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Gene NEIL3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
73 supporting clones for gene NEIL3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP222205   .a 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
NM_018248.2   .a 2 to 2403 1 to 2402 G520R RefSeq,   2402/2402
(100 %)
1 diff
(100.0 %id)
BP380910   .a 2 to 548 1 to 547       547/550
(99 %)
2 diff
(99.7 %id)
BP364315 lung .a 18 to 599 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BQ422423 embryonal carcinoma, cell line, testis .a 21 to 403 1 to 385       385/1252
(30 %)
8 diff
(99.4 %id)
BP374941 umbilical cord .a 29 to 609 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BF103925 embryonal carcinoma, testis .a 36 to 734 1 to 696       696/795
(87 %)
31 diff
(96.2 %id)
DB154514 thymus .a 36 to 630 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
AK001720   .a 39 to 2311 1 to 2273 L35P P443L Q471H G520R available from FLJ,   2273/2273
(100 %)
7 diff
(99.7 %id)
DA477530   .a 40 to 606 2 to 571   capped   570/570
(100 %)
5 diff
(99.2 %id)
AU133212   .a 40 to 820 2 to 783   capped   782/869
(89 %)
3 diff
(99.7 %id)
EC454194 Prostate .a 44 to 141 1 to 98       98/98
(100 %)
4 diff
(96.0 %id)
BG397668 B-cells, primary B-cells from tonsils (cell line) .a 45 to 708 1 to 663       663/663
(100 %)
6 diff
(99.1 %id)
BG758440 B-cells, primary B-cells from tonsils (cell line) .a 45 to 656 1 to 612       612/612
(100 %)
8 diff
(98.7 %id)
BC025954 Primary B-Cells from Tonsils .a 46 to 2047 1 to 1998 P117R P443L Q471H G520R available from MGC, AAA   1998/1998
(100 %)
10 diff
(99.5 %id)
CN426740 embryonic stem cells, DMSO-treated H9 cellline .a 48 to 695 1 to 648       648/648
(100 %)
0 diff
(100 %id)
BG026947 Bone, osteosarcoma, cell line .a 53 to 691 1 to 635       635/635
(100 %)
4 diff
(99.4 %id)
BQ687469 ductal carcinoma, cell line, Pancreas .a 54 to 909 1 to 864       862/895
(96 %)
20 diff
(97.8 %id)
BM458786 lymph, lymphoma, cell line .a 62 to 948 1 to 892       892/1141
(78 %)
14 diff
(98.8 %id)
BQ054308 blood, natural killer cells, cell line .a 62 to 882 1 to 830       830/945
(87 %)
14 diff
(98.6 %id)
BP233928 coronary artery .a 71 to 656 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
BP244723 Kidney .a 71 to 652 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP357866 mammary gland .a 71 to 652 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP366116 lung .a 71 to 653 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BE882646 leiomyosarcoma, uterus .a 72 to 566 1 to 499       499/892
(55 %)
10 diff
(98.9 %id)
BQ220911 embryonal carcinoma, cell line, testis .a 75 to 821 1 to 749       749/1086
(68 %)
6 diff
(99.5 %id)
CR605089 Neuroblastoma Cot 25-normalized .a 78 to 2272 1 to 2195 exact tiling clone,   2195/2195
(100 %)
0 diff
(100 %id)
AL528028 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 78 to 1149 1 to 1063       1063/1074
(98 %)
21 diff
(98.1 %id)
BE885006.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .a 82 to 734 1 to 654   available from MGC, Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene NR1D2 654/668
(97 %)
15 diff
(97.8 %id)
DN997066 breast cancer, Mammary gland (cancer tissue) .a 91 to 858 1 to 768       768/768
(100 %)
5 diff
(99.4 %id)
AB079071 skin .a 119 to 1936 1 to 1818 P443L Q471H G520R     1818/1818
(100 %)
6 diff
(99.7 %id)
BU173488 leiomyosarcoma, uterus .a 130 to 957 1 to 831       831/831
(100 %)
12 diff
(98.6 %id)
CV340050 breast .a 187 to 403 1 to 215       215/216
(99 %)
23 diff
(89.4 %id)
AA373561 lung .a 192 to 466 1 to 278       278/280
(99 %)
14 diff
(95.0 %id)
FN153643 breast carcinoma .a 479 to 551 1 to 75       75/75
(100 %)
4 diff
(94.7 %id)
BX391576 Neuroblastoma Cot 25-normalized .a 529 to 1431 898 to 1       898/898
(100 %)
16 diff
(98.3 %id)
BU170388 eye, retinoblastoma .a 611 to 1543 1 to 931       931/932
(99 %)
17 diff
(98.2 %id)
BG388415 embryonal carcinoma, cell line, testis .a 612 to 853 1 to 241       241/242
(99 %)
4 diff
(98.4 %id)
BG122779 adenocarcinoma, cell line, Liver .a 795 to 1130 1 to 341       341/950
(35 %)
9 diff
(99.1 %id)
BX391575 Neuroblastoma Cot 25-normalized .a 805 to 1431 627 to 1       627/677
(92 %)
20 diff
(97.1 %id)
BF664630 brain, primitive neuroectoderm .a 924 to 1552 1 to 623       623/889
(70 %)
22 diff
(97.6 %id)
BF700528 brain, primitive neuroectoderm .a 924 to 1654 1 to 720       720/871
(82 %)
25 diff
(97.2 %id)
BX112923 germinal center B cell .a 1098 to 1823 1 to 725       725/725
(100 %)
7 diff
(99.1 %id)
AL528027 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1160 to 2272 1100 to 1       1100/1107
(99 %)
23 diff
(98.0 %id)
BF217043 brain, glioblastoma .a 1205 to 1942 1 to 743       745/859
(86 %)
56 diff
(93.5 %id)
BF030084 hypernephroma, Kidney .a 1308 to 1885 1 to 572       572/862
(66 %)
16 diff
(98.2 %id)
CN426741 embryonic stem cells, DMSO-treated H9 cellline .a 1360 to 2148 1 to 789       789/790
(99 %)
9 diff
(98.9 %id)
BG495300 lung, mucoepidermoid carcinoma .a 1424 to 2108 1 to 686       686/777
(88 %)
12 diff
(98.5 %id)
T85431 liver and spleen .a 1458 to 1750 1 to 299       299/500
(59 %)
11 diff
(97.8 %id)
BQ441413 testis .a 1482 to 2271 1 to 796       796/800
(99 %)
16 diff
(98.0 %id)
CU446829 epidermis .a 1528 to 2128 9 to 608       600/622
(96 %)
8 diff
(98.8 %id)
TI_149312226   .a 1622 to 2374 838 to 86   AAA   753/944
(79 %)
1 diff
(99.9 %id)
BU689565 lung .a 1624 to 2374 769 to 19   AAA   751/751
(100 %)
1 diff
(99.9 %id)
CB145683 Liver .a 1787 to 2224 14 to 453       440/453
(97 %)
6 diff
(98.7 %id)
AU154583   .a 1833 to 2311 479 to 1       479/481
(99 %)
0 diff
(100 %id)
AA677552 liver and spleen .a 1867 to 2374 508 to 1       508/508
(100 %)
0 diff
(100 %id)
AI074567 liver and spleen .a 1926 to 2383 459 to 2       458/459
(99 %)
0 diff
(100 %id)
BE092698 breast .a 1931 to 2177 248 to 1     Submitted on the opposite strand 248/254
(97 %)
5 diff
(98.1 %id)
BE092694 breast .a 1932 to 2178 7 to 253       247/253
(97 %)
6 diff
(97.7 %id)
BE092683 breast .a 1940 to 2178 240 to 1     Submitted on the opposite strand 240/240
(100 %)
2 diff
(99.2 %id)
BF332718 breast .a 1940 to 2052 117 to 5       113/117
(96 %)
0 diff
(100 %id)
BF509892   .a 1961 to 2403 460 to 18   tiling clone, AAA   443/443
(100 %)
4 diff
(99.1 %id)
BU960681 mixed (pool of 40 RNAs) .a 1987 to 2375 1 to 390       390/394
(98 %)
2 diff
(99.5 %id)
AA848076 germinal center B cell .a 2030 to 2400 404 to 34   AAA   371/371
(100 %)
3 diff
(99.2 %id)
AA731207 germinal center B cell .a 2036 to 2400 398 to 34   AAA   365/365
(100 %)
7 diff
(98.1 %id)
AI419161 brain, glioblastoma (pooled) .a 2109 to 2403 296 to 1       296/296
(100 %)
1 diff
(99.7 %id)
CX865449 embryonic stem .b 1 to 804 19 to 822 exact tiling clone,   804/822
(97 %)
6 diff
(99.3 %id)
AK307692 thymus .c 1 to 1527 2 to 1527 exact tiling clone,   1527/1527
(100 %)
3 diff
(99.9 %id)
DB144296 thymus .c 1 to 543 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
AI307746 2 pooled tumors (clear cell type), Kidney .d-u 1 to 595 599 to 5 exact tiling clone,   595/599
(99 %)
0 diff
(100 %id)
AA815079 germinal center B cell .d-u 137 to 596 482 to 23 A5L R6G tiling clone, AAA   460/460
(100 %)
2 diff
(99.6 %id)
DA822380 pericardium .e-u 1 to 569 2 to 571 G28R tiling clone, capped   570/570
(100 %)
2 diff
(99.7 %id)
BE865481 bladder, carcinoma, cell line Gene NEIL3, variant not shown         Suspected internal deletion, this clone was ignored    
DB134989 thymus Gene NEIL3, variant not shown       capped      
DB344909 thymus Gene NEIL3, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC