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Gene FAM161ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene FAM161A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX648834 human colon endothel primary cell culture .a 1 to 3763 1 to 3763 I107M E145G tiling clone, available from DKFZ, AAA   3763/3763
(100 %)
11 diff
(99.8 %id)
BQ215453 embryonal carcinoma, cell line, testis .a 901 to 1756 1 to 856   tiling clone,   856/856
(100 %)
4 diff
(99.6 %id)
BU542254 carcinoma, cell line, Prostate .a 926 to 1706 1 to 788       788/939
(83 %)
18 diff
(98.1 %id)
CV416583 placenta_normal .a 1618 to 1763 1 to 144       144/146
(98 %)
16 diff
(89.1 %id)
DC325141 brain .b 1 to 599 1 to 599   tiling clone,   599/599
(100 %)
2 diff
(99.7 %id)
DB445842 testis .b 382 to 1036 1 to 655   tiling clone,   655/656
(99 %)
6 diff
(99.1 %id)
NM_032180.2   .b 382 to 4073 1 to 3692 exact RefSeq,   3692/3692
(100 %)
1 diff
(100.0 %id)
DC398889 testis .b 382 to 938 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
DC396435 testis .b 399 to 974 1 to 576       576/576
(100 %)
4 diff
(99.4 %id)
DB449900 testis .b 457 to 1167 1 to 711       711/711
(100 %)
7 diff
(99.1 %id)
BX649029 human retina .b 471 to 4065 1 to 3596 L102M I107M E304G tiling clone, available from DKFZ, AAA   3596/3596
(100 %)
10 diff
(99.8 %id)
DR002362 fetal brain .b 480 to 1226 1 to 741       741/744
(99 %)
13 diff
(98.3 %id)
DA186984 amygdala .b 484 to 972 2 to 490   capped   489/489
(100 %)
1 diff
(99.8 %id)
DA808040 brain .b 484 to 972 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DA129832 alzheimer cortex .b 491 to 1028 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DW454236 Liver .b 492 to 656 18 to 182       165/182
(90 %)
9 diff
(95.1 %id)
DR002225 fetal brain .b 497 to 1155 1 to 658       658/661
(99 %)
9 diff
(98.7 %id)
DC417314 trachea .b 497 to 1069 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
CN280340 embryonic stem cells, DMSO-treated H9 cellline .b 499 to 972 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
DA516201 brain .b 548 to 1090 2 to 546   capped   545/545
(100 %)
3 diff
(99.5 %id)
BC107162 PCR rescued clones .b 610 to 2538 1 to 1926   tiling clone,   1926/1926
(100 %)
3 diff
(99.9 %id)
BC107163 PCR rescued clones .b 610 to 2538 1 to 1929       1929/1929
(100 %)
2 diff
(99.9 %id)
CN280341 embryonic stem cells, DMSO-treated H9 cellline .b 707 to 1188 1 to 482       482/484
(99 %)
5 diff
(99.0 %id)
AK296255 thalamus .b 848 to 2709 1 to 1862       1862/1862
(100 %)
2 diff
(99.9 %id)
DC341466 thalamus .b 848 to 1361 1 to 514       514/514
(100 %)
0 diff
(100 %id)
DW436262 Liver .b 848 to 1084 17 to 253       237/253
(93 %)
10 diff
(96.1 %id)
DA163783 amygdala .b 850 to 1438 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
CD299162 Blood vessels - aorta, basilar and artery .b 917 to 1619 1 to 720       720/791
(91 %)
32 diff
(96.0 %id)
G65708   .b 948 to 1111 164 to 1     Submitted on the opposite strand 164/164
(100 %)
0 diff
(100 %id)
AA580947 bulk germ cell seminoma .b 1352 to 1537 188 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 186/188
(98 %)
0 diff
(100 %id)
DA143496 alzheimer cortex .b 1543 to 2102 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
AW903168 nervous_normal .b 2076 to 2298 1 to 223       223/231
(96 %)
3 diff
(98.8 %id)
BG183985   .b 2164 to 2981 1 to 813       813/814
(99 %)
34 diff
(95.9 %id)
BQ640161 eye, retina .b 2194 to 2815 1 to 621       621/621
(100 %)
2 diff
(99.7 %id)
BM706877 eye, optic nerve .b 2208 to 2821 9 to 622       614/622
(98 %)
7 diff
(98.9 %id)
CN260564 embryonic stem cells, cell lines H1, H7, andH9 .b 2337 to 2610 1 to 275       275/275
(100 %)
1 diff
(99.7 %id)
BF695175 muscle (skeletal) .b 2440 to 3112 1 to 666       666/788
(84 %)
28 diff
(96.5 %id)
DR158174 human embryonic stem cells differentiated toan early endodermal cell type .b 2492 to 3247 1 to 756       756/756
(100 %)
0 diff
(100 %id)
CD678265 eye, Trabecular meshwork .b 3201 to 3766 1 to 566   tiling clone,   566/566
(100 %)
0 diff
(100 %id)
BF572354 melanotic melanoma, high MDR, skin .b 3331 to 4071 1 to 736   AAA   736/736
(100 %)
14 diff
(98.1 %id)
BU742300 eye, fetal eye .b 3419 to 4066 666 to 19   AAA   648/648
(100 %)
1 diff
(99.9 %id)
AA319279 adrenal gland .b 3502 to 3669 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
AW964482   .b 3528 to 3937 1 to 410       410/410
(100 %)
0 diff
(100 %id)
AA425325.
matches multiple genes
  .b 3596 to 4067 477 to 5   tiling clone, also hits gene haho 473/477
(99 %)
0 diff
(100 %id)
AI690681 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 3646 to 4071 440 to 14   tiling clone, AAA   427/427
(100 %)
1 diff
(99.8 %id)
DW417180 Liver .b 3728 to 4017 16 to 307       292/307
(95 %)
6 diff
(98.1 %id)
BX953243   .b 3817 to 4061 1 to 245   AAA   245/245
(100 %)
0 diff
(100 %id)
AI954412 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3836 to 4066 263 to 33   AAA   231/231
(100 %)
3 diff
(98.8 %id)
AK310908 trachea .c 1 to 2192 1 to 2192 I231V L373R M583V N588S R593G ... tiling clone,   2192/2192
(100 %)
27 diff
(98.8 %id)
DB048613 testis .d 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
3 diff
(99.5 %id)
BC036448 testis .d 34 to 3611 6 to 3582 I46V tiling clone, available from MGC, AAA   3577/3577
(100 %)
8 diff
(99.8 %id)
BG717204 testis .d 34 to 623 6 to 596   available from MGC,   591/597
(98 %)
11 diff
(98.2 %id)
W28225 eye, retina .d 287 to 786 526 to 17       510/590
(86 %)
17 diff
(97.2 %id)
AK023367 ovary, tumor tissue .e 1 to 1896 2 to 1897   tiling clone, available from FLJ,   1897/1897
(100 %)
4 diff
(99.8 %id)
AU134161 ovary, tumor tissue .e 1 to 737 2 to 737   capped   736/736
(100 %)
4 diff
(99.5 %id)
AU155259 ovary, tumor tissue .e 1341 to 1896 554 to 1       554/554
(100 %)
11 diff
(98.1 %id)
DB515210 testis .e 1738 to 2438 1 to 702     Submitted on the opposite strand 702/702
(100 %)
7 diff
(99.1 %id)
DB510870 testis .e 1791 to 2438 1 to 648   tiling clone, Submitted on the opposite strand 648/648
(100 %)
1 diff
(99.9 %id)
CD359154 testis .e 1866 to 2506 1 to 642   tiling clone,   642/907
(70 %)
8 diff
(99.2 %id)
CV574626 cornea, eye .e 1956 to 2570 1 to 617   tiling clone,   617/617
(100 %)
4 diff
(99.4 %id)
BF811699 colon_ins .f 1 to 354 9 to 362 I17V I49M F54L K87N E97V tiling clone,   354/362
(97 %)
11 diff
(97.0 %id)
N20913 melanocyte .g 1 to 419 424 to 1   tiling clone,   424/424
(100 %)
6 diff
(98.6 %id)
H93765.
matches multiple genes
eye, retina .g 53 to 388 348 to 1   tiling clone, also hits gene TMEM98 348/361
(96 %)
16 diff
(95.6 %id)
BF110321 carcinoid, lung .g 172 to 630 466 to 8 exact tiling clone,   459/466
(98 %)
0 diff
(100 %id)
AI700529 carcinoid, lung .g 179 to 630 455 to 4 exact     455/455
(100 %)
0 diff
(100 %id)
AI914090 carcinoid, lung .g 232 to 630 402 to 4 exact     402/402
(100 %)
0 diff
(100 %id)
BQ361833 ovary .g 235 to 467 235 to 2       234/235
(99 %)
0 diff
(100 %id)
AA928868 carcinoid, lung .g 250 to 630 384 to 4 exact     384/384
(100 %)
1 diff
(99.8 %id)
G44364   .g 274 to 413 140 to 1     Submitted on the opposite strand 140/140
(100 %)
1 diff
(99.3 %id)
BX509886   .h-u 1 to 561 7 to 567 exact tiling clone,   567/567
(100 %)
3 diff
(99.5 %id)
DB316381 brain Gene FAM161A, variant not shown         Suspected internal deletion, this clone was ignored    
DA512519 brain Gene FAM161A, variant not shown       capped Suspected internal deletion, this clone was ignored    
AK091575 brain Gene FAM161A, variant not shown       available from FLJ, This clone was ignored    
CR745944   Gene FAM161A, variant not shown              
AW903227 nervous_normal Gene FAM161A, variant not shown         Suspected internal deletion, this clone was ignored    
AA017567 eye, retina Gene FAM161A, variant not shown              
AA017660 eye, retina Gene FAM161A, variant not shown              
AA021141 eye, retina Gene FAM161A, variant not shown              
CX751106 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass Gene FAM161A, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI