To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene TTC21BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
130 supporting clones for gene TTC21B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC055424 testis .a 1 to 4505 1 to 4505 V201M T276A tiling clone, available from MGC, AAA   4505/4859
(92 %)
3 diff
(100.0 %id)
NM_024753.3   .a 1 to 4895 1 to 4895 exact RefSeq, AAA   4895/4895
(100 %)
0 diff
(100 %id)
BP872584 embryonal kidney .a 31 to 613 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BX957134   .a 53 to 780 1 to 728       728/728
(100 %)
2 diff
(99.8 %id)
AK292942 trachea .a 58 to 4099 1 to 4042 D242N V257A T276A E717D Y745H tiling clone,   4042/4042
(100 %)
7 diff
(99.9 %id)
DB230058 trachea .a 59 to 651 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
AK057268 testis .a 63 to 2236 1 to 2174   available from FLJ,   2174/2174
(100 %)
3 diff
(99.9 %id)
DA126187 cerebellum .a 64 to 632 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB020435 testis .a 64 to 612 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DR001430 fetal brain .a 78 to 872 7 to 803       797/803
(99 %)
12 diff
(98.6 %id)
BX485517   .a 81 to 678 1 to 599       599/599
(100 %)
3 diff
(99.5 %id)
BX280579 bladder, transitional cell papilloma, cell line .a 239 to 720 1 to 482       482/482
(100 %)
0 diff
(100 %id)
BG289571 bladder, transitional cell papilloma, cell line .a 240 to 903 1 to 667       667/1000
(66 %)
11 diff
(98.9 %id)
DA798655 brain .a 275 to 830 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA335689 hippocampus .a 334 to 840 2 to 508   capped   507/507
(100 %)
1 diff
(99.9 %id)
BX501291 Liver .a 539 to 1048 1 to 514       514/514
(100 %)
21 diff
(96.0 %id)
AA281414 germinal center B cell .a 650 to 1089 6 to 444       439/444
(98 %)
9 diff
(98.0 %id)
BF373287 prostate_tumor .a 844 to 1268 422 to 1       422/422
(100 %)
5 diff
(98.9 %id)
CN391991 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1108 to 1845 1 to 738       738/738
(100 %)
0 diff
(100 %id)
DA663531   .a 1208 to 1767 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
EH321311   .a 1348 to 1422 1 to 74       74/74
(100 %)
1 diff
(98.7 %id)
AA281379.
matches multiple genes
germinal center B cell .a 1420 to 1850 430 to 1     also hits gene PSMD9andWDR66 430/430
(100 %)
2 diff
(99.6 %id)
AA805453 germinal center B cell .a 1420 to 1859 438 to 2       437/438
(99 %)
3 diff
(99.4 %id)
BQ434846 melanotic melanoma, skin .a 1444 to 2288 1 to 845       845/847
(99 %)
9 diff
(99.0 %id)
BX499712 Liver .a 1495 to 2096 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
DB335808 testis .a 1733 to 2234 504 to 3       502/504
(99 %)
0 diff
(100 %id)
BQ233221 embryonal carcinoma, cell line, testis .a 1831 to 2563 1 to 737       737/914
(80 %)
10 diff
(99.0 %id)
BI856491 breast, mammary adenocarcinoma, cell line .a 1913 to 2649 1 to 740       740/740
(100 %)
6 diff
(99.2 %id)
TI_57188428   .a 1913 to 2649 54 to 793       740/793
(93 %)
10 diff
(98.8 %id)
DR155420 human embryonic stem cells differentiated toan early endodermal cell type .a 1952 to 2784 1 to 833       833/833
(100 %)
4 diff
(99.6 %id)
BQ214820 melanotic melanoma, skin .a 2222 to 3089 55 to 925       871/927
(93 %)
14 diff
(98.5 %id)
BX647903 human cervix .a 2250 to 4886 1 to 2637   available from DKFZ, AAA   2637/2637
(100 %)
2 diff
(100.0 %id)
BX504174   .a 2250 to 2867 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
CN391990 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2283 to 2964 1 to 682       682/682
(100 %)
1 diff
(99.9 %id)
AK096451 tongue .a 2373 to 4448 1 to 2075   available from FLJ,   2075/2075
(100 %)
4 diff
(99.9 %id)
DA766979 tongue .a 2374 to 2925 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
BM929536 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2385 to 2937 1 to 553   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 553/575
(96 %)
6 diff
(99.0 %id)
BX339164 Placenta Cot 25-normalized .a 2511 to 3379 1 to 869       869/871
(99 %)
7 diff
(99.2 %id)
BI028266 marrow .a 2532 to 2890 383 to 23       361/383
(94 %)
9 diff
(97.7 %id)
CR608010 HeLa cells Cot 25-normalized .a 2544 to 4406 1 to 1863       1863/1863
(100 %)
0 diff
(100 %id)
BX363260   .a 2544 to 3396 1 to 853       853/1040
(82 %)
1 diff
(100.0 %id)
BC063579 Adrenal cortex, carcinoma .a 2657 to 4437 1 to 1781   available from MGC, AAA   1781/1781
(100 %)
0 diff
(100 %id)
BF968369 adrenal cortex carcinoma, cell line, adrenal gland .a 2657 to 3390 1 to 743   available from MGC,   743/828
(89 %)
21 diff
(97.5 %id)
CV806834 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2682 to 3414 17 to 747       731/747
(97 %)
8 diff
(99.0 %id)
CD707548 normal nasopharynx .a 2715 to 3104 46 to 435       390/435
(89 %)
6 diff
(98.7 %id)
CN391992 embryonic stem cells, cell lines H1, H7, andH9 .a 2888 to 3335 1 to 448       448/448
(100 %)
2 diff
(99.6 %id)
CF146650 CNCAP(3)T-225 cell line, Prostate .a 3118 to 3780 8 to 670       663/670
(98 %)
5 diff
(99.3 %id)
TI_154179135   .a 3118 to 3985 77 to 937       861/931
(92 %)
13 diff
(98.7 %id)
BM801117 embryonal carcinoma, cell line, testis .a 3234 to 4037 38 to 852   available from MGC,   815/1058
(77 %)
23 diff
(97.9 %id)
BC035767 Testis, embryonal carcinoma .a 3235 to 4895 1 to 1661   tiling clone, available from MGC, AAA   1661/1661
(100 %)
1 diff
(100.0 %id)
DN992025 brain, whole brain .a 3282 to 4008 9 to 734       726/739
(98 %)
8 diff
(99.0 %id)
AW747895 breast_normal .a 3348 to 3809 25 to 483       459/520
(88 %)
21 diff
(96.0 %id)
DR760244 embryonic stem .a 3392 to 4186 1 to 795       795/795
(100 %)
0 diff
(100 %id)
BX363259   .a 3403 to 4406 1004 to 1       1004/1159
(86 %)
6 diff
(99.5 %id)
BF130039 hypernephroma, Kidney .a 3595 to 4257 1 to 654       654/833
(78 %)
18 diff
(97.9 %id)
AI940461 colon .a 3632 to 3732 1 to 101       101/101
(100 %)
3 diff
(97.1 %id)
AA101718 lung, lung carcinoma .a 3725 to 4155 1 to 431       431/431
(100 %)
4 diff
(99.1 %id)
AA034983.
matches multiple genes
uterus .a 3736 to 4032 1 to 298     also hits gene CDK19 296/298
(99 %)
2 diff
(99.4 %id)
BU785711 Pancreas, Purified pancreatic islet .a 3736 to 4366 1 to 631       631/631
(100 %)
2 diff
(99.7 %id)
CA866250 Pancreas, Purified pancreatic islet .a 3736 to 4352 1 to 617       617/617
(100 %)
2 diff
(99.7 %id)
CB241232 Human Lung Epithelial cells, lung .a 3739 to 4437 717 to 19   AAA   699/699
(100 %)
2 diff
(99.8 %id)
AI478977 B-cell, chronic lymphotic leukemia .a 3752 to 4450 722 to 23   AAA   700/700
(100 %)
7 diff
(99.0 %id)
CF593345 Human Placenta, placenta .a 3822 to 4505 28 to 711       684/886
(77 %)
9 diff
(99.0 %id)
AI376869   .a 3827 to 4434 612 to 5       608/612
(99 %)
0 diff
(100 %id)
FN171446 breast carcinoma .a 3836 to 3922 88 to 1     Submitted on the opposite strand 88/88
(100 %)
1 diff
(98.9 %id)
CD251890 testis .a 3856 to 4669 1 to 815       815/815
(100 %)
2 diff
(99.8 %id)
AJ710821 heart .a 3871 to 4398 546 to 19     Submitted on the opposite strand 528/546
(96 %)
0 diff
(100 %id)
AJ710824 heart .a 3871 to 4398 546 to 20     Submitted on the opposite strand 527/546
(96 %)
0 diff
(100 %id)
DB325499 tongue .a 3888 to 4448 561 to 1       561/561
(100 %)
0 diff
(100 %id)
TI_154051988   .a 3959 to 4892 998 to 75   AAA   924/986
(93 %)
18 diff
(98.2 %id)
AV754061 pituitary tumor .a 3980 to 4350 1 to 367       367/370
(99 %)
3 diff
(99.2 %id)
AA034916.
matches multiple genes
uterus .a 4022 to 4449 438 to 1     also hits gene IL1R1 438/462
(94 %)
13 diff
(97.2 %id)
AI091098 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4030 to 4450 421 to 1       421/421
(100 %)
0 diff
(100 %id)
FN149707 breast carcinoma .a 4107 to 4201 1 to 94       94/95
(98 %)
7 diff
(92.7 %id)
AA916809 breast .a 4128 to 4456 330 to 2       329/330
(99 %)
0 diff
(100 %id)
BM990589 lung, Lung Focal Fibrosis .a 4166 to 4890 740 to 19   AAA   722/722
(100 %)
3 diff
(99.6 %id)
AA977917 Kidney, kidney tumor .a 4263 to 4505 268 to 26       243/268
(90 %)
0 diff
(100 %id)
BX504175   .a 4306 to 4890 604 to 20   AAA   585/585
(100 %)
0 diff
(100 %id)
BM555091 duodenal adenocarcinoma, cell line, small intestine .a 4331 to 5375 1 to 1058       1058/1059
(99 %)
34 diff
(96.8 %id)
AI874134 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4419 to 4831 419 to 6       414/419
(98 %)
0 diff
(100 %id)
AA101719 lung, lung carcinoma .a 4480 to 4816 337 to 1       337/359
(93 %)
3 diff
(99.2 %id)
BM313934 insulinoma, Pancreas .a 4777 to 5087 22 to 331       310/331
(93 %)
6 diff
(98.2 %id)
GD153310   .a 4777 to 4832 61 to 6     Submitted on the opposite strand 56/68
(82 %)
0 diff
(100 %id)
BU071402 insulinoma, Pancreas .a 4819 to 5452 635 to 1       635/635
(100 %)
5 diff
(99.3 %id)
CK905149 insulinoma, Pancreas .a 4844 to 5460 617 to 1   tiling clone,   617/617
(100 %)
0 diff
(100 %id)
CA867241 Pancreas, Purified pancreatic islet .a 4869 to 5477 613 to 5       609/613
(99 %)
0 diff
(100 %id)
CA865961 Pancreas, Purified pancreatic islet .a 4888 to 5477 592 to 3       590/592
(99 %)
0 diff
(100 %id)
BU785408 Pancreas, Purified pancreatic islet .a 4903 to 5477 577 to 3       575/577
(99 %)
0 diff
(100 %id)
BM313669 insulinoma, Pancreas .a 4958 to 5422 465 to 1       465/465
(100 %)
1 diff
(99.8 %id)
BX114229 heart .a 5107 to 5476 1 to 369   AAA   369/369
(100 %)
2 diff
(99.5 %id)
AI131450 heart .a 5138 to 5477 341 to 2   tiling clone,   340/341
(99 %)
0 diff
(100 %id)
AB073395   .b 1 to 1844 1 to 1844 V214M D240N T289A tiling clone,   1844/1844
(100 %)
3 diff
(99.9 %id)
AU253721 neuroblastoma .b 1 to 628 1 to 629       629/629
(100 %)
6 diff
(99.1 %id)
AU253722 neuroblastoma .b 1232 to 1841 607 to 1       607/611
(99 %)
6 diff
(99.1 %id)
AK021519 whole embryo, mainly head .c 1 to 1588 2 to 1589 N125D tiling clone, available from FLJ,   1589/1589
(100 %)
2 diff
(99.9 %id)
AU117494 whole embryo, mainly head .c 1 to 694 2 to 695   capped   694/694
(100 %)
2 diff
(99.8 %id)
AU144306 whole embryo, mainly head .c 1089 to 1588 498 to 1       498/540
(92 %)
10 diff
(98.2 %id)
CB998383 Blood vessels - aorta, basilar and artery .d 1 to 697 1 to 700   tiling clone,   700/706
(99 %)
9 diff
(98.8 %id)
GD144679   .d 546 to 702 1 to 157   tiling clone,   157/165
(95 %)
2 diff
(98.8 %id)
GD151402   .d 546 to 702 1 to 158       158/166
(95 %)
4 diff
(97.6 %id)
CR743719 Kidney .e 1 to 484 1 to 484 exact tiling clone,   484/484
(100 %)
0 diff
(100 %id)
CD678627 eye, Trabecular meshwork .f 1 to 617 1 to 616 exact tiling clone,   616/616
(100 %)
1 diff
(99.9 %id)
AV711245 adrenal cortico adenoma for Cushing'ssyndrome .g 1 to 649 1 to 649 exact tiling clone,   649/651
(99 %)
1 diff
(99.9 %id)
H70812 liver and spleen .h 1 to 454 1 to 460   tiling clone,   460/466
(98 %)
12 diff
(97.5 %id)
TI_159714913   .h 208 to 1089 957 to 86 S43L N48D AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 872/1026
(84 %)
38 diff
(96.3 %id)
H73989 liver and spleen .h 265 to 575 1 to 321   tiling clone,   321/383
(83 %)
16 diff
(95.9 %id)
TI_149291497   .h 288 to 1089 871 to 77 exact AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 795/904
(87 %)
10 diff
(98.9 %id)
BM974112 lung .h 348 to 1089 758 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 740/740
(100 %)
4 diff
(99.5 %id)
AA702493 liver and spleen .h 493 to 1085 593 to 1 W34C R36A L37S L38W D39T ...     593/593
(100 %)
3 diff
(99.5 %id)
BQ003150 Chondrosarcoma, Left Pelvis .h 526 to 1089 579 to 16 N48D AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 564/564
(100 %)
1 diff
(99.9 %id)
CB322054 Human Lung Epithelial cells, lung .h 536 to 1089 572 to 19 S43L N48D AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 554/554
(100 %)
2 diff
(99.7 %id)
AI248774 liver and spleen .h 602 to 1086 499 to 15 exact AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 485/485
(100 %)
0 diff
(100 %id)
H73944 liver and spleen .h 654 to 1086 442 to 5 R19X E24X Y26X D39X E46X ...     438/445
(98 %)
13 diff
(97.1 %id)
H70813 liver and spleen .h 819 to 1088 279 to 2 R4X M8Y S9G F10L S12P ...     278/279
(99 %)
8 diff
(97.2 %id)
BG548940 lung .i-u 1 to 762 1 to 766 F14S V31F L32Y Q33K D34M ... tiling clone,   766/768
(99 %)
13 diff
(98.4 %id)
BF791395 adrenal cortex carcinoma, cell line, adrenal gland .j 1 to 644 1 to 644 exact tiling clone, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 644/644
(100 %)
3 diff
(99.6 %id)
AL602821 human skeletal muscle .k-u 1 to 630 1 to 630 exact tiling clone,   630/630
(100 %)
1 diff
(99.9 %id)
AW005879 anaplastic oligodendroglioma, brain .k-u 196 to 347 152 to 1   tiling clone,   152/152
(100 %)
0 diff
(100 %id)
CD102584 Pooled-Skin .l-u 1 to 547 1 to 543 exact tiling clone,   543/549
(98 %)
6 diff
(99.0 %id)
AA628803   .m-u 1 to 283 283 to 1 R19G tiling clone,   283/283
(100 %)
2 diff
(99.3 %id)
AB082523 brain Gene TTC21B, variant not shown       available from KIAA, Suspected internal deletion, this clone was ignored    
AK057906 brain Gene TTC21B, variant not shown       available from FLJ,      
BE161458 head_neck Gene TTC21B, variant not shown         Submitted on the opposite strand    
BF856714 prostate_tumor Gene TTC21B, variant not shown              
BF997715 placenta_normal Gene TTC21B, variant not shown              
DB311498 thalamus Gene TTC21B, variant not shown              
DA382680 thalamus Gene TTC21B, variant not shown       capped      
BX092716 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene TTC21B, variant not shown         Suspected internal deletion, this clone was ignored    
CR743968 Prostate Gene TTC21B, variant not shown              
BX402648 Placenta Cot 25-normalized Gene TTC21B, variant not shown         Suspected internal deletion, this clone was ignored    
BX402649 Placenta Cot 25-normalized Gene TTC21B, variant not shown         Suspected internal deletion, this clone was ignored    
FN081558 breast carcinoma Gene TTC21B, variant not shown              
AI537921 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene TTC21B, variant not shown         Suspected internal deletion, this clone was ignored    
AI673028 thymus, pooled Gene TTC21B, variant not shown       AAA      
AW104911 pooled Gene TTC21B, variant not shown         This clone was ignored    
AW298482   Gene TTC21B, variant not shown       AAA      
BM471840 eye, retinoblastoma Gene TTC21B, variant not shown              
CD251671 brain, Pituitary Gene TTC21B, variant not shown              
CD722326 eye, lacrimal gland Gene TTC21B, variant not shown              
DB185855 liver, tumor tissue Gene TTC21B, variant not shown       capped This clone was ignored    
DB347667 liver, tumor tissue Gene TTC21B, variant not shown         This clone was ignored    
DB226773 trachea Gene TTC21B, variant not shown       capped      
DB349740 trachea Gene TTC21B, variant not shown              
BM697260 eye, fetal eyes Gene TTC21B, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k-u, .l-u, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C