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Gene FGD4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
209 supporting clones for gene FGD4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP350396 brain FGD4.a 1 to 580 4 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA657803   FGD4.a 1 to 326 2 to 327   tiling clone, capped   326/326
(100 %)
0 diff
(100 %id)
AK303334 thymus FGD4.a 29 to 2955 1 to 2927 L471P tiling clone,   2927/2927
(100 %)
2 diff
(100.0 %id)
DB442712 testis FGD4.a 29 to 475 1 to 447       447/456
(98 %)
5 diff
(99.0 %id)
DC366731   FGD4.a 29 to 279 1 to 251       251/251
(100 %)
0 diff
(100 %id)
DC408004 thymus FGD4.a 29 to 583 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
DC355933   FGD4.a 31 to 324 1 to 294       294/294
(100 %)
0 diff
(100 %id)
DB321835   FGD4.a 1807 to 2331 525 to 1       525/525
(100 %)
1 diff
(99.9 %id)
AK297025 cord Blood FGD4.b 1 to 2924 1 to 2924 exact tiling clone,   2924/2924
(100 %)
0 diff
(100 %id)
DC297001   FGD4.b 1 to 571 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC428617   FGD4.b 1 to 567 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC428776   FGD4.b 1 to 589 1 to 589       589/589
(100 %)
0 diff
(100 %id)
CD636779   FGD4.b 324 to 976 10 to 665       656/665
(98 %)
8 diff
(98.8 %id)
U25921   FGD4.b 376 to 601 225 to 1       225/225
(100 %)
2 diff
(99.2 %id)
CD636780   FGD4.b 483 to 1249 764 to 1       764/764
(100 %)
9 diff
(98.9 %id)
BF378841 uterus FGD4.b 633 to 948 1 to 316       316/316
(100 %)
3 diff
(99.1 %id)
CU450451 epidermis FGD4.b 668 to 1154 486 to 1     Submitted on the opposite strand 486/489
(99 %)
10 diff
(98.0 %id)
AA305646 colon FGD4.b 774 to 1165 8 to 399       392/399
(98 %)
5 diff
(98.8 %id)
BF174740 blood FGD4.b 1274 to 1472 1 to 201       201/201
(100 %)
16 diff
(92.1 %id)
BF955705 nervous_normal FGD4.b 1380 to 1745 13 to 378       366/378
(96 %)
6 diff
(98.5 %id)
BF955704 nervous_normal FGD4.b 1382 to 1743 365 to 4       362/365
(99 %)
0 diff
(100 %id)
CN347011 embryonic stem cells, cell lines H1, H7, andH9 FGD4.b 1413 to 1766 1 to 354       354/354
(100 %)
0 diff
(100 %id)
CB124491 Liver FGD4.b 1608 to 2285 1 to 678       678/678
(100 %)
0 diff
(100 %id)
AI453760 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FGD4.b 1756 to 2293 537 to 1       537/537
(100 %)
6 diff
(98.9 %id)
EH345130   FGD4.b 1767 to 1824 13 to 70       58/70
(82 %)
6 diff
(91.5 %id)
BP339119 Spleen FGD4.b 2032 to 2610 1 to 580       580/583
(99 %)
9 diff
(98.5 %id)
BU158065 ductal carcinoma, cell line, Pancreas FGD4.b 2069 to 2841 1 to 775       775/911
(85 %)
12 diff
(98.7 %id)
BU607846 Human Lung Epithelial cells, lung FGD4.b 2138 to 2647 19 to 528     Submitted on the opposite strand 510/511
(99 %)
1 diff
(99.9 %id)
CD636781   FGD4.b 2144 to 2792 17 to 665       649/665
(97 %)
6 diff
(99.1 %id)
CD636782   FGD4.b 2144 to 2797 673 to 20       654/690
(94 %)
0 diff
(100 %id)
CF144903 CNCAP(3)T-225 cell line, Prostate FGD4.b 2147 to 2598 8 to 459       452/459
(98 %)
6 diff
(98.7 %id)
TI_154177006   FGD4.b 2147 to 2701 78 to 640       563/1003
(56 %)
20 diff
(98.1 %id)
FN053916 breast carcinoma FGD4.b 2223 to 2289 70 to 3     Submitted on the opposite strand 68/70
(97 %)
0 diff
(100 %id)
NM_139241.2   FGD4.c 1 to 8293 1 to 8293   RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 8293/8293
(100 %)
0 diff
(100 %id)
BG721907 testis FGD4.c 4 to 653 1 to 649   tiling clone,   649/649
(100 %)
6 diff
(99.1 %id)
BI561876 testis FGD4.c 23 to 812 1 to 812   tiling clone,   812/1050
(77 %)
45 diff
(95.8 %id)
TI_44350408   FGD4.c 28 to 812 127 to 933       807/1171
(68 %)
46 diff
(96.1 %id)
DB081970 testis FGD4.c 29 to 499 2 to 473   capped   472/472
(100 %)
2 diff
(99.6 %id)
DB459900 testis FGD4.c 31 to 479 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
DB026304 testis FGD4.c 44 to 475 2 to 433   capped   432/439
(98 %)
1 diff
(99.8 %id)
DB085349 testis FGD4.c 44 to 594 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB442172 testis FGD4.c 46 to 478 1 to 435       435/435
(100 %)
5 diff
(98.9 %id)
BP199980 amygdala FGD4.c 53 to 633 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AK057294 testis FGD4.c 54 to 2984 1 to 2931 T79A tiling clone, available from FLJ,   2931/2931
(100 %)
4 diff
(99.9 %id)
DB093855 testis FGD4.c 54 to 609 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB098157 testis FGD4.c 55 to 639 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BP217860 caudate nucleus FGD4.c 57 to 640 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DB038477 testis FGD4.c 58 to 624 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BG719092 testis FGD4.c 59 to 721 1 to 664       664/664
(100 %)
10 diff
(98.5 %id)
DB446508 testis FGD4.c 65 to 515 1 to 448       448/448
(100 %)
8 diff
(98.3 %id)
DB455932 testis FGD4.c 65 to 562 1 to 498       498/498
(100 %)
0 diff
(100 %id)
DA531737 brain FGD4.c 71 to 670 2 to 601   capped   600/600
(100 %)
1 diff
(99.9 %id)
DR002252 fetal brain FGD4.c 79 to 773 1 to 695   tiling clone,   695/695
(100 %)
5 diff
(99.3 %id)
DA294494 hippocampus FGD4.c 81 to 658 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA504900 brain FGD4.c 81 to 661 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB042915 testis FGD4.c 93 to 653 2 to 562   capped   561/563
(99 %)
2 diff
(99.7 %id)
CN347012 embryonic stem cells, DMSO-treated H9 cellline FGD4.c 124 to 528 1 to 405       405/405
(100 %)
0 diff
(100 %id)
AL832064 human adipose FGD4.c 1107 to 8293 1 to 7185   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 7185/7185
(100 %)
7 diff
(100.0 %id)
BP250972 hippocampus FGD4.c 2242 to 2823 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM698877 eye, fetal eyes FGD4.c 2242 to 2716 1 to 475       475/475
(100 %)
0 diff
(100 %id)
AW083007 colon, moderately differentiated adenocarcinoma FGD4.c 2365 to 2984 738 to 105   AAA   634/641
(98 %)
3 diff
(99.6 %id)
AW084116 colon, moderately differentiated adenocarcinoma FGD4.c 2372 to 2988 622 to 6       617/653
(94 %)
5 diff
(99.3 %id)
AW276980 ovary, papillary serous ovarian metastasis FGD4.c 2375 to 2757 34 to 416     Submitted on the opposite strand 383/416
(92 %)
9 diff
(97.9 %id)
BQ695153 adipose FGD4.c 2420 to 3035 1 to 615       615/619
(99 %)
13 diff
(97.9 %id)
AA412618   FGD4.c 2420 to 2717 1 to 298   fully sequenced,   298/298
(100 %)
0 diff
(100 %id)
CR736971   FGD4.c 2421 to 2984 1 to 564   AAA   564/564
(100 %)
0 diff
(100 %id)
DB507087 testis FGD4.c 2430 to 2908 1 to 479     Submitted on the opposite strand 479/479
(100 %)
10 diff
(98.0 %id)
DB516838 testis FGD4.c 2433 to 2894 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
DB525344 testis FGD4.c 2455 to 2894 1 to 440     Submitted on the opposite strand 440/440
(100 %)
1 diff
(99.8 %id)
BF951018 nervous_normal FGD4.c 2535 to 3130 1 to 595       595/597
(99 %)
18 diff
(97.0 %id)
AW196340 pooled germ cell tumors FGD4.c 2613 to 2992 398 to 16   AAA   383/432
(88 %)
5 diff
(98.9 %id)
AA516262 colon FGD4.c 2637 to 2984 348 to 1       348/348
(100 %)
0 diff
(100 %id)
AA952969 pooled FGD4.c 2638 to 2984 347 to 1       347/347
(100 %)
0 diff
(100 %id)
CR739939 pooled FGD4.c 2656 to 3188 1 to 533       533/534
(99 %)
1 diff
(99.9 %id)
AA412504   FGD4.c 2687 to 2988 302 to 1   fully sequenced,   302/302
(100 %)
0 diff
(100 %id)
AI478774 pooled FGD4.c 2689 to 2988 301 to 2       300/301
(99 %)
0 diff
(100 %id)
DB507603 testis FGD4.c 3019 to 3423 1 to 405     Submitted on the opposite strand 405/405
(100 %)
3 diff
(99.3 %id)
BE568717 bladder, carcinoma, cell line FGD4.c 3065 to 3679 1 to 609       609/609
(100 %)
13 diff
(97.9 %id)
BX497193 Liver FGD4.c 3098 to 3564 1 to 467       467/467
(100 %)
7 diff
(98.6 %id)
BM669663 eye, fetal eyes FGD4.c 3173 to 3700 547 to 19   AAA   529/529
(100 %)
2 diff
(99.7 %id)
DB218232 trachea FGD4.c 3449 to 3813 2 to 366   capped   365/365
(100 %)
1 diff
(99.8 %id)
DA228317 brain FGD4.c 3463 to 4017 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA245511 brain FGD4.c 3637 to 4231 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
AL599409   FGD4.c 3643 to 3936 1 to 295       295/295
(100 %)
4 diff
(98.7 %id)
AI222351 pooled FGD4.c 3757 to 4179 424 to 2       423/424
(99 %)
0 diff
(100 %id)
AV728753 hypothalamus FGD4.c 3759 to 4178 1 to 420   AAA   420/420
(100 %)
1 diff
(99.8 %id)
AI915870 Kidney FGD4.c 3871 to 4185 315 to 1       315/315
(100 %)
4 diff
(98.8 %id)
BE817852 breast_normal FGD4.c 4069 to 4452 396 to 13       384/398
(96 %)
0 diff
(100 %id)
DA805444 brain FGD4.c 4096 to 4667 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
AA214203   FGD4.c 4110 to 4617 1 to 509     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 509/512
(99 %)
4 diff
(99.3 %id)
DA375521 thalamus FGD4.c 4205 to 4661 2 to 458   capped   457/457
(100 %)
2 diff
(99.6 %id)
AA296351 umbilical vein FGD4.c 4212 to 4549 1 to 340       340/340
(100 %)
5 diff
(98.6 %id)
DA290638 hippocampus FGD4.c 4592 to 5167 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
CD652748 Embryonic Stem cells FGD4.c 4630 to 5351 58 to 775   tiling clone,   718/818
(87 %)
7 diff
(99.2 %id)
CB105094 Ascites, stomach FGD4.c 4719 to 5126 1 to 408       408/408
(100 %)
3 diff
(99.3 %id)
DB176759 kidney, tumor tissue FGD4.c 4904 to 5457 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AK124654 amygdala FGD4.c 4945 to 7724 1 to 2775   tiling clone, available from FLJ,   2775/2775
(100 %)
6 diff
(99.8 %id)
DA160054 amygdala FGD4.c 4946 to 5523 2 to 579   capped   578/579
(99 %)
2 diff
(99.7 %id)
DA245613 brain FGD4.c 4975 to 5573 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DA798905 brain FGD4.c 4991 to 5533 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA798957 brain FGD4.c 4991 to 5546 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CN354139 embryonic stem cells, cell lines H1, H7, andH9 FGD4.c 5244 to 5846 1 to 605       605/605
(100 %)
5 diff
(99.2 %id)
DA737455   FGD4.c 5351 to 6106 2 to 759   capped   758/760
(99 %)
7 diff
(99.1 %id)
BM728469 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid FGD4.c 5465 to 6113 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
CB162006 Liver FGD4.c 5501 to 6053 1 to 553       553/553
(100 %)
0 diff
(100 %id)
AV750056 Pituitary FGD4.c 5803 to 6074 1 to 262       262/264
(99 %)
9 diff
(96.6 %id)
CV572523 cornea, eye FGD4.c 5984 to 6625 1 to 642       642/642
(100 %)
2 diff
(99.7 %id)
AK091689 brain FGD4.c 6037 to 8293 1 to 2257   tiling clone, available from FLJ,   2257/2257
(100 %)
3 diff
(99.9 %id)
DA525616 brain FGD4.c 6038 to 6600 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BF673307 Prostate FGD4.c 6083 to 6726 1 to 632       632/848
(74 %)
26 diff
(97.0 %id)
BU852468 testis FGD4.c 6132 to 6844 1 to 720       720/782
(92 %)
18 diff
(97.7 %id)
BM788332 stomach FGD4.c 6145 to 6812 1 to 668       668/668
(100 %)
0 diff
(100 %id)
BE972382 testis FGD4.c 6194 to 6635 1 to 442       442/443
(99 %)
1 diff
(99.8 %id)
AI263488 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus FGD4.c 6319 to 6761 443 to 1       443/443
(100 %)
0 diff
(100 %id)
DB311128 thalamus FGD4.c 6329 to 6860 532 to 1       532/532
(100 %)
0 diff
(100 %id)
BU742508 eye, fetal eye FGD4.c 6422 to 7133 730 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 712/712
(100 %)
0 diff
(100 %id)
BX644392   FGD4.c 6522 to 6860 7 to 346       340/346
(98 %)
6 diff
(98.3 %id)
BU753383 placenta FGD4.c 6565 to 7133 585 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 568/568
(100 %)
3 diff
(99.5 %id)
DB349246 trachea FGD4.c 6570 to 7133 564 to 1       564/564
(100 %)
0 diff
(100 %id)
AW975159   FGD4.c 6589 to 7152 669 to 107     Submitted on the opposite strand 563/669
(84 %)
0 diff
(100 %id)
AI949549 2 pooled tumors (clear cell type), Kidney FGD4.c 6625 to 7119 510 to 15       496/514
(96 %)
0 diff
(100 %id)
AW271233 Kidney FGD4.c 6627 to 7131 507 to 3       505/507
(99 %)
0 diff
(100 %id)
AA665208 alveolar rhabdomyosarcoma FGD4.c 6628 to 7096 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AI824076 2 pooled tumors (clear cell type), Kidney FGD4.c 6629 to 7136 508 to 1       508/508
(100 %)
0 diff
(100 %id)
AI770022 2 pooled tumors (clear cell type), Kidney FGD4.c 6630 to 7134 505 to 1       505/505
(100 %)
4 diff
(99.3 %id)
N57004 multiple sclerosis lesions FGD4.c 6663 to 7134 474 to 1       474/478
(99 %)
9 diff
(98.2 %id)
BQ022432 placenta FGD4.c 6669 to 7133 481 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 464/464
(100 %)
1 diff
(99.8 %id)
BG165101 hypernephroma, cell line, Kidney FGD4.c 6678 to 7344 9 to 657       649/903
(71 %)
29 diff
(96.8 %id)
AI243612 pooled FGD4.c 6681 to 7136 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
AW119189 pooled FGD4.c 6682 to 7136 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
AI769334 pooled FGD4.c 6683 to 7145 462 to 1       462/462
(100 %)
4 diff
(99.2 %id)
AI033884 parathyroid gland, parathyroid tumor FGD4.c 6694 to 7139 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
AA884268 pooled FGD4.c 6696 to 7135 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
BX104161 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors FGD4.c 6703 to 7147 445 to 1     Submitted on the opposite strand 445/445
(100 %)
0 diff
(100 %id)
AW005825 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FGD4.c 6721 to 7133 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AI371230 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors FGD4.c 6784 to 7133 377 to 29   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 349/349
(100 %)
1 diff
(99.8 %id)
T47694 fetal spleen, Spleen FGD4.c 6803 to 7084 286 to 1       286/294
(97 %)
4 diff
(98.7 %id)
AI473214 Kidney FGD4.c 6832 to 7133 302 to 1       302/302
(100 %)
0 diff
(100 %id)
AL599410   FGD4.c 6877 to 7153 285 to 10       276/285
(96 %)
0 diff
(100 %id)
AA214157   FGD4.c 6959 to 7133 196 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 179/188
(95 %)
3 diff
(98.5 %id)
DB302101 amygdala FGD4.c 7159 to 7724 568 to 1       568/568
(100 %)
4 diff
(99.3 %id)
DB370059   FGD4.c 7678 to 8293 606 to 1       606/611
(99 %)
24 diff
(96.1 %id)
DB317441 brain FGD4.c 7754 to 8293 541 to 1       541/541
(100 %)
2 diff
(99.7 %id)
BC045552 testis FGD4.d 1 to 2684 8 to 2691 Q192R tiling clone, available from MGC, AAA   2691/2691
(100 %)
8 diff
(99.8 %id)
DB511730 testis FGD4.d 2276 to 2684 1 to 408     Submitted on the opposite strand 408/408
(100 %)
3 diff
(99.3 %id)
BC096746 testis FGD4.e 1 to 2986 1 to 2986 T125A K324R tiling clone, AAA   2986/2986
(100 %)
2 diff
(100.0 %id)
DB020814 testis FGD4.e 29 to 583 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB335856 testis FGD4.e 2563 to 3076 514 to 1   tiling clone,   514/514
(100 %)
0 diff
(100 %id)
AY367054 testis FGD4.f 1 to 2349 1 to 2349 V55A tiling clone,   2349/2359
(99 %)
4 diff
(99.9 %id)
TI_57216556   FGD4.g 1 to 874 30 to 895   tiling clone,   866/921
(94 %)
18 diff
(98.1 %id)
BC039708 Brain, adult, 6 pooled whole brains FGD4.g 5 to 1631 1 to 1627 exact tiling clone, available from MGC, AAA   1627/1627
(100 %)
0 diff
(100 %id)
BI756188 brain FGD4.g 5 to 874 1 to 862   available from MGC,   862/888
(97 %)
12 diff
(98.7 %id)
DB446722 testis FGD4.g 68 to 494 1 to 427       427/427
(100 %)
10 diff
(97.7 %id)
FN175494 breast carcinoma FGD4.g 1506 to 1618 1 to 110       110/110
(100 %)
5 diff
(95.5 %id)
BU930298 Prostate FGD4.h-u 1 to 754 1 to 754 exact tiling clone,   754/754
(100 %)
5 diff
(99.4 %id)
BF326810 breast_normal FGD4.h-u 40 to 474 8 to 440       433/440
(98 %)
6 diff
(98.7 %id)
CV575599 cornea, eye FGD4.h-u 75 to 714 1 to 640       640/640
(100 %)
1 diff
(99.9 %id)
BP333264 salivary gland FGD4.h-u 381 to 961 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BF815226 colon_ins FGD4.h-u 544 to 1056 515 to 3   tiling clone, Submitted on the opposite strand 513/528
(97 %)
0 diff
(100 %id)
AW339034 adenocarcinoma, Pancreas FGD4.h-u 555 to 1039 486 to 2   tiling clone,   485/486
(99 %)
0 diff
(100 %id)
W93897 heart FGD4.i 1 to 334 1 to 340   tiling clone, fully sequenced,   340/340
(100 %)
4 diff
(98.9 %id)
W93857 heart FGD4.i 302 to 776 476 to 1   tiling clone, fully sequenced,   476/476
(100 %)
1 diff
(99.8 %id)
AI276233 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus FGD4.i 327 to 775 449 to 1   tiling clone,   449/449
(100 %)
1 diff
(99.8 %id)
DB080368 testis FGD4.j 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB076788 testis FGD4.j 40 to 598 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
BP231574 muscle FGD4.k 1 to 583 1 to 583 A75G tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
DA828617 placenta FGD4.l-u 1 to 745 2 to 757   tiling clone, to resequence, capped   756/785
(96 %)
24 diff
(97.0 %id)
BU785213 Pancreas, Purified pancreatic islet FGD4.l-u 1070 to 1345 24 to 299   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 276/299
(92 %)
10 diff
(96.7 %id)
BM126495 Islets of Langerhans, Pancreas FGD4.l-u 1088 to 1349 1 to 262   fully sequenced,   262/262
(100 %)
3 diff
(98.9 %id)
AA429970   FGD4.l-u 1166 to 1343 1 to 178       178/178
(100 %)
1 diff
(99.5 %id)
BE940405 uterus_tumor FGD4.l-u 1199 to 1599 1 to 403 I37N     403/424
(95 %)
29 diff
(93.2 %id)
BM126191 Islets of Langerhans, Pancreas FGD4.l-u 1209 to 1345 137 to 1   fully sequenced,   137/137
(100 %)
2 diff
(98.6 %id)
CD518022 White Matter FGD4.l-u 1219 to 2010 1 to 808 I37K     808/862
(93 %)
30 diff
(96.6 %id)
CD559087 White Matter FGD4.l-u 1219 to 1960 1 to 750 F10L F11V I37K     750/857
(87 %)
12 diff
(98.6 %id)
CV812637 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass FGD4.l-u 1270 to 2054 1 to 789   tiling clone,   789/888
(88 %)
29 diff
(96.8 %id)
Z43529.
matches multiple genes
brain, total brain FGD4.l-u 1351 to 1719 1 to 369     also hits gene ZNF529 369/369
(100 %)
1 diff
(99.8 %id)
F06610.
matches multiple genes
brain, total brain FGD4.l-u 1351 to 1672 1 to 322     also hits gene ZNF529 322/322
(100 %)
1 diff
(99.7 %id)
BE175602 head_neck FGD4.l-u 1352 to 1704 370 to 18     Submitted on the opposite strand 353/370
(95 %)
0 diff
(100 %id)
BE175605 head_neck FGD4.l-u 1352 to 1704 359 to 7     Submitted on the opposite strand 353/360
(98 %)
0 diff
(100 %id)
CN354140 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 FGD4.l-u 1375 to 1969 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
BM695793 eye, human retina FGD4.l-u 1397 to 1761 1 to 365     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 365/365
(100 %)
1 diff
(99.8 %id)
AV661027 corresponding non cancerous liver tissue FGD4.l-u 1399 to 1805 1 to 406     Submitted on the opposite strand 406/406
(100 %)
5 diff
(98.8 %id)
CK821342 Pancreas, Purified pancreatic islet FGD4.l-u 1435 to 1712 20 to 297     Submitted on the opposite strand 278/297
(93 %)
8 diff
(97.4 %id)
BM314620 Pancreas, Purified pancreatic islet FGD4.l-u 1451 to 1979 1 to 529   tiling clone,   529/529
(100 %)
0 diff
(100 %id)
CK004810 brain/CNS, Human Brain - Frontal Cortex FGD4.l-u 1598 to 2246 1 to 647       647/651
(99 %)
10 diff
(98.5 %id)
TI_154102922   FGD4.l-u 1660 to 2505 902 to 62   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 841/1003
(83 %)
8 diff
(99.3 %id)
CA748516 Alveolar Macrophage, lung FGD4.l-u 1764 to 2505 760 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 742/742
(100 %)
1 diff
(99.9 %id)
CA445753 Chondrosarcoma, Left Pubic Bone FGD4.l-u 1785 to 2505 739 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 721/721
(100 %)
1 diff
(99.9 %id)
CA309283 Alveolar Macrophage, lung FGD4.l-u 1785 to 2505 739 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 721/721
(100 %)
4 diff
(99.5 %id)
CA425284 Bone, Subchondral Bone FGD4.l-u 1875 to 2505 649 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 631/631
(100 %)
2 diff
(99.7 %id)
BU736417 eye, human retina FGD4.l-u 1911 to 2505 608 to 14   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 595/595
(100 %)
3 diff
(99.5 %id)
BU078814 Pancreas, Purified pancreatic islet FGD4.l-u 1935 to 2507 573 to 1   tiling clone,   573/573
(100 %)
1 diff
(99.9 %id)
CK821343 Pancreas, Purified pancreatic islet FGD4.l-u 1936 to 2507 572 to 1     Submitted on the opposite strand 572/572
(100 %)
2 diff
(99.7 %id)
DB373189 placenta FGD4.l-u 1961 to 2511 549 to 1   tiling clone, to resequence,   549/588
(93 %)
20 diff
(96.6 %id)
AI277617 placenta FGD4.l-u 2039 to 2507 473 to 5       469/473
(99 %)
0 diff
(100 %id)
AI887540 serous papillary carcinoma, high grade, 2pooled tumors, uterus FGD4.l-u 2052 to 2506 455 to 1       455/455
(100 %)
0 diff
(100 %id)
BX114476 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FGD4.l-u 2058 to 2505 462 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 448/448
(100 %)
3 diff
(99.4 %id)
BM314311 Pancreas, Purified pancreatic islet FGD4.l-u 2061 to 2504 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
AW189352 serous papillary carcinoma, high grade, 2pooled tumors, uterus FGD4.l-u 2092 to 2505 415 to 1       415/415
(100 %)
4 diff
(99.1 %id)
AI886476 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FGD4.l-u 2122 to 2507 391 to 5       387/391
(98 %)
0 diff
(100 %id)
AA844129 parathyroid gland, parathyroid tumor FGD4.l-u 2146 to 2507 366 to 5       362/366
(98 %)
0 diff
(100 %id)
AI913846 colon FGD4.l-u 2146 to 2505 361 to 1       361/361
(100 %)
1 diff
(99.8 %id)
BG655529 Pancreas, Purified pancreatic islet FGD4.l-u 2191 to 2514 328 to 5     Submitted on the opposite strand 324/328
(98 %)
0 diff
(100 %id)
AW243386 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney FGD4.l-u 2193 to 2506 317 to 1       317/317
(100 %)
3 diff
(99.1 %id)
AI251842 brain, tumor, 5 pooled (see description) FGD4.l-u 2206 to 2506 301 to 1       301/301
(100 %)
0 diff
(100 %id)
AI933640 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FGD4.l-u 2220 to 2507 288 to 1       288/288
(100 %)
0 diff
(100 %id)
BC063403 Brain, adult, 6 pooled whole brains FGD4.m 1 to 1437 1 to 1437 exact tiling clone, available from MGC, AAA   1437/1437
(100 %)
1 diff
(100.0 %id)
BI752085 brain FGD4.m 1 to 845 1 to 846 exact available from MGC,   846/850
(99 %)
9 diff
(99.0 %id)
TI_57215183   FGD4.m 1 to 845 71 to 916 exact     846/920
(91 %)
15 diff
(98.4 %id)
BP201441 amygdala FGD4.m 104 to 683 1 to 582 exact     582/582
(100 %)
2 diff
(99.7 %id)
DB018643 esophageal, tumor tissue FGD4.m 288 to 735 102 to 551   capped   450/550
(81 %)
8 diff
(98.6 %id)
CD652836 Embryonic Stem cells FGD4.n-u 1 to 786 1 to 784 L2V A4L P5H V7* tiling clone,   784/794
(98 %)
16 diff
(98.0 %id)
BP222052   FGD4.o 1 to 580 1 to 581 exact tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
DB073208 testis FGD4.p 1 to 536 2 to 537 exact tiling clone, capped   536/536
(100 %)
0 diff
(100 %id)
DB088826 testis FGD4.q 1 to 534 2 to 535 exact tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
BF510975   FGD4.r-u 1 to 523 540 to 18 exact tiling clone, AAA   523/523
(100 %)
0 diff
(100 %id)
AA921849 pooled FGD4.r-u 2 to 523 536 to 15 exact AAA   522/522
(100 %)
0 diff
(100 %id)
BG003659 placenta_normal FGD4.s-u 1 to 319 15 to 333 exact tiling clone,   319/333
(95 %)
6 diff
(98.2 %id)
AV726431 hypothalamus Gene FGD4, variant not shown         Suspected internal deletion, this clone was ignored    
AL713762 testis Gene FGD4, variant not shown       available from DKFZ, AAA This clone was ignored    
DB322340   Gene FGD4, variant not shown         This clone was ignored    
DA673999   Gene FGD4, variant not shown       capped This clone was ignored    
N54175 liver and spleen Gene FGD4, variant not shown         This clone was ignored    
CB962766 Blood vessels - aorta, basilar and artery Gene FGD4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l-u, .m, .n-u, .o, .p, .q, .r-u, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI