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Gene RPAP2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
118 supporting clones for gene RPAP2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC039014 Brain, adult medulla .a 1 to 2245 1 to 2245 exact tiling clone, available from MGC, AAA   2245/2245
(100 %)
0 diff
(100 %id)
BM559559 brain, medulla .a 1 to 902 1 to 903       903/1030
(87 %)
17 diff
(98.4 %id)
NM_024813.2   .a 1 to 3112 1 to 3112 exact RefSeq,   3112/3112
(100 %)
0 diff
(100 %id)
BI918676 brain .a 45 to 652 24 to 631       608/631
(96 %)
7 diff
(98.9 %id)
TI_57241023   .a 45 to 652 24 to 631       608/631
(96 %)
7 diff
(98.9 %id)
DB105056 thymus .a 60 to 616 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CD705420 normal nasopharynx .a 69 to 581 23 to 537       515/537
(95 %)
15 diff
(97.3 %id)
BX419669 brain, fetal brain .a 69 to 996 1 to 924       924/929
(99 %)
11 diff
(98.9 %id)
AK023212   .a 84 to 3109 1 to 3026 Y467C available from FLJ,   3026/3026
(100 %)
3 diff
(100.0 %id)
CD109706 Human Placenta, placenta .a 84 to 834 24 to 779       756/779
(97 %)
23 diff
(97.1 %id)
AU131854   .a 85 to 966 2 to 892   capped   891/891
(100 %)
13 diff
(98.6 %id)
AL712035 human skeletal muscle .a 87 to 373 1 to 288       288/288
(100 %)
2 diff
(99.4 %id)
DN997646 breast cancer, Mammary gland (cancer tissue) .a 88 to 685 1 to 597       597/597
(100 %)
6 diff
(99.0 %id)
BI668669 brain, hypothalamus .a 90 to 653 1 to 566       564/566
(99 %)
10 diff
(98.3 %id)
AK225054 adipose tissue .a 92 to 1985 4 to 1897 Y87C F223L     1894/1897
(99 %)
11 diff
(99.5 %id)
CD689049 normal nasopharynx .a 92 to 610 12 to 530       519/530
(97 %)
6 diff
(98.9 %id)
BX460140 brain, fetal brain .a 95 to 1137 1 to 1032       1032/1032
(100 %)
30 diff
(97.1 %id)
DB488428 hypothalamus .a 95 to 558 1 to 463       463/463
(100 %)
7 diff
(98.5 %id)
BP245324 Kidney .a 95 to 677 1 to 582       582/588
(98 %)
2 diff
(99.7 %id)
CF993774 Human Placenta, placenta .a 95 to 868 28 to 805       778/824
(94 %)
14 diff
(98.4 %id)
TI_44344853   .a 95 to 653 88 to 648       559/648
(86 %)
12 diff
(98.2 %id)
BP269494 thyroid .a 95 to 662 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
DA070968 cerebellum .a 96 to 668 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA236555 brain .a 96 to 666 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA567745   .a 96 to 559 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA600539   .a 96 to 666 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA708149   .a 96 to 633 2 to 540   capped   539/552
(97 %)
1 diff
(99.9 %id)
DA713792   .a 96 to 664 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA747110   .a 96 to 660 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA816404   .a 96 to 669 2 to 576   capped   575/576
(99 %)
2 diff
(99.7 %id)
DB006189 breast, tumor tissue .a 96 to 633 2 to 540   capped   539/540
(99 %)
2 diff
(99.7 %id)
DB081808 testis .a 96 to 640 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BP229179 brain .a 100 to 683 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA540314 lung .a 102 to 685 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA700960   .a 102 to 629 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
TI_1948080328   .a 109 to 1110 126 to 1129       1004/1293
(77 %)
52 diff
(96.0 %id)
TI_1948157070   .a 109 to 1055 140 to 1087   fully sequenced,   948/1087
(87 %)
46 diff
(95.8 %id)
TI_1948157216   .a 109 to 1099 133 to 1113   fully sequenced,   981/1113
(88 %)
38 diff
(96.6 %id)
CR613797 B cells (Ramos cell line) Cot 25-normalized .a 110 to 3069 1 to 2960 exact tiling clone,   2960/2960
(100 %)
0 diff
(100 %id)
AL561463 B cells from Burkitt lymphoma .a 110 to 1094 1 to 984       984/984
(100 %)
5 diff
(99.5 %id)
EL733746 mixed .a 110 to 757 1 to 648       648/648
(100 %)
0 diff
(100 %id)
TI_57180400   .a 110 to 906 33 to 829       797/829
(96 %)
9 diff
(99.0 %id)
BX359788 Placenta Cot 25-normalized .a 111 to 1113 1 to 987       987/1019
(96 %)
17 diff
(98.4 %id)
BI759067 pooled colon, kidney, stomach .a 111 to 905 1 to 798       798/798
(100 %)
7 diff
(99.2 %id)
TI_57146210   .a 111 to 905 38 to 835       798/835
(95 %)
13 diff
(98.5 %id)
BI768033 pooled lung and spleen .a 112 to 906 1 to 795       795/795
(100 %)
3 diff
(99.7 %id)
AI198962   .a 141 to 507 371 to 5       367/371
(98 %)
0 diff
(100 %id)
BE869363 adenocarcinoma, colon .a 141 to 807 1 to 666       666/918
(72 %)
16 diff
(98.3 %id)
BF806349 colon_ins .a 143 to 518 8 to 385       378/385
(98 %)
13 diff
(96.7 %id)
CN259364 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 151 to 939 1 to 789       789/789
(100 %)
8 diff
(99.0 %id)
CR984479 T-Lymphocytes .a 209 to 1105 1 to 896       896/896
(100 %)
3 diff
(99.7 %id)
BP425928 small intestine .a 229 to 394 1 to 166     Submitted on the opposite strand 166/166
(100 %)
1 diff
(99.4 %id)
BQ214948 melanotic melanoma, skin .a 374 to 880 1 to 512       512/1269
(40 %)
12 diff
(99.1 %id)
CN259362 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 476 to 991 37 to 551       515/551
(93 %)
6 diff
(99.0 %id)
BF131088 hypernephroma, Kidney .a 673 to 1378 1 to 713       713/804
(88 %)
45 diff
(94.5 %id)
DA328107 hippocampus .a 676 to 1231 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
CR738366 pooled germ cell tumors .a 698 to 1170 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
BF698912 brain, primitive neuroectoderm .a 779 to 1393 1 to 608   AAA   608/838
(72 %)
20 diff
(97.7 %id)
DA209146 brain .a 825 to 1383 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
BQ424133 melanotic melanoma, skin .a 871 to 1698 24 to 854       831/854
(97 %)
14 diff
(98.4 %id)
H72617 liver and spleen .a 899 to 1321 1 to 432       432/432
(100 %)
13 diff
(97.0 %id)
BM800679 leiomyosarcoma, uterus .a 965 to 1854 36 to 925       890/1111
(80 %)
19 diff
(98.3 %id)
BX390946   .a 971 to 1797 36 to 862       827/862
(95 %)
6 diff
(99.4 %id)
TI_1948157071   .a 1025 to 1947 1061 to 126   fully sequenced,   937/1062
(88 %)
22 diff
(98.0 %id)
TI_1948157217   .a 1069 to 1947 1011 to 126   fully sequenced,   887/1012
(87 %)
11 diff
(99.0 %id)
BM720150 eye, fetal eye .a 1185 to 1678 11 to 505   fully sequenced,   495/505
(98 %)
6 diff
(98.9 %id)
BE004967 breast_normal .a 1213 to 1724 20 to 535       516/535
(96 %)
14 diff
(97.4 %id)
BE004935 breast_normal .a 1218 to 1796 23 to 602       580/602
(96 %)
9 diff
(98.6 %id)
BX359787 Placenta Cot 25-normalized .a 1228 to 2195 965 to 1       965/1041
(92 %)
4 diff
(99.7 %id)
CN259363 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1243 to 2005 9 to 772       764/772
(98 %)
7 diff
(99.1 %id)
AA227530 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1271 to 1693 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AA233098 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1272 to 1701 1 to 430       430/430
(100 %)
1 diff
(99.8 %id)
BX372311   .a 1314 to 2278 973 to 7       967/973
(99 %)
23 diff
(97.7 %id)
BI257183 cervical carcinoma cell line, cervix .a 1333 to 1958 32 to 662       631/682
(92 %)
21 diff
(97.0 %id)
BG619268 placenta .a 1450 to 2251 1 to 797   AAA   797/797
(100 %)
16 diff
(98.0 %id)
CB243643 Human Lung Epithelial cells, lung .a 1541 to 2255 730 to 16   AAA   715/715
(100 %)
0 diff
(100 %id)
CN479576 Chondrosarcoma, Left Pubic Bone .a 1541 to 2264 723 to 1       723/723
(100 %)
7 diff
(99.1 %id)
BX412890 brain, fetal brain .a 1563 to 2254 693 to 3       691/693
(99 %)
11 diff
(98.5 %id)
BM672068 eye, fetal eye .a 1617 to 2264 647 to 1   fully sequenced,   647/647
(100 %)
7 diff
(99.0 %id)
BI049999 placenta_normal .a 1675 to 1931 1 to 258       258/258
(100 %)
5 diff
(98.1 %id)
AI609064 ovary, tumor, 5 pooled (see description) .a 1808 to 2261 455 to 2       454/455
(99 %)
0 diff
(100 %id)
AI674631 pooled .a 1831 to 2247 419 to 2       418/419
(99 %)
0 diff
(100 %id)
AI188563 placenta .a 1836 to 2247 417 to 6       412/417
(98 %)
0 diff
(100 %id)
DB557797 hypothalamus .a 1881 to 2245 1 to 363   AAA Submitted on the opposite strand 363/363
(100 %)
8 diff
(97.8 %id)
BF510344   .a 1898 to 2252 372 to 18   AAA   355/356
(99 %)
2 diff
(99.5 %id)
AI806114 pooled .a 1964 to 2414 456 to 6       451/456
(98 %)
0 diff
(100 %id)
AA770422   .a 1980 to 2257 278 to 1       278/278
(100 %)
0 diff
(100 %id)
FN161326 breast carcinoma .a 1987 to 2098 1 to 111       111/111
(100 %)
2 diff
(98.2 %id)
R40716 whole brain .a 1987 to 2269 299 to 11       289/304
(95 %)
0 diff
(100 %id)
AL582663 B cells from Burkitt lymphoma .a 2065 to 3069 1002 to 1       1002/1002
(100 %)
30 diff
(97.1 %id)
AA937610 metastatic prostate bone lesion .a 2072 to 2249 1 to 178       178/193
(92 %)
10 diff
(94.9 %id)
FN052107 breast carcinoma .a 2118 to 2234 1 to 116       116/116
(100 %)
1 diff
(99.2 %id)
TI_149285806   .a 2455 to 3118 770 to 108       663/771
(85 %)
0 diff
(100 %id)
BM971680 lung .a 2476 to 3109 652 to 19   AAA   634/634
(100 %)
4 diff
(99.4 %id)
AU153516   .a 2534 to 3109 581 to 1       581/583
(99 %)
14 diff
(97.6 %id)
BF196936 pooled .a 2572 to 3110 544 to 6       539/544
(99 %)
0 diff
(100 %id)
AI740822 pooled .a 2612 to 3110 504 to 6       499/504
(99 %)
0 diff
(100 %id)
AA227857 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2673 to 3109 450 to 13   AAA   438/438
(100 %)
3 diff
(99.4 %id)
AA243738 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2674 to 3109 448 to 13   AAA   436/436
(100 %)
2 diff
(99.6 %id)
AI864193 pooled .a 2700 to 3109 442 to 30   AAA   413/413
(100 %)
3 diff
(99.3 %id)
AI580293 Kidney .a 2848 to 3104 257 to 1       257/257
(100 %)
0 diff
(100 %id)
AA782700 parathyroid gland, parathyroid tumor .a 2886 to 3110 230 to 6       225/230
(97 %)
0 diff
(100 %id)
AI612918 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2908 to 3112 207 to 1   tiling clone,   207/207
(100 %)
2 diff
(99.1 %id)
BC031070 Brain, hypothalamus .b 1 to 2212 2 to 2213 P421R tiling clone, available from MGC, AAA   2213/2213
(100 %)
1 diff
(100.0 %id)
BP210032 cerebellum .c 1 to 583 2 to 583 exact tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DA630424 Kidney .c 5 to 592 2 to 589 exact capped   588/588
(100 %)
2 diff
(99.7 %id)
BF797831 lymph, lymphoma, cell line .c 27 to 771 1 to 742   tiling clone,   742/860
(86 %)
13 diff
(98.5 %id)
AA648517 germinal center B cell .c 733 to 1078 352 to 3   tiling clone,   350/352
(99 %)
0 diff
(100 %id)
BP209453 cerebellum .d 1 to 583 2 to 583 exact     583/583
(100 %)
1 diff
(99.9 %id)
BP209548 cerebellum .d 1 to 580 2 to 582 W71L E72G L73I Y74V Q75P ... tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BM546733 ovary (pool of 3) .d 26 to 1063 1 to 1043   tiling clone,   1043/1043
(100 %)
17 diff
(98.4 %id)
BX112953 parathyroid gland, parathyroid tumor .e 1 to 755 1 to 757 exact tiling clone,   757/757
(100 %)
2 diff
(99.8 %id)
W37392 parathyroid gland, parathyroid tumor .e 1 to 433 1 to 439       439/440
(99 %)
11 diff
(97.5 %id)
W37280 parathyroid gland, parathyroid tumor .e 1 to 563 1 to 565 L111P E114G D115R L116P E117W ... fully sequenced,   565/565
(100 %)
4 diff
(99.3 %id)
W37793 parathyroid gland, parathyroid tumor .e 502 to 833 336 to 1   tiling clone, fully sequenced,   336/336
(100 %)
2 diff
(99.5 %id)
W37498 parathyroid gland, parathyroid tumor .e 584 to 833 251 to 1       251/251
(100 %)
1 diff
(99.7 %id)
BU633786 cell lines, Chondrosarcoma .f 1 to 652 670 to 19 exact tiling clone, AAA   652/652
(100 %)
0 diff
(100 %id)
BP241145 Liver .g 1 to 566 2 to 567 exact tiling clone,   567/567
(100 %)
2 diff
(99.7 %id)
BP213507 cerebrum .h 1 to 564 1 to 563 exact tiling clone,   563/563
(100 %)
1 diff
(99.9 %id)
BP369593 testis .i 1 to 544 1 to 544 exact tiling clone, AAA   544/544
(100 %)
0 diff
(100 %id)
DW435479 Liver .j 1 to 193 13 to 204 R2G tiling clone, AAA   192/204
(94 %)
7 diff
(96.6 %id)
DB300944 cerebellum Gene RPAP2, variant not shown              
DA128212 cerebellum Gene RPAP2, variant not shown       capped      
BX448623 fetal liver, Liver Gene RPAP2, variant not shown         This clone was ignored    
BX448624 fetal liver, Liver Gene RPAP2, variant not shown         This clone was ignored    
AA554335 colon Gene RPAP2, variant not shown         Suspected internal deletion, this clone was ignored    
AI918683 pooled germ cell tumors Gene RPAP2, variant not shown              
BE466405 pooled germ cell tumors Gene RPAP2, variant not shown              
DB320938 Kidney Gene RPAP2, variant not shown         This clone was ignored    
DA633548 Kidney Gene RPAP2, variant not shown       capped This clone was ignored    
DB322529 ovary Gene RPAP2, variant not shown         This clone was ignored    
DA680940 ovary Gene RPAP2, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI