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Gene WDR54TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
246 supporting clones for gene WDR54 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG024606 lymph, lymphoma, cell line .a 1 to 731 1 to 735   tiling clone,   735/759
(96 %)
10 diff
(98.7 %id)
BI561665 testis .a 3 to 736 1 to 747       747/859
(86 %)
22 diff
(97.5 %id)
AK023015   .a 8 to 1153 1 to 1146 exact tiling clone, available from FLJ,   1146/1146
(100 %)
0 diff
(100 %id)
AK222696 brain .a 8 to 1153 1 to 1146 N243D tiling clone, AAA   1146/1146
(100 %)
1 diff
(100.0 %id)
BP212648 cerebrum .a 8 to 583 1 to 576       576/576
(100 %)
0 diff
(100 %id)
CD697864 normal nasopharynx .a 8 to 603 31 to 626       596/626
(95 %)
6 diff
(99.1 %id)
TI_44350630   .a 8 to 736 132 to 873       742/985
(75 %)
24 diff
(97.6 %id)
CB108558 Liver .a 8 to 304 1 to 297       297/297
(100 %)
0 diff
(100 %id)
CB124647 Liver .a 8 to 421 1 to 414       414/414
(100 %)
5 diff
(98.8 %id)
CB126429 Liver .a 8 to 419 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
CB126624 Liver .a 8 to 464 1 to 457       457/457
(100 %)
2 diff
(99.6 %id)
CB127060 Liver .a 8 to 565 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
CB141166 Liver .a 8 to 664 1 to 657       657/657
(100 %)
0 diff
(100 %id)
CB149020 Liver .a 8 to 535 1 to 528       528/528
(100 %)
0 diff
(100 %id)
CB149048 Liver .a 8 to 527 1 to 521       521/521
(100 %)
6 diff
(98.9 %id)
BP308179 brain .a 8 to 595 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
BP309208 brain .a 8 to 588 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP329968 rectum .a 8 to 589 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BM830584 Ascites, stomach .a 8 to 582 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
BM787304 stomach .a 8 to 615 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BM834464 stomach .a 8 to 563 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
BP348378 brain .a 8 to 587 1 to 582       580/582
(99 %)
3 diff
(99.5 %id)
BP373637 umbilical cord .a 8 to 589 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP375726 uterus .a 8 to 565 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
DA618126   .a 9 to 328 2 to 321   capped   320/320
(100 %)
0 diff
(100 %id)
AU127513   .a 9 to 599 2 to 593   capped   592/592
(100 %)
4 diff
(99.4 %id)
AU129413   .a 9 to 636 2 to 631   capped   630/739
(85 %)
9 diff
(98.8 %id)
CD633586   .a 10 to 685 1 to 676       676/676
(100 %)
8 diff
(98.9 %id)
BF316560 brain, neuroblastoma .a 15 to 793 1 to 767       767/768
(99 %)
20 diff
(97.4 %id)
BG331981 large cell carcinoma, lung .a 15 to 892 1 to 878       878/920
(95 %)
32 diff
(96.6 %id)
CB142397 Liver .a 16 to 430 1 to 415       415/415
(100 %)
0 diff
(100 %id)
CD699112 normal nasopharynx .a 18 to 375 13 to 369       357/369
(96 %)
6 diff
(98.4 %id)
BI459373 testis .a 18 to 871 1 to 864       864/867
(99 %)
30 diff
(96.6 %id)
BP307308 brain .a 18 to 598 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BF689728 melanotic melanoma, high MDR (cell line), skin .a 19 to 478 1 to 461   fully sequenced,   461/461
(100 %)
3 diff
(99.4 %id)
BM508998 insulinoma, Pancreas .a 20 to 559 8 to 547       540/548
(98 %)
7 diff
(98.8 %id)
BM549318 astrocytoma grade IV, cell line, brain .a 20 to 679 1 to 665       665/1225
(54 %)
12 diff
(99.1 %id)
BQ268166 insulinoma, Pancreas .a 20 to 440 8 to 428       421/428
(98 %)
6 diff
(98.6 %id)
CK906011 insulinoma, Pancreas .a 20 to 550 8 to 548       541/548
(98 %)
22 diff
(96.0 %id)
BM048814 carcinoma, cell line, Prostate .a 21 to 958 1 to 941       941/956
(98 %)
24 diff
(97.5 %id)
BM047664 carcinoma, cell line, Prostate .a 21 to 902 1 to 884       882/905
(97 %)
36 diff
(96.1 %id)
CD687290 normal nasopharynx .a 23 to 576 35 to 588       554/588
(94 %)
6 diff
(99.0 %id)
DB469473 hippocampus .a 23 to 451 1 to 429       429/431
(99 %)
4 diff
(99.1 %id)
BI462059 testis .a 23 to 893 1 to 872       872/920
(94 %)
38 diff
(95.9 %id)
BQ438893 embryonal carcinoma, cell line, testis .a 23 to 902 1 to 884       884/930
(95 %)
19 diff
(98.0 %id)
CD689395 normal nasopharynx .a 24 to 395 1 to 383       383/383
(100 %)
15 diff
(96.1 %id)
DB442005 testis .a 26 to 456 1 to 429       429/429
(100 %)
2 diff
(99.6 %id)
CD698099 normal nasopharynx .a 28 to 124 5 to 104       98/104
(94 %)
12 diff
(88.5 %id)
CD700272 normal nasopharynx .a 28 to 570 24 to 565       542/565
(95 %)
6 diff
(99.0 %id)
CD705174 normal nasopharynx .a 28 to 667 9 to 647       639/647
(98 %)
8 diff
(98.8 %id)
CD696142 normal nasopharynx .a 29 to 447 34 to 457       424/457
(92 %)
11 diff
(97.6 %id)
AA442815   .a 31 to 483 1 to 452       452/452
(100 %)
2 diff
(99.6 %id)
T08067   .a 33 to 484 1 to 455       455/455
(100 %)
13 diff
(97.2 %id)
CD696987 normal nasopharynx .a 34 to 652 32 to 650       619/650
(95 %)
6 diff
(99.1 %id)
CN262243 embryonic stem cells, DMSO-treated H9 cellline .a 34 to 587 1 to 554       554/554
(100 %)
3 diff
(99.5 %id)
CN262244 embryonic stem cells, cell lines H1, H7, andH9 .a 34 to 610 23 to 599       577/599
(96 %)
6 diff
(99.0 %id)
BE410349 choriocarcinoma, placenta .a 34 to 730 1 to 700       700/818
(85 %)
12 diff
(98.6 %id)
BE744990 adenocarcinoma cell line, ovary .a 34 to 790 1 to 745       745/870
(85 %)
20 diff
(97.8 %id)
BI091915 cervix .a 34 to 768 11 to 748       738/751
(98 %)
15 diff
(98.1 %id)
BC051848 Skin, melanotic melanoma. .a 36 to 1153 1 to 1118 exact available from MGC, AAA   1118/1118
(100 %)
0 diff
(100 %id)
NM_032118.2   .a 36 to 1153 1 to 1118 exact RefSeq, AAA   1118/1118
(100 %)
0 diff
(100 %id)
EL953945 eyeball .a 37 to 550 17 to 530       514/530
(96 %)
9 diff
(98.4 %id)
CD675043 eye, lens .a 37 to 568 1 to 532       532/532
(100 %)
1 diff
(99.9 %id)
BG030079 breast, mammary adenocarcinoma, cell line .a 37 to 730 1 to 694       694/1152
(60 %)
5 diff
(99.6 %id)
BG324203 Kidney, renal cell adenocarcinoma .a 37 to 505 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
BG325569 Kidney, renal cell adenocarcinoma .a 37 to 851 1 to 811       811/814
(99 %)
16 diff
(98.1 %id)
BG699960 brain, hippocampus .a 37 to 699 1 to 663       663/663
(100 %)
1 diff
(99.9 %id)
BU160647 melanotic melanoma, skin .a 37 to 686 1 to 658       658/947
(69 %)
9 diff
(99.1 %id)
CN262240 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 38 to 360 12 to 334       323/334
(96 %)
6 diff
(98.3 %id)
BE742504 adenocarcinoma cell line, ovary .a 38 to 812 1 to 790       790/880
(89 %)
36 diff
(96.0 %id)
BE747012 adenocarcinoma cell line, ovary .a 38 to 845 1 to 803       803/946
(84 %)
21 diff
(97.8 %id)
BG035837 adenocarcinoma, cell line, Liver .a 38 to 822 1 to 784       785/904
(86 %)
22 diff
(97.6 %id)
CD689140 normal nasopharynx .a 39 to 620 18 to 599       582/599
(97 %)
6 diff
(99.0 %id)
CD671764 eye, Iris .a 39 to 664 1 to 626       626/626
(100 %)
0 diff
(100 %id)
CB139800 Liver .a 39 to 421 1 to 383       383/383
(100 %)
1 diff
(99.8 %id)
CN262242 embryonic stem cells, DMSO-treated H9 cellline .a 40 to 726 1 to 687       687/687
(100 %)
0 diff
(100 %id)
BM555176 amelanotic melanoma, cell line, skin .a 40 to 630 33 to 626       594/1436
(41 %)
13 diff
(99.1 %id)
BU158340 large cell carcinoma, lung .a 40 to 730 1 to 697       697/977
(71 %)
14 diff
(98.6 %id)
CA489763   .a 40 to 900 1 to 862       862/900
(95 %)
11 diff
(98.8 %id)
DN998167 breast cancer, Mammary gland (cancer tissue) .a 40 to 777 8 to 745       738/745
(99 %)
5 diff
(99.4 %id)
BG258252 embryonal carcinoma, cell line, testis .a 41 to 736 1 to 696       696/1196
(58 %)
8 diff
(99.4 %id)
CX752331 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 41 to 750 1 to 710       710/710
(100 %)
0 diff
(100 %id)
BC014622 Muscle, rhabdomyosarcoma .a 42 to 1153 1045 to 2156 exact AAA   1112/2156
(51 %)
8 diff
(99.7 %id)
AW404090 lymph .a 43 to 473 1 to 431       431/431
(100 %)
5 diff
(98.9 %id)
BU184366 eye, retinoblastoma .a 43 to 869 1 to 838       838/920
(91 %)
12 diff
(98.7 %id)
BG248343 adenocarcinoma cell line, colon .a 46 to 863 1 to 818       818/1045
(78 %)
23 diff
(97.8 %id)
DB484135 hypothalamus .a 47 to 487 1 to 443       443/443
(100 %)
6 diff
(98.7 %id)
BE621181 epithelioid carcinoma, Pancreas .a 47 to 826 1 to 790       788/1149
(68 %)
29 diff
(97.5 %id)
BM560780 astrocytoma grade IV, cell line, brain .a 47 to 889 1 to 848       848/1052
(80 %)
11 diff
(99.0 %id)
CR620405 T cells (Jurkat cell line) .a 48 to 1120 1 to 1073 exact     1073/1073
(100 %)
0 diff
(100 %id)
AL557319 T cells (Jurkat cell line), T cells from T cell leukemia .a 48 to 660 1 to 613   fully sequenced,   613/613
(100 %)
0 diff
(100 %id)
BM559780 brain, medulla .a 48 to 969 15 to 941       927/1047
(88 %)
24 diff
(97.8 %id)
TI_154140956   .a 49 to 599 79 to 637       559/563
(99 %)
19 diff
(96.7 %id)
BM713272 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 49 to 657 1 to 609   fully sequenced,   609/609
(100 %)
0 diff
(100 %id)
Z42081 brain, total brain .a 51 to 269 1 to 219       219/219
(100 %)
0 diff
(100 %id)
AW407185 lymph .a 51 to 316 1 to 265       265/265
(100 %)
6 diff
(97.8 %id)
CD707610 normal nasopharynx .a 53 to 608 23 to 579       557/579
(96 %)
8 diff
(98.7 %id)
BG326183 Kidney, renal cell adenocarcinoma .a 53 to 730 1 to 680       680/872
(77 %)
11 diff
(98.8 %id)
BU176214 eye, retinoblastoma .a 56 to 902 1 to 853       853/873
(97 %)
15 diff
(98.3 %id)
N56151   .a 56 to 312 1 to 252       252/252
(100 %)
8 diff
(96.9 %id)
BE271515 adenocarcinoma cell line, ovary .a 57 to 642 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BM020784 astrocytoma grade IV, cell line, brain .a 57 to 823 1 to 770       770/770
(100 %)
14 diff
(98.2 %id)
T31972 uterus .a 57 to 419 1 to 362       362/362
(100 %)
9 diff
(97.6 %id)
AW952606   .a 58 to 409 1 to 352       352/353
(99 %)
1 diff
(99.8 %id)
T78227 whole brain .a 58 to 502 1 to 450       452/466
(96 %)
19 diff
(96.0 %id)
TI_59387860   .a 58 to 823 114 to 882       769/769
(100 %)
13 diff
(98.4 %id)
TI_154148283   .a 58 to 502 89 to 532       444/548
(81 %)
5 diff
(99.1 %id)
BM908639 astrocytoma grade IV, cell line, brain .a 60 to 630 1 to 577       577/936
(61 %)
15 diff
(98.4 %id)
EL734732 mixed .a 96 to 749 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
TI_1948212023   .a 96 to 660 144 to 708   fully sequenced,   565/708
(79 %)
6 diff
(99.2 %id)
TI_1948212164   .a 96 to 696 137 to 737   fully sequenced,   601/737
(81 %)
15 diff
(98.0 %id)
TI_1948212306   .a 96 to 730 137 to 772       636/1347
(47 %)
10 diff
(99.3 %id)
TI_1948212443   .a 96 to 692 141 to 737   fully sequenced,   597/737
(81 %)
6 diff
(99.2 %id)
BG818761 anaplastic oligodendroglioma with 1p/19qloss, brain .a 152 to 992 1 to 842       842/842
(100 %)
4 diff
(99.6 %id)
BE314795 brain, neuroblastoma .a 169 to 891 30 to 742       713/759
(93 %)
22 diff
(97.2 %id)
TI_149315313   .a 327 to 1153 930 to 108   AAA   823/974
(84 %)
13 diff
(98.7 %id)
TI_149310521   .a 378 to 1153 875 to 110   AAA   766/943
(81 %)
15 diff
(98.5 %id)
CD633587   .a 392 to 1076 694 to 11       684/694
(98 %)
4 diff
(99.5 %id)
BE387681 endometrium, adenocarcinoma cell line, uterus .a 403 to 1093 1 to 685       685/685
(100 %)
10 diff
(98.6 %id)
BF690273 melanotic melanoma, high MDR (cell line), skin .a 417 to 1108 708 to 16   fully sequenced,   693/708
(97 %)
3 diff
(99.6 %id)
TI_154062616   .a 459 to 1153 829 to 142   AAA   688/895
(76 %)
33 diff
(96.4 %id)
BU743024 eye, fetal eye .a 487 to 1153 684 to 19   AAA   666/666
(100 %)
1 diff
(99.9 %id)
BQ015146 Chondrosarcoma, Left Pubic Bone .a 501 to 1153 670 to 19   AAA   652/658
(99 %)
1 diff
(99.9 %id)
TI_149295864   .a 501 to 1153 734 to 91   AAA   644/897
(71 %)
14 diff
(98.5 %id)
BU688811 lung .a 501 to 1153 670 to 19   AAA   652/660
(98 %)
5 diff
(99.3 %id)
TI_151727811   .a 501 to 1153 747 to 99   AAA   649/706
(91 %)
19 diff
(97.4 %id)
BQ045214 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 502 to 1153 670 to 19   AAA   652/652
(100 %)
6 diff
(99.1 %id)
BU683950 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 514 to 1153 651 to 19   AAA   633/637
(99 %)
8 diff
(98.8 %id)
AW409922 muscle, rhabdomyosarcoma .a 517 to 1153 664 to 28   AAA   637/637
(100 %)
1 diff
(99.9 %id)
TI_149288123   .a 551 to 1153 686 to 84   AAA   603/974
(61 %)
4 diff
(99.6 %id)
BM970194 lung .a 551 to 1153 621 to 19   AAA   603/604
(99 %)
4 diff
(99.4 %id)
BG222368 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 564 to 1153 614 to 26   AAA   589/631
(93 %)
18 diff
(97.2 %id)
BE621854 epithelioid carcinoma, Pancreas .a 580 to 1116 571 to 47       525/643
(81 %)
19 diff
(97.1 %id)
AA083573   .a 582 to 1083 1 to 512       510/512
(99 %)
13 diff
(97.5 %id)
AL579383 T cells (Jurkat cell line), T cells from T cell leukemia .a 599 to 1120 522 to 1   fully sequenced,   522/522
(100 %)
7 diff
(98.7 %id)
TI_1948212024   .a 599 to 1099 625 to 125   fully sequenced,   501/625
(80 %)
0 diff
(100 %id)
BM676389 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 599 to 1153 573 to 19   fully sequenced, AAA   555/555
(100 %)
0 diff
(100 %id)
TI_1948212444   .a 662 to 1099 562 to 125   fully sequenced,   438/562
(77 %)
0 diff
(100 %id)
TI_1948212165   .a 666 to 1099 556 to 123   fully sequenced,   434/556
(78 %)
0 diff
(100 %id)
AU151535   .a 698 to 1153 456 to 1       456/456
(100 %)
0 diff
(100 %id)
TI_1948212307   .a 730 to 1099 493 to 124       370/1383
(26 %)
3 diff
(99.8 %id)
DB364395   .a 827 to 1153 360 to 29   AAA   332/332
(100 %)
13 diff
(96.1 %id)
AA583648 Kidney, kidney tumor .a 996 to 1123 128 to 1       128/128
(100 %)
0 diff
(100 %id)
CD676371 eye, lens .b 1 to 617 4 to 620   tiling clone,   620/620
(100 %)
0 diff
(100 %id)
BM010195 amelanotic melanoma, cell line, skin .b 10 to 780 1 to 773       773/773
(100 %)
8 diff
(99.0 %id)
BM550297 amelanotic melanoma, cell line, skin .b 11 to 977 1 to 967   tiling clone,   967/1048
(92 %)
9 diff
(99.2 %id)
TI_59384998   .b 11 to 780 88 to 859       772/772
(100 %)
7 diff
(99.1 %id)
CN262239 embryonic stem cells, cell lines H1, H7, andH9 .b 12 to 619 12 to 620       609/620
(98 %)
7 diff
(98.9 %id)
BP318886 pericardium .c 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
CN262241 embryonic stem cells, DMSO-treated H9 cellline .c 45 to 821 1 to 778   tiling clone,   778/778
(100 %)
5 diff
(99.4 %id)
AI142394   .c 691 to 1083 11 to 403   tiling clone,   393/403
(97 %)
6 diff
(98.6 %id)
DB443474 testis .d 1 to 449 1 to 449       449/454
(98 %)
6 diff
(98.7 %id)
BP309067 brain .d 1 to 592 1 to 592   tiling clone,   592/592
(100 %)
4 diff
(99.4 %id)
TI_57186186   .d 30 to 933 52 to 961   tiling clone,   910/972
(93 %)
25 diff
(97.5 %id)
BI855898 breast, mammary adenocarcinoma, cell line .d 31 to 933 1 to 909   tiling clone,   909/971
(93 %)
25 diff
(97.5 %id)
BU170430 eye, retinoblastoma .e 1 to 804 5 to 815   tiling clone,   811/888
(91 %)
16 diff
(98.2 %id)
BM924968 pooled lung and spleen .e 2 to 935 5 to 945       941/1060
(88 %)
22 diff
(98.0 %id)
TI_151786425   .e 175 to 781 108 to 716       609/620
(98 %)
13 diff
(98.0 %id)
BU162589 epithelioid carcinoma, Pancreas .e 419 to 1274 1 to 861   tiling clone,   861/868
(99 %)
16 diff
(98.2 %id)
DB506895 testis .e 859 to 1332 1 to 474   tiling clone, Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
BG180843 adenocarcinoma, cell line, Prostate .f 1 to 740 1 to 734 A9S D10R L11S L13A Q14A ... tiling clone,   736/978
(75 %)
19 diff
(98.1 %id)
CD249537 embryonic stem cells, WA01, passage 38 .g 1 to 853 24 to 878 R89W tiling clone,   861/886
(97 %)
13 diff
(98.6 %id)
BE909811 epithelioid carcinoma, Pancreas .g 31 to 596 1 to 567   tiling clone,   567/611
(92 %)
2 diff
(99.7 %id)
BU162565 epithelioid carcinoma, Pancreas .g 32 to 672 1 to 646       646/750
(86 %)
9 diff
(98.8 %id)
AA157691   .g 129 to 241 1 to 114       114/114
(100 %)
3 diff
(97.4 %id)
FN104268 breast carcinoma .g 390 to 477 1 to 86       86/86
(100 %)
2 diff
(97.7 %id)
DA063646 cerebellum .h 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
2 diff
(99.7 %id)
DA067501 cerebellum .h 535 to 1112 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BI463959 testis .i 1 to 857 1 to 860 M70I P71A I72N T73H D74R ... tiling clone,   860/904
(95 %)
31 diff
(96.6 %id)
BI458885 testis .j 1 to 869 9 to 894 D95E A97G S98F E99* tiling clone,   882/901
(97 %)
43 diff
(95.3 %id)
BG036993 brain, hypothalamus .k 1 to 563 6 to 566   fully sequenced,   566/566
(100 %)
6 diff
(99.0 %id)
DB155532 thymus .k 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
DA061417 cerebellum .k 2 to 563 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA067650 cerebellum .k 2 to 573 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA082340 cerebellum .k 2 to 568 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA153371 amygdala .k 2 to 565 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA178226 amygdala .k 2 to 563 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA251047 caudate nucleus .k 2 to 574 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA372353 thalamus .k 2 to 563 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA378663 thalamus .k 2 to 558 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA488431 brain .k 2 to 568 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA520930 brain .k 2 to 568 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA584699 lung .k 2 to 598 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA589521 lung .k 2 to 464 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA823919 pericardium .k 2 to 568 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA878071 Prostate .k 2 to 457 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA925167 small intestine .k 2 to 573 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA938249 Spleen .k 2 to 594 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA950210 Spleen .k 2 to 569 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA955329 Spleen .k 2 to 571 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB016994 esophageal, tumor tissue .k 2 to 568 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB101094 thymus .k 2 to 547 2 to 547   capped   546/548
(99 %)
1 diff
(99.9 %id)
DB110551 thymus .k 2 to 573 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB118265 thymus .k 2 to 564 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DB118544 thymus .k 2 to 571 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB123585 thymus .k 2 to 612 2 to 612   capped   611/611
(100 %)
1 diff
(99.9 %id)
DB141460 thymus .k 2 to 550 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB256103 uterus .k 2 to 573 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB259085 uterus .k 2 to 570 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB287957 uterus .k 2 to 573 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA796861 brain .k 10 to 554 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
TI_57242166   .k 14 to 634 32 to 653       622/653
(95 %)
6 diff
(99.1 %id)
DB065151 testis .k 20 to 547 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DB104438 thymus .k 20 to 566 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA517600 brain .k 22 to 498 2 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
DA506106 brain .k 23 to 583 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB452478.
matches multiple genes
testis .k 23 to 502 1 to 480     Submitted on the opposite strand, also hits gene CIB1 480/480
(100 %)
0 diff
(100 %id)
DA771145 brain .k 23 to 572 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DB228022 trachea .k 23 to 600 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
Z43439 brain, total brain .k 28 to 267 11 to 250       240/250
(96 %)
8 diff
(96.8 %id)
BC051753 Brain, fetal, whole pooled .k 37 to 2391 1 to 2356 exact tiling clone, available from MGC, AAA   2356/2356
(100 %)
2 diff
(100.0 %id)
BF967860 brain, hypothalamus .k 533 to 1002 481 to 12   fully sequenced,   470/481
(97 %)
6 diff
(98.8 %id)
BI054410 placenta_normal .k 1496 to 1632 157 to 21       137/157
(87 %)
0 diff
(100 %id)
DB342286 thymus .k 1869 to 2391 524 to 1       524/524
(100 %)
1 diff
(99.9 %id)
CD693202 normal nasopharynx .l 1 to 496 21 to 516 exact tiling clone,   496/516
(96 %)
6 diff
(98.9 %id)
BF922693 nervous_tumor .m 1 to 358 10 to 368   tiling clone,   359/368
(97 %)
6 diff
(98.4 %id)
CN262236 embryonic stem cells, DMSO-treated H9 cellline .m 256 to 790 1 to 535 exact     535/535
(100 %)
3 diff
(99.5 %id)
TI_151752953   .m 265 to 791 614 to 80 V2D T3G A4Q D5M D6T ...     533/1074
(49 %)
38 diff
(96.5 %id)
BU943711 mixed (pool of 40 RNAs) .m 270 to 791 1 to 523 L21S     523/796
(65 %)
5 diff
(99.4 %id)
AW150215 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .m 278 to 793 517 to 1 Y106L I107H E108* tiling clone,   517/517
(100 %)
1 diff
(99.9 %id)
CN262237 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .m 288 to 791 1 to 504   AAA   504/504
(100 %)
4 diff
(99.3 %id)
AI829709 pooled .m 294 to 792 501 to 3   tiling clone,   499/501
(99 %)
0 diff
(100 %id)
AI268295 carcinoid, lung .m 311 to 790 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
AI379827 pooled .m 321 to 792 474 to 3       472/474
(99 %)
0 diff
(100 %id)
DB545822 hippocampus .m 348 to 787 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
AI203710   .m 348 to 791 461 to 17   AAA   445/445
(100 %)
4 diff
(99.2 %id)
DB555019 hypothalamus .m 351 to 791 1 to 441     Submitted on the opposite strand 441/441
(100 %)
14 diff
(96.9 %id)
DB537044 hippocampus .m 357 to 791 1 to 435     Submitted on the opposite strand 435/435
(100 %)
2 diff
(99.6 %id)
AW088503 ovary, tumor, 5 pooled (see description) .m 368 to 791 423 to 1       423/432
(97 %)
2 diff
(99.6 %id)
BE858149 brain, glioblastoma (pooled) .m 368 to 791 424 to 1       424/488
(86 %)
10 diff
(98.0 %id)
AI246732 adenocarcinoma, colon .m 369 to 792 425 to 2       424/425
(99 %)
0 diff
(100 %id)
DB508412 testis .m 371 to 791 1 to 425     Submitted on the opposite strand 425/425
(100 %)
4 diff
(99.1 %id)
AI076760   .m 412 to 791 395 to 16   AAA   380/380
(100 %)
2 diff
(99.5 %id)
AI628869 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .m 413 to 791 422 to 43   AAA   380/380
(100 %)
16 diff
(95.8 %id)
AA626189 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .m 416 to 792 381 to 5       377/381
(98 %)
0 diff
(100 %id)
AA610734 lung, lung tumor .m 425 to 792 368 to 1       368/368
(100 %)
0 diff
(100 %id)
BG122489 adenocarcinoma, cell line, Liver .m 429 to 791 1 to 362   AAA   362/362
(100 %)
2 diff
(99.5 %id)
Z39519 brain, total brain .m 435 to 725 303 to 13       291/303
(96 %)
0 diff
(100 %id)
AA730146 pooled germ cell tumors .m 435 to 792 360 to 3       358/360
(99 %)
0 diff
(100 %id)
AI250915 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .m 482 to 792 313 to 3       311/313
(99 %)
1 diff
(99.7 %id)
BC032428 Brain, fetal, whole pooled .n 1 to 1861 1 to 1863 exact tiling clone, available from MGC, AAA   1863/1863
(100 %)
2 diff
(99.9 %id)
BI917260 brain .n 1 to 620 1 to 621   available from MGC,   621/621
(100 %)
1 diff
(99.9 %id)
TI_57196078   .n 14 to 681 21 to 693       673/830
(81 %)
6 diff
(99.3 %id)
BM928271 brain .n 16 to 922 17 to 926   available from MGC,   910/1047
(86 %)
28 diff
(97.4 %id)
BI818269 pooled brain, lung, testis .n 34 to 681 1 to 654       654/791
(82 %)
11 diff
(98.7 %id)
CK004207 brain/CNS, Human Brain - Cerebellar Cortex .n 62 to 726 1 to 660       660/663
(99 %)
17 diff
(97.5 %id)
EL737136 mixed .n 411 to 751 1 to 341       341/506
(67 %)
2 diff
(99.7 %id)
DB133097 thymus .n 508 to 1042 2 to 535   capped   534/534
(100 %)
3 diff
(99.5 %id)
AI350118 carcinoid, lung .n 627 to 1049 423 to 1       423/423
(100 %)
0 diff
(100 %id)
AI301274 carcinoid, lung .n 683 to 1050 368 to 2   tiling clone,   367/368
(99 %)
0 diff
(100 %id)
DA774806 brain .o 1 to 551 2 to 552 exact tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DA377153 thalamus .p 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
DA774600 brain .q-u 1 to 570 2 to 571 Y88H tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
AK311621 testis Gene WDR54, variant not shown         Suspected internal deletion, this clone was ignored    
CN262238 embryonic stem cells, DMSO-treated H9 cellline Gene WDR54, variant not shown         Suspected internal deletion, this clone was ignored    
BE384233 melanotic melanoma, skin Gene WDR54, variant not shown         Suspected internal deletion, this clone was ignored    
DB082250 testis Gene WDR54, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C