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Gene MAP6D1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
142 supporting clones for gene MAP6D1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI669125 brain, hypothalamus .a 1 to 309 1 to 309   tiling clone,   309/309
(100 %)
4 diff
(98.8 %id)
TI_44346172   .a 4 to 583 88 to 666       579/668
(86 %)
11 diff
(98.4 %id)
NM_024871.2   .a 4 to 2141 1 to 2138 exact RefSeq, AAA   2138/2138
(100 %)
0 diff
(100 %id)
DB466258 hippocampus .a 18 to 441 1 to 429       429/429
(100 %)
34 diff
(92.1 %id)
DB472919 hippocampus .a 24 to 482 1 to 459       459/459
(100 %)
4 diff
(99.2 %id)
TI_44171459   .a 28 to 644 79 to 692       614/692
(88 %)
7 diff
(99.0 %id)
AK022810   .a 32 to 2135 1 to 2104 exact available from FLJ,   2104/2104
(100 %)
1 diff
(100.0 %id)
DB476654 hippocampus .a 32 to 522 1 to 491       491/491
(100 %)
0 diff
(100 %id)
DB489869 hypothalamus .a 32 to 462 1 to 429       429/437
(98 %)
6 diff
(98.7 %id)
DB494856 hypothalamus .a 32 to 514 1 to 483       483/483
(100 %)
2 diff
(99.6 %id)
DB505356 hypothalamus .a 32 to 490 1 to 459       459/459
(100 %)
6 diff
(98.7 %id)
DA288017 corpus callosum .a 33 to 581 2 to 555   capped   554/554
(100 %)
6 diff
(99.0 %id)
BG703035 brain, hippocampus .a 33 to 554 1 to 520       520/520
(100 %)
8 diff
(98.5 %id)
BE798990 lung, small cell carcinoma .a 38 to 795 19 to 772 exact     754/773
(97 %)
14 diff
(98.2 %id)
BI549900 brain, hippocampus .a 38 to 309 1 to 272       272/272
(100 %)
4 diff
(98.6 %id)
BI552283 brain, hippocampus .a 38 to 309 1 to 273       273/273
(100 %)
5 diff
(98.2 %id)
BI551016 brain, hippocampus .a 38 to 309 1 to 279       279/279
(100 %)
11 diff
(96.1 %id)
BC006434 Lung, small cell carcinoma .a 39 to 2090 1 to 2052 exact tiling clone, available from MGC, AAA   2052/2052
(100 %)
0 diff
(100 %id)
DB471687 hippocampus .a 39 to 535 1 to 497       497/497
(100 %)
0 diff
(100 %id)
DB494603 hypothalamus .a 52 to 565 1 to 514       514/514
(100 %)
4 diff
(99.3 %id)
DA275025 corpus callosum .a 54 to 576 2 to 525   capped   524/524
(100 %)
3 diff
(99.5 %id)
DA364018 subthalamic nucleus .a 54 to 348 2 to 296   capped   295/295
(100 %)
1 diff
(99.7 %id)
DA353447 substantia nigra .a 63 to 393 2 to 332   capped   331/331
(100 %)
2 diff
(99.4 %id)
DB114692 thymus .a 68 to 588 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA262231 caudate nucleus .a 76 to 579 2 to 506   capped   505/505
(100 %)
2 diff
(99.7 %id)
DA342063 substantia nigra .a 78 to 617 2 to 543   capped   542/545
(99 %)
3 diff
(99.5 %id)
DB503652 hypothalamus .a 87 to 557 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
BI551346 brain, hippocampus .a 87 to 309 6 to 228       223/228
(97 %)
6 diff
(97.4 %id)
BI553023 brain, hippocampus .a 87 to 309 6 to 228       223/228
(97 %)
6 diff
(97.4 %id)
DA070080 cerebellum .a 89 to 545 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
DA140902 alzheimer cortex .a 89 to 630 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA160241 amygdala .a 89 to 617 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA163628 amygdala .a 89 to 630 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA164792 amygdala .a 89 to 637 2 to 551   capped   548/550
(99 %)
4 diff
(99.3 %id)
DA203573 brain .a 89 to 672 2 to 585   capped   584/585
(99 %)
1 diff
(99.9 %id)
DA254532 caudate nucleus .a 89 to 657 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA259415 caudate nucleus .a 89 to 521 2 to 434   capped   433/433
(100 %)
1 diff
(99.8 %id)
DA259445 caudate nucleus .a 89 to 435 2 to 348   capped   347/347
(100 %)
1 diff
(99.8 %id)
DA265018 caudate nucleus .a 89 to 576 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA269247 caudate nucleus .a 89 to 630 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA280677 corpus callosum .a 89 to 498 2 to 412   capped   411/411
(100 %)
2 diff
(99.6 %id)
DA302192 hippocampus .a 89 to 462 2 to 377   capped   376/381
(98 %)
5 diff
(98.7 %id)
DB173828 kidney, tumor tissue .a 89 to 545 2 to 459   capped   458/458
(100 %)
2 diff
(99.6 %id)
DA262769 caudate nucleus .a 91 to 545 2 to 456   capped   455/456
(99 %)
2 diff
(99.6 %id)
DA061366 cerebellum .a 265 to 825 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
AI498763 anaplastic oligodendroglioma, brain .a 342 to 590 1 to 249     Submitted on the opposite strand 249/249
(100 %)
1 diff
(99.6 %id)
AI598154 anaplastic oligodendroglioma, brain .a 342 to 899 1 to 558     Submitted on the opposite strand 558/558
(100 %)
1 diff
(99.9 %id)
AI624891 pooled germ cell tumors .a 342 to 899 1 to 558     Submitted on the opposite strand 558/558
(100 %)
0 diff
(100 %id)
AI884794 anaplastic oligodendroglioma, brain .a 342 to 885 1 to 544     Submitted on the opposite strand 544/544
(100 %)
0 diff
(100 %id)
N34822 multiple sclerosis lesions .a 343 to 826 1 to 483     Submitted on the opposite strand 483/483
(100 %)
15 diff
(96.9 %id)
AA863151 2 pooled tumors (clear cell type), Kidney .a 345 to 743 1 to 396     Submitted on the opposite strand 396/396
(100 %)
9 diff
(97.8 %id)
AI336362 lung .a 360 to 862 1 to 503     Submitted on the opposite strand 503/503
(100 %)
0 diff
(100 %id)
DA068959 cerebellum .a 365 to 940 2 to 577   capped   576/576
(100 %)
7 diff
(98.8 %id)
T15963   .a 394 to 691 1 to 297     Submitted on the opposite strand 297/297
(100 %)
10 diff
(96.7 %id)
AA325068 brain, cerebellum .a 403 to 703 1 to 301       301/301
(100 %)
6 diff
(98.1 %id)
R74073 placenta .a 403 to 703 1 to 298     Submitted on the opposite strand 298/306
(97 %)
6 diff
(98.1 %id)
DA369475 subthalamic nucleus .a 407 to 968 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AA811720 germinal center B cell .a 413 to 865 1 to 453     Submitted on the opposite strand 453/453
(100 %)
6 diff
(98.7 %id)
DA078184 cerebellum .a 420 to 992 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BG912296 anaplastic oligodendroglioma with 1p/19qloss, brain .a 455 to 1261 1 to 809       809/809
(100 %)
6 diff
(99.3 %id)
BQ881347 dorsal root ganglia .a 482 to 1425 1 to 951       951/951
(100 %)
65 diff
(93.2 %id)
AI879089 brain, frontal lobe .a 498 to 992 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
T31037 brain .a 579 to 854 1 to 276       276/276
(100 %)
0 diff
(100 %id)
AW955164   .a 581 to 1247 1 to 664       664/665
(99 %)
12 diff
(98.2 %id)
F07090 brain, total brain .a 587 to 824 1 to 238       238/238
(100 %)
0 diff
(100 %id)
Z46100 brain, total brain .a 587 to 895 1 to 309       309/309
(100 %)
0 diff
(100 %id)
AV723232 hypothalamus .a 588 to 1272 1 to 682       682/690
(98 %)
17 diff
(97.6 %id)
R21149 whole brain .a 588 to 1055 1 to 471       471/473
(99 %)
19 diff
(96.0 %id)
BF337153 brain, glioblastoma with EGFR amplification .a 816 to 1320 1 to 515       515/1171
(43 %)
21 diff
(98.3 %id)
AA348508 brain, hippocampus .a 893 to 1178 1 to 286       286/286
(100 %)
5 diff
(98.3 %id)
CK001545 brain/CNS, Bulk tissue from Human Spinal cord .a 911 to 1588 1 to 678       678/682
(99 %)
18 diff
(97.4 %id)
AA984118 schizophrenic brain S-11 frontal lobe .a 931 to 1360 1 to 429     Submitted on the opposite strand 429/429
(100 %)
1 diff
(99.8 %id)
W45450 senescent fibroblast .a 1024 to 1469 1 to 451       451/458
(98 %)
13 diff
(97.2 %id)
AA331803 Embryo, 8 weeks .a 1096 to 1448 358 to 2     Submitted on the opposite strand 357/362
(98 %)
0 diff
(100 %id)
EB388789 eye, optic nerve .a 1098 to 1854 1 to 757       757/757
(100 %)
5 diff
(99.4 %id)
CR749140   .a 1172 to 1655 1 to 484       484/484
(100 %)
5 diff
(99.0 %id)
AA329195   .a 1238 to 1456 1 to 219       219/219
(100 %)
0 diff
(100 %id)
CU451141 epidermis .a 1257 to 1434 1 to 178       178/178
(100 %)
4 diff
(97.8 %id)
AA022861 heart .a 1338 to 1683 1 to 348   fully sequenced,   348/348
(100 %)
3 diff
(99.2 %id)
AA322443 brain, cerebellum .a 1376 to 1585 1 to 210       210/210
(100 %)
1 diff
(99.6 %id)
BM698834 eye, fetal eyes .a 1475 to 1849 1 to 375   fully sequenced,   375/375
(100 %)
2 diff
(99.5 %id)
BM793980 Ascites, stomach .a 1514 to 1895 1 to 382       382/382
(100 %)
5 diff
(98.7 %id)
AW135982   .a 1547 to 2090 561 to 18   AAA   544/544
(100 %)
4 diff
(99.3 %id)
BE245418 leukopheresis .a 1563 to 2090 527 to 1       527/527
(100 %)
8 diff
(98.5 %id)
AA935998 Kidney, kidney tumor .a 1601 to 2041 440 to 1       440/440
(100 %)
3 diff
(99.4 %id)
AI401521 anaplastic oligodendroglioma, brain .a 1607 to 2136 537 to 8       530/537
(98 %)
0 diff
(100 %id)
AI565625 anaplastic oligodendroglioma, brain .a 1607 to 2090 484 to 1       484/484
(100 %)
2 diff
(99.6 %id)
R74072 placenta .a 1616 to 2084 479 to 1     Submitted on the opposite strand 479/481
(99 %)
19 diff
(96.1 %id)
DB565654 hypothalamus .a 1621 to 2090 1 to 470     Submitted on the opposite strand 470/470
(100 %)
3 diff
(99.4 %id)
DB541668 hippocampus .a 1625 to 2098 1 to 474     Submitted on the opposite strand 474/474
(100 %)
4 diff
(99.2 %id)
DB574887 hypothalamus .a 1625 to 2090 1 to 466     Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
DB576625 hypothalamus .a 1626 to 2088 1 to 463     Submitted on the opposite strand 463/465
(99 %)
4 diff
(99.2 %id)
AW182456 pooled .a 1626 to 2093 468 to 1       468/468
(100 %)
2 diff
(99.6 %id)
DB565903 hypothalamus .a 1635 to 2088 1 to 454     Submitted on the opposite strand 454/456
(99 %)
3 diff
(99.4 %id)
DB549639 hippocampus .a 1639 to 2082 1 to 444     Submitted on the opposite strand 444/445
(99 %)
2 diff
(99.6 %id)
DB540431 hippocampus .a 1648 to 2133 1 to 486     Submitted on the opposite strand 486/488
(99 %)
3 diff
(99.4 %id)
AA022862 heart .a 1653 to 2079 438 to 1   fully sequenced,   438/438
(100 %)
11 diff
(97.5 %id)
W45598 senescent fibroblast .a 1655 to 2121 476 to 7       470/479
(98 %)
0 diff
(100 %id)
DB557050 hypothalamus .a 1656 to 2090 1 to 438     Submitted on the opposite strand 438/438
(100 %)
24 diff
(94.6 %id)
AI160245 brain, glioblastoma (pooled) .a 1662 to 2127 467 to 2       466/467
(99 %)
0 diff
(100 %id)
AI380151 brain, glioblastoma (pooled) .a 1662 to 2083 422 to 1       422/433
(97 %)
1 diff
(99.8 %id)
AI884647 anaplastic oligodendroglioma, brain .a 1669 to 2136 475 to 8       468/475
(98 %)
0 diff
(100 %id)
BE328789 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 1674 to 2090 439 to 23   AAA   417/417
(100 %)
7 diff
(98.4 %id)
AI096586 brain, glioblastoma (pooled) .a 1685 to 2127 445 to 3       443/445
(99 %)
0 diff
(100 %id)
H05075 whole brain .a 1688 to 2090 414 to 11   AAA   404/404
(100 %)
4 diff
(99.1 %id)
DB561422 hypothalamus .a 1691 to 2090 1 to 399     Submitted on the opposite strand 399/399
(100 %)
18 diff
(95.5 %id)
AI859170 anaplastic oligodendroglioma, brain .a 1696 to 2136 447 to 7       441/447
(98 %)
0 diff
(100 %id)
AI879543 brain, frontal lobe .a 1701 to 2095 399 to 5       395/399
(98 %)
0 diff
(100 %id)
R42649 whole brain .a 1724 to 2090 380 to 11   AAA   370/398
(92 %)
12 diff
(97.0 %id)
T30891 brain .a 1724 to 2073 351 to 1       351/351
(100 %)
1 diff
(99.8 %id)
R44899 whole brain .a 1726 to 2090 381 to 12   AAA   370/432
(85 %)
11 diff
(97.5 %id)
R46743 whole brain .a 1731 to 2090 381 to 19   AAA   363/363
(100 %)
12 diff
(96.7 %id)
DB536584 hippocampus .a 1734 to 2133 1 to 400     Submitted on the opposite strand 400/402
(99 %)
4 diff
(99.1 %id)
AW137935   .a 1752 to 2126 392 to 18   AAA   375/375
(100 %)
4 diff
(99.0 %id)
DB539342 hippocampus .a 1774 to 2121 1 to 346     Submitted on the opposite strand 346/347
(99 %)
11 diff
(96.9 %id)
Z41020 brain, total brain .a 1805 to 2090 286 to 1       286/286
(100 %)
0 diff
(100 %id)
AI151052 brain, glioblastoma (pooled) .a 1808 to 2127 321 to 2       320/321
(99 %)
0 diff
(100 %id)
AI423706 brain, glioblastoma (pooled) .a 1818 to 2126 310 to 1       310/310
(100 %)
2 diff
(99.4 %id)
BM669617 eye, fetal eyes .a 1819 to 2132 332 to 19   fully sequenced, AAA   314/314
(100 %)
1 diff
(99.7 %id)
DB545386 hippocampus .a 1826 to 2090 1 to 265     Submitted on the opposite strand 265/265
(100 %)
0 diff
(100 %id)
AW592208 pooled .a 1902 to 2133 236 to 5       232/236
(98 %)
0 diff
(100 %id)
AA348507 brain, hippocampus .a 1913 to 2090 178 to 1       178/178
(100 %)
0 diff
(100 %id)
DB529171 hippocampus .a 1922 to 2088 1 to 168     Submitted on the opposite strand 168/178
(94 %)
5 diff
(97.2 %id)
AA890498 parathyroid gland, parathyroid tumor .a 2030 to 2141 128 to 17   AAA   112/112
(100 %)
0 diff
(100 %id)
BG703970 brain, hippocampus .b 1 to 817 1 to 815 P85R S104I S105L A106R P107A ... tiling clone,   815/879
(92 %)
36 diff
(96.0 %id)
BG701667 brain, hippocampus .b 14 to 697 1 to 684 T159D H160Q tiling clone,   684/685
(99 %)
10 diff
(98.6 %id)
AU127367   .b 21 to 548 2 to 529   capped   528/528
(100 %)
14 diff
(97.4 %id)
BP212466 cerebrum .b 76 to 644 1 to 569       569/569
(100 %)
8 diff
(98.6 %id)
DA130854 alzheimer cortex .b 77 to 634 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA258552 caudate nucleus .b 94 to 656 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
AU149974   .b 1785 to 2072 287 to 1   tiling clone,   287/287
(100 %)
2 diff
(99.4 %id)
DA258865 caudate nucleus .c 1 to 548 2 to 549 exact tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
DA076244 cerebellum .c 18 to 453 2 to 437   capped   436/436
(100 %)
1 diff
(99.8 %id)
TI_44170087   .d 1 to 787 86 to 874 exact tiling clone,   789/884
(89 %)
23 diff
(97.4 %id)
TI_44170513   .d 1 to 784 144 to 929 exact tiling clone,   786/929
(84 %)
16 diff
(98.3 %id)
BI198530 brain, neuroblastoma .e-u 1 to 526 1 to 532 G95L R96A R97A K99A S100N ... tiling clone,   532/610
(87 %)
8 diff
(98.7 %id)
DA285654 corpus callosum .f 1 to 496 2 to 497 exact tiling clone, capped   496/496
(100 %)
1 diff
(99.8 %id)
DA087549 cerebellum .g 1 to 359 2 to 360 exact tiling clone, capped   359/359
(100 %)
0 diff
(100 %id)
DB298171 cerebellum .g 1262 to 1798 537 to 1   tiling clone,   537/537
(100 %)
3 diff
(99.5 %id)
DA109281 cerebellum .h-u 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
3 diff
(99.5 %id)
DA118228 cerebellum .h-u 77 to 636 2 to 560   tiling clone, capped   559/559
(100 %)
14 diff
(97.5 %id)
DA233341 brain .h-u 321 to 890 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DB298782 cerebellum Gene MAP6D1, variant not shown              
DA097015 cerebellum Gene MAP6D1, variant not shown       capped      
DB299703 cerebellum Gene MAP6D1, variant not shown              
DA108731 cerebellum Gene MAP6D1, variant not shown       capped      
DA187065 amygdala Gene MAP6D1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA322875 hippocampus Gene MAP6D1, variant not shown       capped This clone was ignored    
AA775772 whole brain Gene MAP6D1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AA532860 colon Gene MAP6D1, variant not shown         Submitted on the opposite strand    
BG716739 brain, hypothalamus Gene MAP6D1, variant not shown         Suspected internal deletion, this clone was ignored    
BG716659 brain, hypothalamus Gene MAP6D1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C