066794 lymph, lymphoma, cell line .b 1 to 929 7 to 939   tiling clone,   939/1030
(91 %)
13 diff
(98.8 %id)
BP290933 lung .b 1 to 557 7 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DA915815 small intestine .b 1 to 630 8 to 638   capped   637/667
(95 %)
9 diff
(98.7 %id)
DR004311 placenta .b 1 to 705 22 to 726       710/726
(97 %)
29 diff
(96.1 %id)
DA587311 lung .b 1 to 559 6 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA925968 small intestine .b 1 to 573 6 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA162722 amygdala .b 1 to 543 4 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA482633   .b 1 to 577 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BM478152 lymph, lymphoma, cell line .b 11 to 974 1 to 976       973/1063
(91 %)
19 diff
(98.3 %id)
CR608978 Neuroblastoma Cot 50-normalized .b 13 to 2280 1 to 2268 exact tiling clone,   2268/2268
(100 %)
0 diff
(100 %id)
AL529811 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 13 to 1131 1 to 1113       1113/1113
(100 %)
15 diff
(98.7 %id)
BM919718 pooled pancreas and spleen .b 19 to 792 1 to 773       773/1004
(76 %)
3 diff
(99.8 %id)
DA482234   .b 54 to 567 2 to 516   capped   515/515
(100 %)
2 diff
(99.7 %id)
DA009439 adrenal gland .b 103 to 394 140 to 430   capped   429/429
(100 %)
1 diff
(99.8 %id)
AK023860 thyroid gland .b 103 to 2376 143 to 2416 D73G available from FLJ,   2416/2416
(100 %)
8 diff
(99.7 %id)
BC027911 Lung, Spleen, fetal, pooled .b 103 to 2373 131 to 2401 exact tiling clone, available from MGC, AAA   2401/2401
(100 %)
4 diff
(99.9 %id)
DA052237   .b 103 to 560 122 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA058086 cerebellum .b 103 to 540 143 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA150269 amygdala .b 103 to 531 143 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA159227 amygdala .b 103 to 531 143 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DA159240 amygdala .b 103 to 465 143 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
DA177950 amygdala .b 103 to 563 119 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA203577 brain .b 103 to 558 133 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA272843 caudate nucleus .b 103 to 533 118 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA295127 hippocampus .b 103 to 519 140 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA362883 subthalamic nucleus .b 103 to 529 134 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA372338 thalamus .b 103 to 513 140 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA497245 brain .b 103 to 522 152 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA557155   .b 103 to 507 144 to 549   capped   548/548
(100 %)
4 diff
(99.3 %id)
BI768810 pooled lung and spleen .b 103 to 884 131 to 916       916/920
(99 %)
29 diff
(96.9 %id)
BM922658 leukocyte .b 103 to 807 145 to 860       842/1059
(79 %)
26 diff
(97.6 %id)
BQ689669 ductal carcinoma, cell line, Pancreas .b 103 to 803 117 to 827       827/877
(94 %)
16 diff
(98.2 %id)
TI_57181471   .b 103 to 868 198 to 966       899/987
(91 %)
32 diff
(96.8 %id)
CB160363 Liver .b 103 to 559 116 to 572       572/572
(100 %)
0 diff
(100 %id)
NM_024773.2   .b 103 to 2422 152 to 2471 exact RefSeq, AAA   2471/2471
(100 %)
0 diff
(100 %id)
DA703895   .b 103 to 487 118 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA704729   .b 103 to 485 152 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA706707   .b 103 to 537 152 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA717942   .b 103 to 552 136 to 588   capped   587/587
(100 %)
5 diff
(99.2 %id)
DA783829 brain .b 103 to 550 140 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA790540 brain .b 103 to 432 137 to 467   capped   466/466
(100 %)
1 diff
(99.8 %id)
BP313669 mammary gland .b 103 to 568 118 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP314651 mammary gland .b 103 to 567 119 to 583       583/583
(100 %)
0 diff
(100 %id)
DA885349   .b 103 to 532 134 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA928847 small intestine .b 103 to 531 134 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA956203 Spleen .b 103 to 508 153 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BP345887 synovial membrane .b 103 to 561 121 to 579       579/579
(100 %)
3 diff
(99.5 %id)
DB011152 colon, tumor tissue .b 103 to 559 119 to 575   capped   574/575
(99 %)
1 diff
(99.9 %id)
DB056717 testis .b 103 to 513 119 to 533   capped   532/532
(100 %)
4 diff
(99.3 %id)
DB086439 testis .b 103 to 559 132 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
AU141170 thyroid gland .b 103 to 743 143 to 775   capped   774/776
(99 %)
19 diff
(97.6 %id)
CV029535 mixed .b 134 to 729 1 to 596       596/596
(100 %)
0 diff
(100 %id)
TI_1948093546   .b 134 to 786 129 to 790       662/1317
(50 %)
17 diff
(98.8 %id)
TI_1948093864   .b 134 to 803 133 to 804       672/1249
(53 %)
14 diff
(98.9 %id)
BM909509 lymph, lymphoma, cell line .b 255 to 780 260 to 795       536/1111
(48 %)
22 diff
(98.1 %id)
CV810236 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 668 to 1526 1 to 863       863/879
(98 %)
24 diff
(97.3 %id)
DA040016 bladder .b 770 to 1334 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BX329005 Neuroblastoma Cot 50-normalized .b 833 to 1390 554 to 1       554/554
(100 %)
6 diff
(99.0 %id)
BX329011.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 845 to 1371 530 to 6   fully sequenced, also hits gene C1QL4 525/539
(97 %)
4 diff
(99.3 %id)
W02940 melanocyte .b 1026 to 1526 1 to 511       511/533
(95 %)
18 diff
(96.7 %id)
AU158812 thyroid gland .b 1883 to 2376 498 to 1       498/503
(99 %)
17 diff
(96.7 %id)
DB331621 small intestine .b 1905 to 2422 521 to 1       521/526
(99 %)
31 diff
(94.2 %id)
N74545 melanocyte .b 2164 to 2373 212 to 2       211/217
(97 %)
0 diff
(100 %id)
BP211291 cerebellum .c 1 to 583 1 to 582   tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
BP296599   .c 513 to 1096 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DA356149 subthalamic nucleus .d 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
AY345239   .d 200 to 862 1 to 663 exact tiling clone,   663/663
(100 %)
0 diff
(100 %id)
BP338003 Spleen .e 1 to 580 1 to 580 G184X tiling clone,   580/580
(100 %)
0 diff
(100 %id)
AK310885 trachea .f 103 to 1048 130 to 1075 exact tiling clone,   1075/1075
(100 %)
0 diff
(100 %id)
DB224849 trachea .f 103 to 529 130 to 557 R119S G120W S121F capped   556/556
(100 %)
1 diff
(99.9 %id)
BP270368 small intestine .g 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
0 diff
(100 %id)
CB216288 normal endometrium, mid-secretory phase,cycle day 23, uterus .h 1 to 506 1 to 506 exact tiling clone,   506/506
(100 %)
2 diff
(99.7 %id)
CX166637 human embryonic stem cells differentiated toan early endodermal cell type .i 1 to 798 1 to 797 N2H tiling clone,   797/797
(100 %)
2 diff
(99.8 %id)
AI979310 pooled germ cell tumors .j 1 to 260 263 to 3 Q2R     261/263
(99 %)
1 diff
(99.7 %id)
AW589664 pooled germ cell tumors .j 1 to 260 262 to 3 exact tiling clone,   260/262
(99 %)
0 diff
(100 %id)
BE504642 pooled germ cell tumors .j 1 to 260 262 to 3 S23Y     260/262
(99 %)
1 diff
(99.7 %id)
BE504655 pooled germ cell tumors .j 1 to 260 262 to 3 A17D S23Y     260/262
(99 %)
2 diff
(99.3 %id)
DA925267 small intestine .k 1 to 582 2 to 583 exact tiling clone, capped   582/582
(100 %)
1 diff
(99.9 %id)
BF752746 breast_normal .l-u 1 to 176 174 to 1 W43G R44D tiling clone, Submitted on the opposite strand 174/174
(100 %)
2 diff
(98.9 %id)
AL563560 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .l-u 169 to 1209 1043 to 10   tiling clone,   1034/1051
(98 %)
0 diff
(100 %id)
CB051973 leiomyosarcoma, soft tissue .l-u 210 to 780 3 to 573   tiling clone, fully sequenced,   571/573
(99 %)
6 diff
(99.0 %id)
BM724364 eye, fetal eye .l-u 306 to 824 1 to 519   fully sequenced,   519/519
(100 %)
1 diff
(99.9 %id)
CB158529 Liver .l-u 352 to 917 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
T84278 liver and spleen .l-u 392 to 866 1 to 487       487/487
(100 %)
37 diff
(92.5 %id)
AA383674 testis .l-u 571 to 790 1 to 220       220/220
(100 %)
1 diff
(99.6 %id)
AW966415   .l-u 586 to 1158 18 to 593   tiling clone,   576/593
(97 %)
6 diff
(99.0 %id)
TI_154151805   .l-u 637 to 1310 746 to 80     Submitted on the opposite strand 667/669
(99 %)
25 diff
(96.3 %id)
BU689901 Human Lung Epithelial cells, lung .l-u 637 to 1355 737 to 19   AAA   719/719
(100 %)
5 diff
(99.4 %id)
CB051972 leiomyosarcoma, soft tissue .l-u 750 to 1307 583 to 27   fully sequenced, AAA   557/557
(100 %)
3 diff
(99.5 %id)
BU741638 eye, fetal eye .l-u 794 to 1310 534 to 19   fully sequenced, AAA   516/516
(100 %)
4 diff
(99.3 %id)
TI_154068853   .l-u 834 to 1308 584 to 98       487/585
(83 %)
0 diff
(100 %id)
BU430384 lymph .l-u 846 to 1314 472 to 4     Submitted on the opposite strand 469/472
(99 %)
0 diff
(100 %id)
BI090168 cervix .l-u 882 to 1307 1 to 426   AAA   426/426
(100 %)
2 diff
(99.6 %id)
AI122764 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l-u 888 to 1354 467 to 1       467/467
(100 %)
3 diff
(99.4 %id)
AW276493 lung, two pooled squamous cell carcinomas .l-u 901 to 1310 417 to 8       410/417
(98 %)
0 diff
(100 %id)
AI288219 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l-u 906 to 1311 419 to 14   AAA   406/406
(100 %)
3 diff
(99.3 %id)
AI401500 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l-u 951 to 1311 374 to 14   AAA   361/361
(100 %)
1 diff
(99.8 %id)
BQ022832 placenta .l-u 989 to 1360 390 to 19   tiling clone, AAA   372/372
(100 %)
0 diff
(100 %id)
CN259431 embryonic stem cells, cell lines H1, H7, andH9 .l-u 996 to 1360 375 to 11     Submitted on the opposite strand 365/375
(97 %)
0 diff
(100 %id)
AK308499 breast .m 1 to 1036 2 to 1037 exact tiling clone,   1037/1037
(100 %)
0 diff
(100 %id)
DA035164 breast .m 1 to 565 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
CN259430 embryonic stem cells, cell lines H1, H7, andH9 .n 103 to 761 133 to 792 S179F W180V F181V L182P R183E ... tiling clone,   787/792
(99 %)
7 diff
(99.2 %id)
BX497544 Liver .o-u 1 to 606 1 to 606 R10T Q14H tiling clone,   606/606
(100 %)
3 diff
(99.6 %id)
DA637630 Liver .p 1 to 560 2 to 561 exact tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BF366365 nervous_tumor .q-u 1 to 205 1 to 205 exact tiling clone,   205/213
(96 %)
3 diff
(98.6 %id)
AK298410 Liver Gene JMJD5, variant not shown         Suspected internal deletion, this clone was ignored    
DA638291 Liver Gene JMJD5, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o-u, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI