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Gene CCDC121TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
68 supporting clones for gene CCDC121 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB462350 testis .a 1 to 485 1 to 485   tiling clone,   485/485
(100 %)
0 diff
(100 %id)
DB452051 testis .a 187 to 677 1 to 491       491/491
(100 %)
1 diff
(99.8 %id)
BC066969 testis .a 196 to 1666 1 to 1471 exact tiling clone, available from MGC, AAA   1471/1471
(100 %)
1 diff
(100.0 %id)
NM_001142683.2   .a 196 to 2957 1 to 2762 exact RefSeq,   2762/2762
(100 %)
0 diff
(100 %id)
DB445043 testis .a 213 to 644 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
DB445846 testis .a 213 to 670 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
DB443659 testis .a 447 to 894 1 to 447       447/447
(100 %)
1 diff
(99.8 %id)
CN259918 embryonic stem cells, DMSO-treated H9 cellline .a 1665 to 2217 1 to 553   tiling clone,   553/553
(100 %)
0 diff
(100 %id)
BF037560 adenocarcinoma, ovary .a 1682 to 2424 1 to 728       728/925
(78 %)
21 diff
(97.8 %id)
BF977151 melanotic melanoma, high MDR, skin .a 1887 to 2605 1 to 701       701/851
(82 %)
33 diff
(96.2 %id)
BI481044 Native Retinal Pigment Epithelium sheets, retina .a 1910 to 2557 12 to 659       648/659
(98 %)
6 diff
(99.1 %id)
BU569176 testis .a 2056 to 2585 1 to 539       539/884
(60 %)
32 diff
(96.4 %id)
CR739469   .a 2102 to 2889 1 to 788   tiling clone,   788/789
(99 %)
3 diff
(99.7 %id)
BE972835 testis .a 2131 to 2667 127 to 654       528/885
(59 %)
6 diff
(99.4 %id)
BI755775 brain .a 2164 to 2930 1 to 776       776/785
(98 %)
40 diff
(95.0 %id)
TI_57216991   .a 2164 to 2930 30 to 805       776/814
(95 %)
40 diff
(95.1 %id)
AW976299   .a 2186 to 2933 750 to 1     Submitted on the opposite strand 750/750
(100 %)
8 diff
(99.0 %id)
DB517582 testis .a 2460 to 2933 1 to 469     Submitted on the opposite strand 469/470
(99 %)
13 diff
(97.3 %id)
DB527781 testis .a 2461 to 2950 1 to 490     Submitted on the opposite strand 490/492
(99 %)
1 diff
(99.8 %id)
AI400634 pooled .a 2475 to 2953 484 to 6       479/484
(98 %)
0 diff
(100 %id)
AA648537 germinal center B cell .a 2478 to 2934 467 to 11   AAA   457/457
(100 %)
1 diff
(99.8 %id)
AI686937 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2501 to 2936 437 to 1       437/437
(100 %)
2 diff
(99.6 %id)
DB554665 hypothalamus .a 2504 to 2953 1 to 449   tiling clone, Submitted on the opposite strand 449/453
(99 %)
8 diff
(98.3 %id)
AW148642 brain, tumor, 5 pooled (see description) .a 2516 to 3023 510 to 2   tiling clone,   509/510
(99 %)
0 diff
(100 %id)
DB508618 testis .a 2519 to 2940 1 to 423     Submitted on the opposite strand 423/423
(100 %)
6 diff
(98.6 %id)
DB512682 testis .a 2530 to 2950 1 to 424     Submitted on the opposite strand 424/426
(99 %)
4 diff
(99.1 %id)
DB509172 testis .a 2652 to 2940 79 to 366     Submitted on the opposite strand 288/366
(78 %)
6 diff
(98.4 %id)
AA778728   .a 2683 to 2939 260 to 4       257/260
(98 %)
0 diff
(100 %id)
DB510876 testis .a 2694 to 2952 1 to 259     Submitted on the opposite strand 259/259
(100 %)
10 diff
(96.2 %id)
AK124337 uterus .b-u 1 to 3340 1 to 3341 exact tiling clone, available from FLJ,   3341/3341
(100 %)
3 diff
(100.0 %id)
DB249542 uterus .b-u 2 to 558 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DB351029 uterus .b-u 2774 to 3340 569 to 1   tiling clone,   569/569
(100 %)
3 diff
(99.5 %id)
DB444296 testis .c 1 to 464 1 to 466   tiling clone,   466/466
(100 %)
4 diff
(99.2 %id)
NM_024584.4   .c 1 to 2361 1 to 2361 exact RefSeq,   2361/2361
(100 %)
0 diff
(100 %id)
AK125354   .c 20 to 2361 1 to 2342 exact tiling clone, available from FLJ,   2342/2342
(100 %)
1 diff
(100.0 %id)
DB485618 hypothalamus .c 20 to 435 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
DA751642   .c 21 to 344 2 to 325   capped   324/324
(100 %)
0 diff
(100 %id)
BU569130 testis .c 29 to 651 1 to 626       626/792
(79 %)
7 diff
(99.2 %id)
BU930294 Prostate .c 29 to 616 1 to 588   available from MGC,   588/844
(69 %)
9 diff
(99.0 %id)
CN483986 eye .c 32 to 647 1 to 616       616/616
(100 %)
0 diff
(100 %id)
BC056244 Prostate .c 32 to 623 5 to 596   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 592/615
(96 %)
3 diff
(99.6 %id)
BG772082 testis .c 41 to 924 1 to 876       876/980
(89 %)
13 diff
(98.7 %id)
BF966257 brain, hippocampus .c 43 to 732 1 to 693       693/696
(99 %)
14 diff
(98.0 %id)
BC066936 Brain, hippocampus .c 48 to 2356 1 to 2309 exact tiling clone, available from MGC, AAA   2309/2309
(100 %)
4 diff
(99.9 %id)
DB447637 testis .c 49 to 476 1 to 428       428/428
(100 %)
0 diff
(100 %id)
DA748849   .c 50 to 414 2 to 366   capped   365/365
(100 %)
0 diff
(100 %id)
CN259919 embryonic stem cells, DMSO-treated H9 cellline .c 63 to 791 1 to 729       729/729
(100 %)
0 diff
(100 %id)
TI_1948208959   .c 194 to 374 119 to 299   fully sequenced,   181/201
(90 %)
5 diff
(97.6 %id)
TI_1948209298   .c 194 to 687 121 to 625   fully sequenced,   505/625
(80 %)
12 diff
(98.1 %id)
EL734186 mixed .c 201 to 905 1 to 705       705/705
(100 %)
0 diff
(100 %id)
TI_1948208790   .c 201 to 1041 128 to 969 T219Y Q220S H222P E238G S239V ... fully sequenced,   842/969
(86 %)
6 diff
(99.4 %id)
TI_1948209124   .c 201 to 1038 128 to 972 Q212P T217R A218V Q220L L223F ... fully sequenced,   845/972
(86 %)
6 diff
(99.4 %id)
TI_1948208960   .c 344 to 1042 820 to 119   fully sequenced,   702/820
(85 %)
16 diff
(98.1 %id)
TI_1948208791   .c 438 to 1042 730 to 118   fully sequenced,   613/730
(83 %)
14 diff
(98.1 %id)
TI_1948209125   .c 495 to 1042 671 to 120   fully sequenced,   552/671
(82 %)
13 diff
(98.1 %id)
AK023708 placenta .c 505 to 2338 1 to 1834   available from FLJ,   1834/1834
(100 %)
1 diff
(100.0 %id)
AU139784 placenta .c 506 to 1244 2 to 741   capped   740/744
(99 %)
7 diff
(99.1 %id)
CU447102 epidermis .c 627 to 935 324 to 16     Submitted on the opposite strand 309/327
(94 %)
0 diff
(100 %id)
CU450397 epidermis .c 627 to 935 324 to 16     Submitted on the opposite strand 309/327
(94 %)
0 diff
(100 %id)
CU455621 epidermis .c 627 to 936 324 to 15     Submitted on the opposite strand 310/327
(94 %)
0 diff
(100 %id)
TI_1948209299   .c 657 to 1042 507 to 120   fully sequenced,   388/507
(76 %)
7 diff
(98.7 %id)
H08083 whole brain .c 1018 to 1397 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
BX095833 whole brain .c 1019 to 1560 1 to 540       540/540
(100 %)
3 diff
(99.5 %id)
R12438 whole brain .c 1019 to 1370 1 to 361       361/367
(98 %)
17 diff
(95.4 %id)
H12960 whole brain .c 1019 to 1331 1 to 315       315/327
(96 %)
4 diff
(98.8 %id)
H08310 whole brain .c 1019 to 1550 1 to 538       538/546
(98 %)
18 diff
(96.8 %id)
AU158177 placenta .c 1742 to 2338 595 to 1       595/595
(100 %)
19 diff
(96.9 %id)
H08212 whole brain .c 1968 to 2343 395 to 4       392/395
(99 %)
0 diff
(100 %id)
H05599 whole brain .c 1975 to 2343 377 to 4       374/377
(99 %)
0 diff
(100 %id)
H08084 whole brain .c 1981 to 2343 371 to 4       368/378
(97 %)
0 diff
(100 %id)
R37326 whole brain .c 2008 to 2343 343 to 5       339/346
(97 %)
0 diff
(100 %id)
DB325100   .c 2131 to 2361 231 to 1       231/231
(100 %)
1 diff
(99.6 %id)
CD358463 testis .d 1 to 697 1 to 700       700/934
(74 %)
33 diff
(96.5 %id)
DB044538 testis .d 9 to 567 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BI464992 testis .d 18 to 509 1 to 494 H110T S111Q C112L R113P D114*     927/943
(98 %)
67 diff
(92.9 %id)
BG771487 testis .d 26 to 844 1 to 818   tiling clone,   818/818
(100 %)
7 diff
(99.2 %id)
TI_44347912   .d 35 to 778 81 to 825       745/825
(90 %)
7 diff
(99.2 %id)
BI559653 testis .d 39 to 778 1 to 741       741/741
(100 %)
5 diff
(99.4 %id)
AV691173 hepatocellular carcinoma Gene CCDC121, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C