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Gene SNED1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
155 supporting clones for gene SNED1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ072492 pooled lung and spleen .a 1 to 372 22 to 393   tiling clone,   372/393
(94 %)
6 diff
(98.5 %id)
AA513412 colon .a 213 to 380 164 to 1   tiling clone,   164/164
(100 %)
10 diff
(94.0 %id)
NM_001080437.1   .a 215 to 7048 1 to 6834   RefSeq,   6834/6834
(100 %)
0 diff
(100 %id)
TI_154072295   .a 370 to 838 28 to 496   tiling clone, Submitted on the opposite strand 469/1119
(41 %)
8 diff
(99.3 %id)
BE676050 B-cell, chronic lymphotic leukemia .a 404 to 870 1 to 467     Submitted on the opposite strand 467/467
(100 %)
0 diff
(100 %id)
AI832071 colon, colon tumor, RER+ .a 472 to 676 1 to 205     Submitted on the opposite strand 205/208
(98 %)
6 diff
(97.2 %id)
AK074062 Spleen .a 607 to 5888 1 to 5282   tiling clone, available from FLJ,   5282/5282
(100 %)
0 diff
(100 %id)
BY799790 eye .a 3157 to 3466 1 to 310       310/310
(100 %)
0 diff
(100 %id)
DB274687 uterus .a 3169 to 3498 2 to 331   capped   330/330
(100 %)
0 diff
(100 %id)
BM545959 ovary (pool of 3) .a 3450 to 4420 1 to 964       964/1055
(91 %)
20 diff
(98.2 %id)
BQ670140 epidermoid carcinoma, cell line, salivary gland .a 4035 to 4925 1 to 899       899/900
(99 %)
16 diff
(98.3 %id)
BQ671225 epidermoid carcinoma, cell line, salivary gland .a 4035 to 4964 1 to 937       937/938
(99 %)
30 diff
(96.9 %id)
BQ670223 epidermoid carcinoma, cell line, salivary gland .a 4036 to 4832 1 to 798       798/925
(86 %)
19 diff
(98.0 %id)
BQ668469 epidermoid carcinoma, cell line, salivary gland .a 4038 to 5002 24 to 992       969/994
(97 %)
23 diff
(97.7 %id)
BQ673212 epidermoid carcinoma, cell line, salivary gland .a 4038 to 4934 27 to 929       903/979
(92 %)
18 diff
(98.2 %id)
BQ671222 epidermoid carcinoma, cell line, salivary gland .a 4038 to 4944 28 to 937       910/939
(96 %)
24 diff
(97.5 %id)
CA390846 eye, RPE/choroid .a 4069 to 4774 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
BF754597 colon .a 4375 to 4837 476 to 13     Submitted on the opposite strand 464/476
(97 %)
1 diff
(99.8 %id)
AA349368 brain .a 4389 to 4617 1 to 229       229/229
(100 %)
1 diff
(99.6 %id)
Z45408 brain, total brain .a 4389 to 4675 1 to 287       287/287
(100 %)
0 diff
(100 %id)
AA091149   .a 4447 to 4575 126 to 1     Submitted on the opposite strand 126/137
(91 %)
8 diff
(94.2 %id)
R74443 breast .a 4568 to 4952 1 to 387       387/387
(100 %)
4 diff
(99.0 %id)
BM686191 eye, RPE and Choroid .a 4697 to 5238 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
BX475187   .a 4786 to 5237 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
BF928844 nervous_tumor .a 4940 to 5236 1 to 297       297/297
(100 %)
0 diff
(100 %id)
BI049515 placenta_normal .a 5010 to 5404 396 to 1       396/397
(99 %)
3 diff
(99.3 %id)
BX093656 breast .a 5022 to 5754 1 to 732       732/732
(100 %)
1 diff
(99.9 %id)
R72137 breast .a 5022 to 5392 1 to 370       370/370
(100 %)
10 diff
(97.3 %id)
TI_154101446   .a 5083 to 5888 856 to 61   AAA   796/810
(98 %)
18 diff
(97.8 %id)
BU615846 Bone, Subchondral Bone .a 5118 to 5888 786 to 19   AAA   768/768
(100 %)
3 diff
(99.7 %id)
BI045700 prostate_normal .a 5147 to 5689 546 to 5       542/553
(98 %)
0 diff
(100 %id)
BM691039 eye, RPE and Choroid .a 5164 to 5822 1 to 658       658/658
(100 %)
5 diff
(99.3 %id)
TI_149290063   .a 5170 to 5888 804 to 86   AAA   719/719
(100 %)
9 diff
(98.8 %id)
BM973191 lung .a 5258 to 5888 649 to 19   AAA   631/631
(100 %)
2 diff
(99.7 %id)
TI_151769623   .a 5262 to 5889 102 to 729       628/635
(98 %)
6 diff
(99.1 %id)
AA326493 brain, cerebellum .a 5264 to 5698 1 to 440       440/440
(100 %)
12 diff
(97.3 %id)
BM695190 eye, optic nerve .a 5268 to 5891 11 to 634       624/635
(98 %)
1 diff
(99.9 %id)
EC476348 Prostate .a 5274 to 5381 1 to 108       108/108
(100 %)
2 diff
(98.2 %id)
CA441902 Chondrosarcoma, Left Pubic Bone .a 5288 to 5888 619 to 19   AAA   601/601
(100 %)
0 diff
(100 %id)
BU732231 eye, optic nerve .a 5300 to 5888 607 to 19   AAA   589/589
(100 %)
1 diff
(99.9 %id)
BQ181702 Knee, Osteoarthritic Cartilage .a 5303 to 5893 609 to 19   AAA   591/591
(100 %)
6 diff
(99.0 %id)
N73970 lung .a 5320 to 5888 568 to 1       568/568
(100 %)
5 diff
(99.2 %id)
AA385063 thyroid gland .a 5323 to 5574 1 to 252       252/252
(100 %)
0 diff
(100 %id)
AA477379.
matches multiple genes
ovarian tumor, ovary .a 5333 to 5679 1 to 347     also hits gene CYB561D2 347/347
(100 %)
2 diff
(99.5 %id)
BM998156 lung, Metastatic Chondrosarcoma .a 5340 to 5888 567 to 19   AAA   549/549
(100 %)
1 diff
(99.9 %id)
AA419156 ovarian tumor, ovary .a 5345 to 5625 1 to 281   fully sequenced,   281/281
(100 %)
2 diff
(99.3 %id)
BM662765 eye, RPE and Choroid .a 5376 to 5891 533 to 18   AAA   516/516
(100 %)
1 diff
(99.9 %id)
AI755166 bone marrow stroma .a 5390 to 5893 532 to 29   AAA   504/504
(100 %)
4 diff
(99.3 %id)
BF447084 Prostate .a 5415 to 5889 480 to 6       475/480
(98 %)
0 diff
(100 %id)
R74346 breast .a 5422 to 5870 455 to 1       455/458
(99 %)
13 diff
(97.2 %id)
AI920880 adenocarcinoma, Pancreas .a 5423 to 5885 465 to 3       463/465
(99 %)
0 diff
(100 %id)
BF061416 pooled .a 5429 to 5889 461 to 1       461/461
(100 %)
0 diff
(100 %id)
AI925857 adenocarcinoma, Pancreas .a 5445 to 5889 449 to 5       445/449
(99 %)
0 diff
(100 %id)
BP396247 pancreatic islet .a 5469 to 5892 1 to 426     Submitted on the opposite strand 426/430
(99 %)
3 diff
(99.4 %id)
BE044048 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5469 to 5889 427 to 7       421/427
(98 %)
0 diff
(100 %id)
AI354891 lung .a 5477 to 5887 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
AI271925 Kidney .a 5478 to 5888 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
AI215589 pooled .a 5479 to 5889 414 to 4       411/414
(99 %)
0 diff
(100 %id)
BU732606 eye, optic nerve .a 5480 to 5888 427 to 19   AAA   409/418
(97 %)
0 diff
(100 %id)
TI_151770399   .a 5480 to 5888 111 to 519   AAA   409/409
(100 %)
0 diff
(100 %id)
AI635236 adenocarcinoma, Pancreas .a 5483 to 5888 426 to 21   AAA   406/406
(100 %)
2 diff
(99.6 %id)
AA659919 normal prostate, Prostate .a 5485 to 5891 418 to 12   AAA   407/407
(100 %)
0 diff
(100 %id)
AI248143 liver and spleen .a 5506 to 5893 389 to 2       388/389
(99 %)
0 diff
(100 %id)
AA477132.
matches multiple genes
ovarian tumor, ovary .a 5518 to 5888 371 to 1     also hits gene C18orf25 371/371
(100 %)
0 diff
(100 %id)
BI016274 lung_tumor .a 5534 to 5686 9 to 158       150/158
(94 %)
6 diff
(96.3 %id)
AA904372 pooled .a 5538 to 5889 356 to 5       352/356
(98 %)
0 diff
(100 %id)
AI187966   .a 5542 to 5889 352 to 4       349/352
(99 %)
0 diff
(100 %id)
BQ327295 colon_normal .a 5547 to 5666 147 to 27       121/147
(82 %)
8 diff
(94.6 %id)
CA426307 Bone, Subchondral Bone .a 5548 to 5893 364 to 19   AAA   346/354
(97 %)
0 diff
(100 %id)
T33009 brain .a 5562 to 5893 332 to 1       332/332
(100 %)
0 diff
(100 %id)
CN428935 embryonic stem cells, cell lines H1, H7, andH9 .a 5567 to 6309 1 to 744   tiling clone,   744/744
(100 %)
2 diff
(99.8 %id)
AA419119 ovarian tumor, ovary .a 5595 to 5888 296 to 1   fully sequenced,   296/296
(100 %)
3 diff
(99.0 %id)
Z41119 brain, total brain .a 5621 to 5893 273 to 1       273/273
(100 %)
0 diff
(100 %id)
R72086 breast .a 5629 to 5826 199 to 1       199/199
(100 %)
1 diff
(99.5 %id)
AA666033 bone marrow stroma .a 5642 to 5888 247 to 1       247/247
(100 %)
0 diff
(100 %id)
BP395103 pancreatic islet .a 5646 to 5893 1 to 250     Submitted on the opposite strand 250/255
(98 %)
3 diff
(98.9 %id)
BF448827 sympathetic trunk .a 5668 to 5889 222 to 1       222/222
(100 %)
0 diff
(100 %id)
BF941802 fibrotheoma, ovary .a 5669 to 5888 220 to 1       220/220
(100 %)
9 diff
(96.0 %id)
BF940219 brain, glioblastoma (pooled) .a 5669 to 5885 217 to 1       217/217
(100 %)
9 diff
(95.9 %id)
BF196368 fibrotheoma, ovary .a 5669 to 5888 220 to 1       220/220
(100 %)
1 diff
(99.6 %id)
AI932928 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 5729 to 5888 175 to 15   AAA   161/161
(100 %)
2 diff
(98.8 %id)
AW072087 pooled .a 5843 to 6268 1 to 426     Submitted on the opposite strand 426/426
(100 %)
8 diff
(98.2 %id)
BF941777 fibrotheoma, ovary .a 5845 to 6196 1 to 353     Submitted on the opposite strand 353/353
(100 %)
7 diff
(98.1 %id)
N91382 parathyroid gland, parathyroid tumor .a 5850 to 6181 1 to 332     Submitted on the opposite strand 332/337
(98 %)
4 diff
(98.9 %id)
DA629938 Kidney .a 5852 to 6429 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
EB386053 eye, optic nerve .a 5936 to 6793 1 to 858   tiling clone,   858/858
(100 %)
3 diff
(99.7 %id)
DA086653 cerebellum .a 6530 to 7048 2 to 520   tiling clone, capped   519/519
(100 %)
2 diff
(99.7 %id)
TI_44159689   .b 1 to 863 16 to 887   tiling clone,   872/962
(90 %)
21 diff
(97.9 %id)
BC027939 Lung, Spleen, fetal, pooled .b 15 to 1943 1 to 1929   tiling clone, available from MGC, AAA   1929/1934
(99 %)
5 diff
(99.8 %id)
BI523954 pooled lung and spleen .b 15 to 863 1 to 858   available from MGC,   858/933
(91 %)
16 diff
(98.3 %id)
BQ230598 epithelioid carcinoma, Pancreas .b 1334 to 2203 1 to 883   tiling clone,   883/895
(98 %)
14 diff
(98.5 %id)
AK074075 Spleen .c 1 to 5492 1 to 5493 exact tiling clone, available from FLJ,   5493/5493
(100 %)
10 diff
(99.9 %id)
AL050143 uterus .c 2780 to 5492 1 to 2715   tiling clone, available from DKFZ, AAA   2715/2715
(100 %)
6 diff
(99.8 %id)
R51939 breast .c 4495 to 4846 1 to 357       357/405
(88 %)
18 diff
(95.6 %id)
TI_154040030   .c 4777 to 5492 809 to 89   AAA   721/931
(77 %)
72 diff
(92.3 %id)
TI_149284931   .c 4796 to 5492 785 to 87   AAA   699/700
(99 %)
8 diff
(98.9 %id)
TI_149293090   .c 4901 to 5500 669 to 68   AAA   602/806
(74 %)
15 diff
(98.2 %id)
BM695626 eye, optic nerve .c 4902 to 5500 1 to 600       600/600
(100 %)
4 diff
(99.4 %id)
TI_154103511   .c 4988 to 5614 711 to 85   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 627/950
(66 %)
1 diff
(99.9 %id)
BM670787 eye, fetal eyes .c 4997 to 5500 524 to 20   AAA   505/505
(100 %)
1 diff
(99.9 %id)
CK725167 Chondrosarcoma, Left Pubic Bone .c 4997 to 5614 636 to 19   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 618/618
(100 %)
0 diff
(100 %id)
BM984589 lung .c 4999 to 5492 513 to 19   AAA   495/495
(100 %)
2 diff
(99.6 %id)
BI085046 epidermoid carcinoma, cell line, salivary gland .c 5004 to 5471 491 to 22       470/725
(64 %)
0 diff
(100 %id)
W58343 heart .c 5012 to 5501 498 to 9       490/503
(97 %)
0 diff
(100 %id)
BU682448 lung .c 5012 to 5500 507 to 19   AAA   489/489
(100 %)
0 diff
(100 %id)
BQ001117 lung, Metastatic Chondrosarcoma .c 5020 to 5492 491 to 19   AAA   473/473
(100 %)
0 diff
(100 %id)
CA427414 Cell Line, Chondrosarcoma .c 5021 to 5500 498 to 19   AAA   480/480
(100 %)
0 diff
(100 %id)
R53608 breast .c 5050 to 5500 457 to 1       457/458
(99 %)
7 diff
(98.5 %id)
BF509657   .c 5051 to 5492 459 to 18   AAA   442/442
(100 %)
0 diff
(100 %id)
AI697432 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 5066 to 5500 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA918695 Kidney .c 5075 to 5501 428 to 2       427/428
(99 %)
0 diff
(100 %id)
AA948476 pooled .c 5097 to 5501 407 to 4       404/407
(99 %)
0 diff
(100 %id)
AI359274 brain, glioblastoma (pooled) .c 5130 to 5492 374 to 12   AAA   363/363
(100 %)
8 diff
(97.8 %id)
FN080385 breast carcinoma .c 5145 to 5244 1 to 101       101/101
(100 %)
1 diff
(99.1 %id)
AW296149   .c 5161 to 5501 357 to 17       341/357
(95 %)
0 diff
(100 %id)
AI559669 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 5231 to 5500 270 to 1       270/270
(100 %)
0 diff
(100 %id)
BG942736 blood .c 5499 to 5906 32 to 439       408/439
(92 %)
6 diff
(98.7 %id)
AI630358 blood .c 5504 to 5649 26 to 171       146/171
(85 %)
7 diff
(96.0 %id)
GW493257 diffuse (Lauren) gastric adenocarcinoma, stomach .c 5504 to 5785 53 to 329       277/338
(81 %)
7 diff
(98.0 %id)
BF111036 carcinoid, lung .c 5536 to 5819 284 to 1   tiling clone,   284/285
(99 %)
2 diff
(99.3 %id)
AI681562 carcinoid, lung .c 5557 to 6127 571 to 1       571/571
(100 %)
3 diff
(99.5 %id)
BF433407 carcinoid, lung .c 5596 to 6137 550 to 9   tiling clone,   542/550
(98 %)
0 diff
(100 %id)
BF196121 carcinoid, lung .c 5639 to 6137 508 to 10       499/508
(98 %)
0 diff
(100 %id)
DB518143.
matches multiple genes
testis .c 5661 to 6101 441 to 1     also hits gene MTERFD2 441/441
(100 %)
0 diff
(100 %id)
BE671340 carcinoid, lung .c 5704 to 6125 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
BI007491 kidney_tumor .c 5771 to 6076 1 to 305       305/305
(100 %)
5 diff
(98.4 %id)
T20118   .c 6100 to 6299 1 to 200   tiling clone,   200/238
(84 %)
8 diff
(96.7 %id)
FN175928 breast carcinoma .c 6112 to 6216 1 to 104   tiling clone,   104/104
(100 %)
1 diff
(99.1 %id)
FN137967 breast carcinoma .c 6207 to 6310 1 to 108   tiling clone,   108/109
(99 %)
6 diff
(94.5 %id)
AF439718   .d 1 to 1726 1 to 1726 exact tiling clone, AAA   1726/1726
(100 %)
2 diff
(99.9 %id)
DA872689 Prostate .d 148 to 637 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
BI000860 head_normal .d 1169 to 1395 6 to 232       227/239
(94 %)
6 diff
(97.5 %id)
DB330004 Prostate .d 2200 to 2741 542 to 1   tiling clone,   542/542
(100 %)
1 diff
(99.9 %id)
BQ642284 lymph, lymphoma, cell line .e 1 to 886 1 to 890   tiling clone,   890/906
(98 %)
34 diff
(96.3 %id)
BG828068 muscle, rhabdomyosarcoma .e 472 to 1337 1 to 862   tiling clone,   862/885
(97 %)
29 diff
(96.8 %id)
BG696288 skin .f 1 to 816 1 to 820 A40D D51V C53L L54P N55E ... tiling clone,   820/820
(100 %)
14 diff
(98.3 %id)
BQ710262 Spleen .g 1 to 776 1 to 784 Q84R G206S V208G G210W R211G ... tiling clone,   784/884
(88 %)
16 diff
(98.2 %id)
BQ926604 sciatic nerve .g 93 to 871 1 to 786   tiling clone,   786/915
(85 %)
26 diff
(97.2 %id)
AL833363 lymph node .h 1 to 4124 1 to 4123 L55P tiling clone, available from DKFZ, AAA   4123/4123
(100 %)
5 diff
(99.9 %id)
AL706100 human skeletal muscle .h 1709 to 2461 1 to 752       752/752
(100 %)
3 diff
(99.7 %id)
BQ710711 Spleen .h 2968 to 3844 1 to 883       883/893
(98 %)
25 diff
(97.3 %id)
BQ313289 breast_normal .h 3157 to 3395 7 to 246       240/251
(95 %)
4 diff
(98.5 %id)
AA078739 Pancreas .h 3518 to 3889 1 to 374       374/374
(100 %)
5 diff
(98.7 %id)
AV697037 hepatocellular carcinoma .h 3680 to 4278 1 to 595   tiling clone,   595/631
(94 %)
6 diff
(99.1 %id)
BU631161 cell lines, Chondrosarcoma .i 1 to 663 677 to 17 G7A S8L A9R V10C C11V ... tiling clone, AAA   661/661
(100 %)
2 diff
(99.7 %id)
BQ344554 nervous_tumor .j-u 1 to 325 55 to 384   tiling clone,   330/384
(85 %)
10 diff
(97.4 %id)
EC444287 Prostate .j-u 85 to 179 1 to 94       94/97
(96 %)
3 diff
(97.0 %id)
EC530852 Prostate .j-u 88 to 168 1 to 80   tiling clone,   80/80
(100 %)
3 diff
(96.3 %id)
EC439722 Prostate .j-u 109 to 186 1 to 78       78/86
(90 %)
2 diff
(97.7 %id)
EC485456 Prostate .j-u 111 to 186 1 to 76       76/84
(90 %)
2 diff
(97.7 %id)
CX762541 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .j-u 250 to 985 733 to 1 exact tiling clone,   733/737
(99 %)
30 diff
(96.0 %id)
BF835781 head_neck .j-u 406 to 842 17 to 451 exact tiling clone,   435/464
(93 %)
5 diff
(99.0 %id)
BG954143 colon .j-u 644 to 990 1 to 345   tiling clone,   345/345
(100 %)
4 diff
(98.9 %id)
BQ027923 mixed .k-u 1 to 562 580 to 19 G9X C31S tiling clone, AAA   562/562
(100 %)
4 diff
(99.3 %id)
BE936715 ovary .l-u 1 to 151 5 to 155 I2H L9Y Q10K S11A V14* tiling clone,   151/155
(97 %)
5 diff
(96.8 %id)
AF439717   Gene SNED1, variant not shown         Suspected internal deletion, this clone was ignored    
DB306818 caudate nucleus Gene SNED1, variant not shown         This clone was ignored    
DA265414 caudate nucleus Gene SNED1, variant not shown       capped This clone was ignored    
BU186124 epidermoid carcinoma, cell line, salivary gland Gene SNED1, variant not shown         This clone was ignored    
BQ890259 dorsal root ganglia Gene SNED1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ719616 sympathetic trunk Gene SNED1, variant not shown         This clone was ignored    
BQ675103 epidermoid carcinoma, cell line, salivary gland Gene SNED1, variant not shown         This clone was ignored    
BQ674435 epidermoid carcinoma, cell line, salivary gland Gene SNED1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C