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Gene C7orf43TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
109 supporting clones for gene C7orf43 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_44459089   .a 1 to 872 62 to 935   tiling clone,   874/935
(93 %)
10 diff
(99.0 %id)
BG830412 epithelioid carcinoma cell line, Pancreas .a 3 to 544 1 to 543       543/544
(99 %)
17 diff
(96.9 %id)
BI521085 pooled pancreas and spleen .a 7 to 550 1 to 564       564/743
(75 %)
23 diff
(97.0 %id)
DC296140 synovial membrane tissue from rheumatioidarthritis .a 7 to 320 1 to 314       314/314
(100 %)
0 diff
(100 %id)
BI518524 leukocyte .a 8 to 872 1 to 867       867/867
(100 %)
5 diff
(99.5 %id)
TI_57237522   .a 9 to 675 28 to 703       676/762
(88 %)
15 diff
(98.1 %id)
BI910771 leukocyte .a 10 to 675 1 to 675       675/734
(91 %)
23 diff
(96.9 %id)
CR998092 T-Lymphocytes .a 11 to 280 1 to 270       270/270
(100 %)
1 diff
(99.7 %id)
CB997229 placenta, pre-eclamptic placenta .a 12 to 557 16 to 566       551/858
(64 %)
6 diff
(99.4 %id)
CX865538 embryonic stem .a 15 to 552 1 to 538       538/538
(100 %)
1 diff
(99.9 %id)
CR987388 T-Lymphocytes .a 17 to 330 1 to 314       314/319
(98 %)
2 diff
(99.4 %id)
CR998833 T-Lymphocytes .a 17 to 330 1 to 314       314/318
(98 %)
3 diff
(99.1 %id)
BX283542 lymph, lymphoma, cell line .a 18 to 512 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
BM909399 lymph, lymphoma, cell line .a 20 to 394 1 to 375       375/1418
(26 %)
1 diff
(100.0 %id)
BQ066433 lymph, lymphoma, cell line .a 20 to 395 1 to 376       376/416
(90 %)
1 diff
(99.8 %id)
CN334987 embryonic stem cells, cell lines H1, H7, andH9 .a 22 to 333 1 to 312       312/312
(100 %)
0 diff
(100 %id)
BI910126 leukocyte .a 22 to 853 1 to 839       839/860
(97 %)
39 diff
(95.5 %id)
TI_57235884   .a 23 to 853 29 to 866       838/887
(94 %)
34 diff
(96.2 %id)
BC094727 Placenta, pre-eclamptic .a 24 to 2539 1 to 2515 P223R V224F L225* tiling clone, AAA   2515/2515
(100 %)
3 diff
(99.9 %id)
BC015722 Skin, melanotic melanoma. .a 30 to 2541 1 to 2512 exact available from MGC, AAA   2512/2512
(100 %)
1 diff
(100.0 %id)
AL529614 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 30 to 1179 1 to 1137       1133/1137
(99 %)
22 diff
(98.1 %id)
NM_018275.3   .a 30 to 2541 1 to 2512 exact RefSeq, AAA   2512/2512
(100 %)
1 diff
(100.0 %id)
BE891485 melanotic melanoma, skin .a 36 to 544 1 to 515       515/519
(99 %)
12 diff
(97.7 %id)
BM807210 duodenal adenocarcinoma, cell line, small intestine .a 57 to 711 1 to 662       662/1048
(63 %)
23 diff
(97.9 %id)
BI912426 leukocyte .a 96 to 633 99 to 644       546/812
(67 %)
25 diff
(97.0 %id)
TI_57247512   .a 96 to 633 141 to 686       546/854
(63 %)
25 diff
(97.1 %id)
CV022896 mixed .a 210 to 662 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
BX340711   .a 388 to 845 94 to 547       547/547
(100 %)
12 diff
(97.9 %id)
DB033319 testis .a 481 to 1056 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BM563927 brain, medulla .a 527 to 1400 15 to 897       883/1116
(79 %)
23 diff
(98.0 %id)
BQ067958 brain .a 580 to 1435 13 to 884       872/1036
(84 %)
37 diff
(96.5 %id)
TI_57240967   .a 582 to 1347 32 to 790       759/790
(96 %)
14 diff
(98.3 %id)
BI913074 brain .a 583 to 1347 1 to 759       759/759
(100 %)
11 diff
(98.6 %id)
BC002749 Uterus, endometrium adenocarcinoma .a 588 to 2539 1 to 1951   tiling clone, available from MGC, AAA   1951/1951
(100 %)
1 diff
(100.0 %id)
BE394404 endometrium, adenocarcinoma cell line, uterus .a 608 to 1203 1 to 601   available from MGC,   601/647
(92 %)
10 diff
(98.5 %id)
AL529613 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 1452 to 2513 1063 to 1       1063/1136
(93 %)
17 diff
(98.6 %id)
AL553981 placenta, Placenta Cot 25-normalized .b 1 to 652 1 to 654   tiling clone,   654/654
(100 %)
39 diff
(94.1 %id)
AL576836 placenta, Placenta Cot 25-normalized .b 896 to 1802 903 to 2   tiling clone,   778/903
(86 %)
34 diff
(96.3 %id)
BG743869 blood, natural killer cells, cell line .c 1 to 527 1 to 526   tiling clone,   526/581
(90 %)
7 diff
(98.8 %id)
AK302342 testis .c 685 to 2184 1 to 1500 V46M tiling clone,   1500/1500
(100 %)
1 diff
(100.0 %id)
DC399618 testis .c 685 to 1230 1 to 547       547/547
(100 %)
2 diff
(99.7 %id)
BG744557 blood, natural killer cells, cell line .c 722 to 1101 380 to 1   tiling clone,   380/380
(100 %)
4 diff
(99.0 %id)
AK054872 cerebellum .d 1 to 2047 2 to 2048   tiling clone, available from FLJ,   2048/2048
(100 %)
2 diff
(100.0 %id)
DA057022 cerebellum .d 1 to 493 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
BI831178 brain, medulla .d 28 to 629 25 to 626       602/626
(96 %)
6 diff
(99.1 %id)
TI_57177043   .d 28 to 629 95 to 696       602/696
(86 %)
6 diff
(99.2 %id)
BI521504 pooled pancreas and spleen .d 236 to 1063 1 to 837       837/961
(87 %)
25 diff
(97.4 %id)
BE091559 breast .d 314 to 616 14 to 315       302/325
(92 %)
11 diff
(96.7 %id)
TI_159677214   .d 337 to 1292 51 to 996       946/1056
(89 %)
21 diff
(98.1 %id)
BX329310   .d 352 to 1252 895 to 1       895/895
(100 %)
19 diff
(97.9 %id)
CF131592 Chondrosarcoma Lung Metastasis cell lines, lung .d 353 to 1141 16 to 803       794/803
(98 %)
8 diff
(99.1 %id)
CR978274 T-Lymphocytes .d 464 to 1295 1 to 833       833/836
(99 %)
2 diff
(99.8 %id)
CV807512 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 487 to 1204 1 to 717       717/717
(100 %)
1 diff
(99.9 %id)
BP208448 cerebellum .d 503 to 1087 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
DR760974 embryonic stem .d 829 to 1607 1 to 779       779/779
(100 %)
0 diff
(100 %id)
AI909854 breast .d 924 to 1182 259 to 2       258/260
(99 %)
8 diff
(97.0 %id)
BX342434   .d 1111 to 2007 898 to 1       759/1153
(65 %)
76 diff
(93.5 %id)
BQ638779 eye, retina .d 1148 to 1621 26 to 499       474/499
(94 %)
6 diff
(98.8 %id)
DR760606 embryonic stem .d 1319 to 1984 666 to 1     Submitted on the opposite strand 666/666
(100 %)
0 diff
(100 %id)
CK903748 Islets of Langerhans, Pancreas .d 1323 to 1837 1 to 515       515/515
(100 %)
0 diff
(100 %id)
BI964086 Islets of Langerhans, Pancreas .d 1339 to 1839 1 to 501       501/501
(100 %)
0 diff
(100 %id)
BI964253 Islets of Langerhans, Pancreas .d 1339 to 1839 1 to 501       501/501
(100 %)
0 diff
(100 %id)
CV575797 cornea, eye .d 1359 to 1692 1 to 334       334/334
(100 %)
0 diff
(100 %id)
AL043294 testis .d 1393 to 2041 1 to 650       650/660
(98 %)
3 diff
(99.6 %id)
BQ005973 Chondrosarcoma, Left Pelvis .d 1408 to 2047 659 to 19   AAA   641/641
(100 %)
1 diff
(99.9 %id)
BX374224   .d 1504 to 2047 550 to 4       547/744
(73 %)
0 diff
(100 %id)
AA477176 ovarian tumor, ovary .d 1509 to 1720 1 to 208       208/208
(100 %)
4 diff
(98.1 %id)
AI190043 heart .d 1611 to 2051 444 to 4       441/444
(99 %)
0 diff
(100 %id)
AA610597 breast .d 1628 to 2047 419 to 1       419/419
(100 %)
2 diff
(99.6 %id)
CK903747 Islets of Langerhans, Pancreas .d 1628 to 2047 444 to 25   AAA   420/420
(100 %)
2 diff
(99.6 %id)
DB296664 cerebellum .d 1630 to 2047 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
AA837456 germinal center B cell .d 1635 to 2051 421 to 6       416/421
(98 %)
0 diff
(100 %id)
AI553975 pooled .d 1636 to 2044 413 to 5       409/413
(99 %)
0 diff
(100 %id)
BI963806 Islets of Langerhans, Pancreas .d 1660 to 2047 412 to 25   AAA   388/388
(100 %)
3 diff
(99.3 %id)
AI678979 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 1661 to 2049 420 to 32   AAA   389/389
(100 %)
10 diff
(97.5 %id)
AW118951 pooled .d 1672 to 2048 380 to 4       377/380
(99 %)
0 diff
(100 %id)
R82289 placenta .d 1691 to 2022 1 to 340   AAA   340/376
(90 %)
14 diff
(96.3 %id)
AI022758 liver and spleen .d 1709 to 2047 339 to 1       339/339
(100 %)
2 diff
(99.5 %id)
AA916395 adenocarcinoma, colon .d 1728 to 2047 356 to 38       319/356
(89 %)
0 diff
(100 %id)
AI809435 pooled .d 1739 to 2047 332 to 24   AAA   309/309
(100 %)
13 diff
(95.8 %id)
AW470969 lung, two pooled squamous cell carcinomas .d 1793 to 2048 257 to 1       257/290
(88 %)
5 diff
(98.3 %id)
AI688011 colon .d 1812 to 2047 260 to 25   AAA   236/236
(100 %)
3 diff
(98.8 %id)
AA426089   .d 1828 to 2051 227 to 3       225/227
(99 %)
0 diff
(100 %id)
BF508036   .d 1853 to 2047 216 to 21       196/216
(90 %)
0 diff
(100 %id)
AI286300 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 1857 to 2040 185 to 1       185/185
(100 %)
1 diff
(99.5 %id)
AA634501   .d 1866 to 2048 187 to 4       184/187
(98 %)
0 diff
(100 %id)
AI540672 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 1877 to 2047 196 to 26   AAA   171/171
(100 %)
0 diff
(100 %id)
GD136671   .d 1955 to 2188 246 to 8   tiling clone, Submitted on the opposite strand 239/247
(96 %)
0 diff
(100 %id)
EC527257 Prostate .d 1966 to 2048 1 to 82       82/82
(100 %)
1 diff
(98.8 %id)
EC541456 Prostate .d 1966 to 2041 1 to 75       75/84
(89 %)
2 diff
(97.7 %id)
EC549354 Prostate .d 1966 to 2048 1 to 84       84/85
(98 %)
2 diff
(97.7 %id)
AL045350 testis .e 1 to 631 1 to 634   tiling clone,   634/634
(100 %)
5 diff
(99.3 %id)
BG979770 colon_normal .e 575 to 1016 1 to 442   tiling clone,   442/442
(100 %)
6 diff
(98.7 %id)
BI758737 brain .f 1 to 781 27 to 819   tiling clone,   793/831
(95 %)
39 diff
(95.4 %id)
TI_57220472   .f 1 to 781 27 to 819       793/831
(95 %)
39 diff
(95.4 %id)
AL547889 placenta, Placenta Cot 25-normalized .f 13 to 962 1 to 939   tiling clone, to resequence,   939/940
(99 %)
42 diff
(95.6 %id)
AL572666 placenta, Placenta Cot 25-normalized .f 1063 to 2024 959 to 1   tiling clone, to resequence,   959/1082
(88 %)
58 diff
(94.7 %id)
BF769762 epid_tumor .g 1 to 356 1 to 356   tiling clone,   356/356
(100 %)
1 diff
(99.8 %id)
R21690 whole brain .g 297 to 671 1 to 387   tiling clone,   385/456
(84 %)
26 diff
(94.3 %id)
AL136555 amygdala .g 643 to 1897 1 to 1253 S123R I166S T167R P169L V170W ... tiling clone, available from DKFZ,   1253/1257
(99 %)
13 diff
(99.0 %id)
T96008 liver and spleen .g 759 to 1112 1 to 359   tiling clone,   359/360
(99 %)
22 diff
(93.9 %id)
R46582 whole brain .g 1437 to 1893 490 to 16   tiling clone, AAA   475/476
(99 %)
35 diff
(92.7 %id)
DA825720 pericardium .h 1 to 558 2 to 559 exact tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DR000698 fetal brain .h 94 to 625 8 to 541       534/541
(98 %)
4 diff
(99.3 %id)
DB116453 thymus .h 422 to 966 2 to 546   tiling clone, capped   545/545
(100 %)
2 diff
(99.7 %id)
CN426832 embryonic stem cells, cell lines H1, H7, andH9 .h 472 to 1165 1 to 694   tiling clone,   694/694
(100 %)
1 diff
(99.9 %id)
BF952017 nervous_normal .h 529 to 1017 1 to 490       490/504
(97 %)
9 diff
(98.3 %id)
AA325313 brain, cerebellum .h 702 to 887 1 to 186       186/186
(100 %)
0 diff
(100 %id)
BF822506 kidney_tumor .h 744 to 1128 1 to 384       384/384
(100 %)
9 diff
(97.7 %id)
AK001787 ovarian cancer .i 1 to 1617 1 to 1617 exact tiling clone, available from FLJ,   1617/1617
(100 %)
2 diff
(99.9 %id)
AU133700 ovary, tumor tissue .i 2 to 653 2 to 654 exact capped   653/655
(99 %)
4 diff
(99.4 %id)
AU154931 ovary, tumor tissue .i 1195 to 1617 425 to 1       425/425
(100 %)
5 diff
(98.9 %id)
CN334988 embryonic stem cells, DMSO-treated H9 cellline Gene C7orf43, variant not shown         Suspected internal deletion, this clone was ignored    
AK310170 synovial membrane tissue from rheumatoidarthritis Gene C7orf43, variant not shown         Suspected internal deletion, this clone was ignored    
AW299557 Kidney Gene C7orf43, variant not shown         Suspected internal deletion, this clone was ignored    
CD358241 testis Gene C7orf43, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI