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Gene HMCN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
73 supporting clones for gene HMCN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF156100   .a 1 to 12239 5968 to 18207 L2V V3H R46C A160T N273K ... tiling clone,   12240/18207
(67 %)
21 diff
(99.9 %id)
NM_031935.2   .a 1 to 12245 5968 to 18212 L2V V3H RefSeq,   12245/18212
(67 %)
1 diff
(100.0 %id)
DB324927.
matches multiple genes
  .a 293 to 804 512 to 1   tiling clone, also hits gene rasimo 512/512
(100 %)
1 diff
(99.9 %id)
AJ306906 melanoma .a 3149 to 11691 1 to 8543   tiling clone,   8543/8546
(99 %)
6 diff
(100.0 %id)
BF995884 placenta_normal .a 6911 to 7402 496 to 5   tiling clone,   492/496
(99 %)
1 diff
(99.8 %id)
H21884 breast .a 7495 to 7705 1 to 211       211/211
(100 %)
4 diff
(98.2 %id)
FN060970 breast carcinoma .a 7538 to 7633 96 to 1     Submitted on the opposite strand 96/96
(100 %)
1 diff
(99.0 %id)
DB230336 trachea .a 8054 to 8648 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BX505675   .a 8217 to 8895 1 to 680       680/680
(100 %)
4 diff
(99.5 %id)
AV647418.
matches multiple genes
corresponding non cancerous liver tissue .a 8316 to 8703 1 to 388     Submitted on the opposite strand, also hits gene TFP1 388/390
(99 %)
7 diff
(98.3 %id)
DA571988 whole embryo, mainly body .a 8476 to 9185 2 to 709   capped   708/708
(100 %)
4 diff
(99.5 %id)
DB240980 trachea .a 8614 to 9198 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
CN371844 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 8916 to 9637 1 to 722       722/722
(100 %)
3 diff
(99.6 %id)
AA332746 Embryo, 8 weeks .a 9024 to 9311 1 to 289       289/289
(100 %)
3 diff
(99.0 %id)
DA905052   .a 9057 to 9611 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BQ224407 melanotic melanoma, skin .a 9271 to 9799 1 to 538       538/999
(53 %)
18 diff
(98.2 %id)
BF350634 head_neck .a 9366 to 9843 1 to 478       478/510
(93 %)
9 diff
(98.3 %id)
DA444999 tongue, tumor tissue .a 9392 to 9963 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA761190 tongue .a 9514 to 9997 2 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
AK096452 tongue .a 9841 to 12245 1 to 2405   tiling clone, available from FLJ,   2405/2405
(100 %)
1 diff
(100.0 %id)
DA767097 tongue .a 9842 to 10403 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CD511728 Blood vessels - aorta, basilar and artery .a 9998 to 10728 1 to 729       729/729
(100 %)
6 diff
(99.2 %id)
BQ722715 dorsal root ganglia .a 10098 to 10997 1 to 908       908/919
(98 %)
17 diff
(98.2 %id)
CR747146 melanotic melanoma, skin .a 10458 to 10965 12 to 519       508/519
(97 %)
0 diff
(100 %id)
BQ425569 melanotic melanoma, skin .a 10459 to 11311 1 to 859       859/899
(95 %)
12 diff
(98.7 %id)
CN396065 embryonic stem cells, DMSO-treated H9 cellline .a 10468 to 11236 1 to 770       770/770
(100 %)
5 diff
(99.4 %id)
T86312 liver and spleen .a 10647 to 10976 1 to 334       334/404
(82 %)
10 diff
(97.6 %id)
T93939 liver and spleen .a 10647 to 10805 1 to 161       161/206
(78 %)
3 diff
(98.6 %id)
BF694934 muscle (skeletal) .a 10651 to 11304 1 to 641       641/846
(75 %)
10 diff
(98.9 %id)
BE142562 head_neck .a 10671 to 10806 137 to 1     Submitted on the opposite strand 137/148
(92 %)
3 diff
(98.0 %id)
CB963433 Blood vessels - aorta, basilar and artery .a 10699 to 11180 1 to 499       499/944
(52 %)
37 diff
(96.1 %id)
CB999578 Pooled-Skin .a 10982 to 11741 1 to 774       774/774
(100 %)
25 diff
(96.8 %id)
BF357419 head_neck .a 11155 to 11586 436 to 5       432/450
(96 %)
0 diff
(100 %id)
FN127748 breast carcinoma .a 11256 to 11352 97 to 1     Submitted on the opposite strand 97/97
(100 %)
3 diff
(97.0 %id)
TI_154061274   .a 11300 to 12239 1008 to 86   AAA   923/1008
(91 %)
28 diff
(97.3 %id)
AW368397 head_neck .a 11356 to 11932 15 to 593       579/595
(97 %)
22 diff
(96.4 %id)
TI_154097753   .a 11486 to 12239 814 to 61   AAA   754/793
(95 %)
44 diff
(94.5 %id)
CA440856 lung, Metastatic Chondrosarcoma .a 11496 to 12239 760 to 17   AAA   744/744
(100 %)
4 diff
(99.5 %id)
CA420501 Bone, Enchondroma cell line .a 11504 to 12239 754 to 19   AAA   736/736
(100 %)
3 diff
(99.6 %id)
BQ448001 Knee, Osteoarthritic Cartilage .a 11520 to 12239 738 to 19   AAA   720/720
(100 %)
2 diff
(99.8 %id)
BQ006694 Chondrosarcoma, Left Pelvis .a 11533 to 12238 723 to 17   AAA   707/707
(100 %)
4 diff
(99.5 %id)
AA135903 uterus .a 11617 to 11858 28 to 269       242/269
(89 %)
0 diff
(100 %id)
DB325504 tongue .a 11673 to 12245 575 to 1       575/575
(100 %)
4 diff
(99.4 %id)
DB358929 whole embryo, mainly body .a 11678 to 12239 559 to 1       559/560
(99 %)
21 diff
(96.3 %id)
DV460447 cochlea, ear .a 11716 to 11867 1 to 152       152/152
(100 %)
3 diff
(98.1 %id)
DV461073 cochlea, ear .a 11716 to 11867 152 to 1     Submitted on the opposite strand 152/152
(100 %)
0 diff
(100 %id)
BF446673 carcinoid, lung .a 11734 to 12239 547 to 42   AAA   506/506
(100 %)
2 diff
(99.7 %id)
BQ003095 Chondrosarcoma, Left Pelvis .a 11738 to 12239 519 to 17   AAA   503/503
(100 %)
10 diff
(98.1 %id)
AA379823 skin .a 11744 to 12004 1 to 261       261/261
(100 %)
1 diff
(99.7 %id)
AI681770 carcinoid, lung .a 11744 to 12238 496 to 1       496/496
(100 %)
2 diff
(99.6 %id)
BE043096 carcinoid, lung .a 11751 to 12238 488 to 1       488/489
(99 %)
1 diff
(99.8 %id)
DB575856 hypothalamus .a 11757 to 12238 1 to 482     Submitted on the opposite strand 482/484
(99 %)
3 diff
(99.4 %id)
BE148500 head_neck .a 11759 to 12163 22 to 428       407/428
(95 %)
0 diff
(100 %id)
AI679767 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 11778 to 12212 435 to 1       435/435
(100 %)
2 diff
(99.6 %id)
AI298034 carcinoid, lung .a 11816 to 12238 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
BX093180 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 11822 to 12212 405 to 15   AAA   391/391
(100 %)
2 diff
(99.5 %id)
DB556746 hypothalamus .a 11827 to 12238 1 to 411     Submitted on the opposite strand 411/413
(99 %)
4 diff
(99.1 %id)
BE328248 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 11872 to 12258 386 to 1   tiling clone,   386/386
(100 %)
2 diff
(99.5 %id)
BG149239 carcinoid, lung .a 11906 to 12241 338 to 2       337/338
(99 %)
0 diff
(100 %id)
BG676442 skin, squamous cell carcinoma .a 12001 to 12118 827 to 945       889/945
(94 %)
49 diff
(94.9 %id)
D62730   .a 12025 to 12239 1 to 215       215/215
(100 %)
0 diff
(100 %id)
AL833232 melanoma (MeWo cell line) .b 1 to 4804 1 to 4804 Q163R tiling clone, available from DKFZ, AAA   4804/4804
(100 %)
2 diff
(100.0 %id)
AK027344 whole embryo, mainly body .b 1391 to 4804 1 to 3414   available from FLJ,   3414/3414
(100 %)
3 diff
(100.0 %id)
BG714827 brain, hypothalamus .b 2802 to 3522 1 to 723       723/723
(100 %)
15 diff
(98.0 %id)
DB487398 hypothalamus .b 2807 to 3238 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
DB504613 hypothalamus .b 2807 to 3267 1 to 461       461/461
(100 %)
2 diff
(99.6 %id)
BE142547 head_neck .b 3063 to 3370 338 to 35     Submitted on the opposite strand 304/338
(89 %)
0 diff
(100 %id)
CD356880 Blood vessels - aorta, basilar and artery .b 3075 to 3772 1 to 713       713/769
(92 %)
34 diff
(95.6 %id)
DA591860 lung .c 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
DB225361 trachea .c 398 to 943 2 to 548   tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
CD298627 Blood vessels - aorta, basilar and artery .c 640 to 1152 1 to 514   tiling clone,   514/798
(64 %)
5 diff
(99.4 %id)
DB349651 trachea .c 3195 to 3751 559 to 1   tiling clone,   559/559
(100 %)
3 diff
(99.5 %id)
BF754372 colon .d 1 to 389 26 to 414 F12L D14G Q17H G113W Y114L ... tiling clone,   389/414
(93 %)
2 diff
(99.6 %id)
DB083764 testis .e 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
BF358230 lung_normal .f-u 1 to 426 428 to 4 F82L W86* tiling clone,   425/428
(99 %)
12 diff
(97.2 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC