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Gene FDX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
233 supporting clones for gene FDX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA447505   .a 1 to 481 1 to 478   tiling clone,   478/481
(99 %)
8 diff
(98.4 %id)
NM_004109.3   .a 173 to 3390 1 to 3218   RefSeq, AAA   3218/3218
(100 %)
0 diff
(100 %id)
DB500550 hypothalamus .a 184 to 656 1 to 471   tiling clone,   471/471
(100 %)
5 diff
(99.0 %id)
BI912203 leukocyte .a 234 to 830 7 to 607       601/726
(82 %)
22 diff
(97.0 %id)
TI_57235856   .a 234 to 830 7 to 607       601/726
(82 %)
22 diff
(97.0 %id)
DB459133 testis .a 240 to 718 1 to 480       480/480
(100 %)
2 diff
(99.6 %id)
CR598979 Neuroblastoma Cot 25-normalized .a 242 to 1075 1 to 834       834/834
(100 %)
0 diff
(100 %id)
CR607314 T cells (Jurkat cell line) Cot10-normalized .a 242 to 1737 1 to 1496       1496/1496
(100 %)
0 diff
(100 %id)
CN333247 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 243 to 832 1 to 591       591/591
(100 %)
6 diff
(99.0 %id)
CR992834 T-Lymphocytes .a 243 to 829 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BQ685101 ductal carcinoma, cell line, Pancreas .a 247 to 1069 1 to 828       828/895
(92 %)
17 diff
(98.2 %id)
TI_57198695   .a 248 to 963 26 to 741       716/741
(96 %)
6 diff
(99.2 %id)
TI_57153094   .a 248 to 1119 31 to 912       882/913
(96 %)
34 diff
(96.3 %id)
AW163820 brain, frontal lobe .a 251 to 735 1 to 484       484/495
(97 %)
4 diff
(99.2 %id)
CR611214 placenta .a 252 to 1696 1 to 1445       1445/1445
(100 %)
0 diff
(100 %id)
AL542796 placenta .a 252 to 894 1 to 643   fully sequenced,   643/643
(100 %)
0 diff
(100 %id)
BI765196 pooled colon, kidney, stomach .a 252 to 1119 1 to 878       878/879
(99 %)
29 diff
(96.8 %id)
CB994327 placenta, pre-eclamptic placenta .a 252 to 734 17 to 505   AAA   489/885
(55 %)
22 diff
(97.6 %id)
CB992223 placenta, pre-eclamptic placenta .a 252 to 743 17 to 509       493/902
(54 %)
13 diff
(98.6 %id)
BM714049 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 252 to 686 1 to 435   fully sequenced,   435/435
(100 %)
0 diff
(100 %id)
BI822600 pooled brain, lung, testis .a 253 to 963 1 to 711       711/711
(100 %)
0 diff
(100 %id)
CR626036 Placenta Cot 25-normalized .a 254 to 1955 1 to 1702       1702/1702
(100 %)
0 diff
(100 %id)
BX383700   .a 254 to 1133 11 to 890       880/890
(98 %)
6 diff
(99.4 %id)
CR988754 T-Lymphocytes .a 255 to 534 1 to 280       280/280
(100 %)
0 diff
(100 %id)
AL526010 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 261 to 1075 16 to 830   fully sequenced,   815/830
(98 %)
18 diff
(97.9 %id)
BE018473 cervix .a 264 to 734 3 to 474       472/492
(95 %)
26 diff
(94.8 %id)
AL553091 placenta, Placenta Cot 25-normalized .a 268 to 1204 12 to 939   fully sequenced,   928/939
(98 %)
6 diff
(99.4 %id)
DN990819 brain, whole brain .a 268 to 807 9 to 547       539/547
(98 %)
6 diff
(99.0 %id)
BI911199 leukocyte .a 269 to 984 32 to 749       718/749
(95 %)
11 diff
(98.6 %id)
TI_57231924   .a 269 to 984 32 to 749       718/749
(95 %)
11 diff
(98.6 %id)
CN333248 embryonic stem cells, DMSO-treated H9 cellline .a 270 to 761 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
BP420965 small intestine .a 270 to 765 1 to 496     Submitted on the opposite strand 496/496
(100 %)
1 diff
(99.8 %id)
BC010284 Placenta, choriocarcinoma .a 271 to 3390 1 to 3120   tiling clone, available from MGC, AAA   3120/3120
(100 %)
1 diff
(100.0 %id)
BE785266 large cell carcinoma, lung .a 272 to 998 1 to 731       733/731
(100 %)
22 diff
(97.0 %id)
BI601429 brain, hypothalamus .a 275 to 1026 1 to 750       755/809
(93 %)
18 diff
(97.8 %id)
CA489098   .a 277 to 1038 1 to 765       765/903
(84 %)
19 diff
(97.9 %id)
TI_45214001   .a 281 to 1026 141 to 884       749/943
(79 %)
19 diff
(98.0 %id)
BC017063 Lung, large cell carcinoma .a 290 to 1583 1 to 1294   available from MGC, AAA   1294/1294
(100 %)
0 diff
(100 %id)
J03548 adrenal .a 291 to 1758 1 to 1463       1463/1463
(100 %)
26 diff
(98.3 %id)
BX356421 Placenta Cot 25-normalized .a 304 to 1335 1 to 1024       1024/1043
(98 %)
23 diff
(97.8 %id)
CR620794 fetal brain .a 311 to 1567 1 to 1257       1257/1257
(100 %)
0 diff
(100 %id)
BX460783 brain, fetal brain .a 311 to 1199 1 to 885       885/945
(93 %)
47 diff
(95.1 %id)
BM352146 Pancreas, Purified pancreatic islet .a 330 to 752 1 to 423       423/436
(97 %)
11 diff
(97.5 %id)
TI_57186063   .a 334 to 988 45 to 697       653/653
(100 %)
2 diff
(99.7 %id)
BI856202 breast, mammary adenocarcinoma, cell line .a 336 to 988 1 to 651       651/651
(100 %)
2 diff
(99.7 %id)
CN333245 embryonic stem cells, DMSO-treated H9 cellline .a 378 to 915 1 to 538       538/538
(100 %)
6 diff
(98.9 %id)
AB096243 Liver .a 397 to 1223 1 to 827       827/827
(100 %)
4 diff
(99.6 %id)
M18003 placenta .a 397 to 1223 1 to 827       827/827
(100 %)
4 diff
(99.6 %id)
TI_227712906   .a 397 to 1210 896 to 86   AAA   811/969
(83 %)
13 diff
(98.7 %id)
M34788   .a 406 to 1579 1 to 1174       1174/1174
(100 %)
2 diff
(99.9 %id)
BG704607 brain, hippocampus .a 412 to 1206 1 to 798       798/798
(100 %)
15 diff
(98.2 %id)
TI_153957035   .a 412 to 1036 77 to 704       628/963
(65 %)
39 diff
(96.0 %id)
CD672343 eye, Iris .a 417 to 969 1 to 553       553/553
(100 %)
0 diff
(100 %id)
BX383187   .a 419 to 1175 754 to 6       749/754
(99 %)
14 diff
(98.2 %id)
DB482150 hippocampus .a 423 to 900 1 to 478       478/478
(100 %)
0 diff
(100 %id)
BT006681   .a 424 to 976 1 to 553       553/555
(99 %)
1 diff
(99.9 %id)
BI668260 brain, hypothalamus .a 464 to 1372 1 to 910       910/913
(99 %)
38 diff
(95.9 %id)
DB484926 hypothalamus .a 468 to 919 1 to 456       456/456
(100 %)
13 diff
(97.2 %id)
DB502840 hypothalamus .a 468 to 965 1 to 492       495/502
(98 %)
26 diff
(94.9 %id)
BG703347 brain, hippocampus .a 469 to 1271 6 to 808       803/810
(99 %)
27 diff
(96.7 %id)
TI_44346226   .a 469 to 1372 148 to 1052       905/1055
(85 %)
39 diff
(96.4 %id)
DB498475 hypothalamus .a 472 to 977 1 to 506       506/506
(100 %)
2 diff
(99.7 %id)
TI_57165227   .a 473 to 1080 28 to 655       628/659
(95 %)
30 diff
(95.5 %id)
BI837349 pooled pancreas and spleen .a 474 to 1080 1 to 627       627/631
(99 %)
35 diff
(94.5 %id)
DB494853 hypothalamus .a 475 to 966 1 to 492       492/492
(100 %)
0 diff
(100 %id)
CD678489 eye, Trabecular meshwork .a 475 to 1065 1 to 591       591/591
(100 %)
0 diff
(100 %id)
CB529052 Aveolar Macrophage, lung .a 476 to 1210 750 to 17   AAA   734/735
(99 %)
5 diff
(99.4 %id)
CA394895 eye, RPE/choroid .a 484 to 985 1 to 502       502/502
(100 %)
0 diff
(100 %id)
CA394901 eye, RPE/choroid .a 484 to 750 1 to 267       267/267
(100 %)
2 diff
(99.3 %id)
BM052887 Islets of Langerhans, Pancreas .a 499 to 1042 1 to 544       544/544
(100 %)
0 diff
(100 %id)
BM052958 Islets of Langerhans, Pancreas .a 504 to 989 1 to 486       486/486
(100 %)
0 diff
(100 %id)
CD367282 Alveolar Macrophage, lung .a 511 to 1210 716 to 17   AAA   700/700
(100 %)
1 diff
(99.9 %id)
CT003820 T-Lymphocytes .a 526 to 1318 1 to 795       795/795
(100 %)
2 diff
(99.8 %id)
CA309903 Alveolar Macrophage, lung .a 536 to 1210 691 to 17   AAA   675/675
(100 %)
0 diff
(100 %id)
CB529217 Aveolar Macrophage, lung .a 551 to 1210 676 to 17   AAA   660/660
(100 %)
0 diff
(100 %id)
BF792634 adrenal cortex carcinoma, cell line, adrenal gland .a 552 to 1069 1 to 519   AAA   519/519
(100 %)
1 diff
(99.9 %id)
BQ771695 Chondrosarcoma Grade II, Left Pelvis .a 560 to 1208 667 to 19   AAA   649/649
(100 %)
0 diff
(100 %id)
EL952144 eyeball .a 581 to 1031 1 to 451       451/451
(100 %)
4 diff
(99.2 %id)
N88155   .a 598 to 952 1 to 352       352/352
(100 %)
5 diff
(98.6 %id)
BG436471 placenta .a 602 to 1075 1 to 475       475/953
(49 %)
8 diff
(99.2 %id)
BG202446   .a 606 to 910 1 to 306       306/306
(100 %)
6 diff
(98.1 %id)
EL594989 epidermis, skin .a 606 to 966 20 to 380       361/401
(90 %)
7 diff
(98.3 %id)
BX423428 brain, fetal brain .a 609 to 1567 958 to 1       958/958
(100 %)
9 diff
(99.1 %id)
BP294906   .a 624 to 1199 1 to 577       577/582
(99 %)
2 diff
(99.7 %id)
AI523447 aorta .a 625 to 1208 583 to 1       583/583
(100 %)
4 diff
(99.4 %id)
BG214006   .a 629 to 840 1 to 212       212/212
(100 %)
3 diff
(98.6 %id)
BG618268 Liver .a 638 to 1338 1 to 702       702/702
(100 %)
4 diff
(99.5 %id)
CB163954 Liver .a 644 to 1127 11 to 494       484/494
(97 %)
7 diff
(98.6 %id)
W17214 lung .a 656 to 1094 1 to 445       445/445
(100 %)
8 diff
(98.3 %id)
BM675234 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 656 to 1210 571 to 17   fully sequenced, AAA   555/555
(100 %)
0 diff
(100 %id)
BG621916 placenta .a 662 to 1406 1 to 746       746/746
(100 %)
17 diff
(97.8 %id)
BF790876 muscle (skeletal) .a 670 to 1345 1 to 668       668/893
(74 %)
16 diff
(98.3 %id)
BM726825 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 670 to 1210 1 to 541   AAA   541/541
(100 %)
0 diff
(100 %id)
AI244883 Kidney .a 672 to 1219 547 to 1       547/555
(98 %)
1 diff
(99.9 %id)
AV708796 adrenal gland .a 678 to 1259 1 to 584       584/758
(77 %)
15 diff
(98.1 %id)
T28662 gallbladder .a 690 to 886 1 to 197       197/197
(100 %)
0 diff
(100 %id)
AW576796 breast_normal .a 691 to 955 266 to 2       265/268
(98 %)
1 diff
(99.7 %id)
AW950680   .a 691 to 1323 1 to 631       631/631
(100 %)
9 diff
(98.6 %id)
BF241337 bone marrow, from acute myelogenous leukemia .a 702 to 1417 1 to 703       703/871
(80 %)
45 diff
(94.9 %id)
AL525961 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 703 to 1041 340 to 1   fully sequenced,   340/340
(100 %)
4 diff
(98.9 %id)
BF834637 head_neck .a 713 to 1022 315 to 5     Submitted on the opposite strand 311/315
(98 %)
0 diff
(100 %id)
AA962782 2 pooled tumors (clear cell type), Kidney .a 728 to 1213 483 to 1       483/508
(95 %)
14 diff
(97.3 %id)
AI345993 adenocarcinoma, colon .a 733 to 1208 476 to 1       476/494
(96 %)
4 diff
(99.2 %id)
BP307006   .a 733 to 1209 1 to 477   AAA   477/477
(100 %)
0 diff
(100 %id)
AA865391 pooled germ cell tumors .a 734 to 1210 471 to 1       471/503
(93 %)
8 diff
(98.5 %id)
AA918277 adenocarcinoma, colon .a 739 to 1213 472 to 1       472/513
(92 %)
24 diff
(95.4 %id)
AV705160 adrenal gland .a 744 to 1499 1 to 755       755/755
(100 %)
6 diff
(99.3 %id)
BX413222 brain, fetal brain .a 744 to 1557 816 to 2       815/818
(99 %)
19 diff
(97.7 %id)
BG433076 Kidney .a 744 to 1455 1 to 715       715/716
(99 %)
9 diff
(98.8 %id)
BF925488 nervous_tumor .a 750 to 932 179 to 3     Submitted on the opposite strand 177/179
(98 %)
5 diff
(97.3 %id)
BG004093 placenta_normal .a 750 to 932 179 to 3       177/179
(98 %)
5 diff
(97.3 %id)
AV705022 adrenal gland .a 751 to 1386 1 to 635       635/638
(99 %)
6 diff
(99.1 %id)
AI367906 adenocarcinoma, colon .a 753 to 1212 460 to 1       460/460
(100 %)
2 diff
(99.6 %id)
CK301053 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 753 to 1169 428 to 12   AAA   417/426
(97 %)
0 diff
(100 %id)
TI_151808647   .a 753 to 1181 75 to 503       429/994
(43 %)
5 diff
(99.5 %id)
AI366836 adenocarcinoma, colon .a 754 to 1212 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
AA187190   .a 768 to 1209 448 to 2       447/448
(99 %)
6 diff
(98.7 %id)
AA187349   .a 771 to 1209 440 to 2       439/441
(99 %)
0 diff
(100 %id)
AI864284 pooled .a 771 to 1209 441 to 1       441/441
(100 %)
24 diff
(94.6 %id)
AV704462 adrenal gland .a 783 to 1491 1 to 701       701/706
(99 %)
16 diff
(97.8 %id)
AI627752 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 789 to 1251 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BQ024075 placenta .a 812 to 1219 426 to 19   AAA   408/408
(100 %)
1 diff
(99.8 %id)
AI383320 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 824 to 1210 387 to 1       387/387
(100 %)
0 diff
(100 %id)
AL569625 placenta .a 833 to 1696 865 to 1   fully sequenced,   865/865
(100 %)
0 diff
(100 %id)
CK002234 brain/CNS, Bulk tissue from Human Spinal cord .a 835 to 1482 1 to 648       648/649
(99 %)
3 diff
(99.6 %id)
AV708262 adrenal gland .a 851 to 1256 1 to 406       406/406
(100 %)
0 diff
(100 %id)
EC502767 Prostate .a 862 to 951 1 to 90       90/90
(100 %)
0 diff
(100 %id)
BX401243   .a 864 to 1918 1043 to 1       1043/1050
(99 %)
22 diff
(98.0 %id)
BG497519 adenocarcinoma, Prostate .a 864 to 1572 1 to 709       709/873
(81 %)
16 diff
(98.2 %id)
BX398552 Placenta Cot 25-normalized .a 881 to 1694 845 to 31       815/845
(96 %)
0 diff
(100 %id)
BF103560 embryonal carcinoma, testis .a 891 to 1587 1 to 701       701/702
(99 %)
14 diff
(98.1 %id)
EC474227.
matches multiple genes
Prostate .a 924 to 1032 1 to 106   tiling clone, also hits gene FDX1P1 106/106
(100 %)
8 diff
(92.5 %id)
T91819 liver and spleen .a 924 to 1173 252 to 3       250/254
(98 %)
0 diff
(100 %id)
EC574543.
matches multiple genes
Prostate .a 927 to 1032 1 to 102   tiling clone, also hits gene FDX1P1 102/102
(100 %)
6 diff
(94.2 %id)
CD369060 Alveolar Macrophage, lung .a 944 to 1662 730 to 12   AAA   719/719
(100 %)
3 diff
(99.6 %id)
BG620271 placenta .a 955 to 1529 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
N48925 multiple sclerosis lesions .a 967 to 1364 1 to 407   fully sequenced,   407/407
(100 %)
5 diff
(98.8 %id)
AW967575   .a 969 to 1498 35 to 565       531/565
(93 %)
6 diff
(99.0 %id)
F06235 brain, total brain .a 974 to 1223 1 to 250       250/250
(100 %)
0 diff
(100 %id)
BX462056 brain, fetal brain .a 974 to 1917 971 to 38       934/979
(95 %)
0 diff
(100 %id)
BG535314 lung .a 987 to 1598 1 to 618       618/812
(76 %)
28 diff
(96.6 %id)
BG532725 embryonal carcinoma, testis .a 998 to 1719 1 to 719       719/723
(99 %)
14 diff
(98.1 %id)
AV702074 adrenal gland .a 1002 to 1579 21 to 598   AAA   578/598
(96 %)
6 diff
(99.0 %id)
CB985478 Pooled-Glandular .a 1003 to 1723 1 to 728       728/846
(86 %)
17 diff
(98.0 %id)
BG622723 placenta .a 1007 to 1578 1 to 575       575/930
(61 %)
6 diff
(99.4 %id)
AA774562   .a 1018 to 1215 202 to 5       198/202
(98 %)
0 diff
(100 %id)
AA251064.
matches multiple genes
germinal center B cell .a 1020 to 1297 1 to 281     also hits gene MANEA 281/281
(100 %)
13 diff
(95.4 %id)
BF672974 muscle (skeletal) .a 1023 to 1558 143 to 694       552/694
(79 %)
6 diff
(99.2 %id)
BM999916 Fibrosarcoma .a 1040 to 1765 744 to 19   AAA   726/726
(100 %)
3 diff
(99.6 %id)
BG610663 adenocarcinoma, Prostate .a 1052 to 1494 303 to 751       449/751
(59 %)
6 diff
(99.3 %id)
AV704377 adrenal gland .a 1066 to 1656 1 to 591       591/591
(100 %)
0 diff
(100 %id)
BP197095 adrenal gland .a 1068 to 1583 1 to 517   AAA   517/517
(100 %)
1 diff
(99.9 %id)
BM351838 Pancreas, Purified pancreatic islet .a 1082 to 1583 502 to 1       502/502
(100 %)
1 diff
(99.9 %id)
BQ009311 Chondrosarcoma, Left Pubic Bone .a 1089 to 1753 681 to 17   AAA   665/665
(100 %)
4 diff
(99.4 %id)
DB524621 testis .a 1098 to 1583 1 to 486     Submitted on the opposite strand 486/486
(100 %)
1 diff
(99.8 %id)
BQ631275 Pancreas, Purified pancreatic islet .a 1109 to 1582 474 to 1       474/474
(100 %)
6 diff
(98.8 %id)
DB571714 hypothalamus .a 1110 to 1581 1 to 473     Submitted on the opposite strand 473/475
(99 %)
2 diff
(99.6 %id)
CA429329 Cell Line, Chondrosarcoma .a 1110 to 1753 659 to 17   AAA   643/643
(100 %)
4 diff
(99.4 %id)
AW003880 brain, glioblastoma (pooled) .a 1114 to 1663 554 to 5       550/554
(99 %)
0 diff
(100 %id)
DB569555 hypothalamus .a 1116 to 1582 1 to 467     Submitted on the opposite strand 467/467
(100 %)
0 diff
(100 %id)
BG571486 placenta .a 1120 to 1588 1 to 470       470/972
(48 %)
3 diff
(99.7 %id)
BQ017227 lung, Metastatic Chondrosarcoma .a 1137 to 1753 633 to 17   AAA   617/617
(100 %)
5 diff
(99.2 %id)
CB157519 Liver .a 1149 to 1583 473 to 39   AAA Submitted on the opposite strand 435/435
(100 %)
4 diff
(99.1 %id)
TI_157614100   .a 1154 to 1662 593 to 84       510/593
(86 %)
0 diff
(100 %id)
BE543745 cervical carcinoma cell line, cervix .a 1156 to 1681 1 to 526       526/528
(99 %)
2 diff
(99.7 %id)
AW157780 brain, frontal lobe .a 1167 to 1623 467 to 11   AAA   457/457
(100 %)
3 diff
(99.4 %id)
AI278513 placenta .a 1168 to 1528 1 to 361     Submitted on the opposite strand 361/361
(100 %)
0 diff
(100 %id)
BX460782 brain, fetal brain .a 1171 to 1561 389 to 1       389/394
(98 %)
29 diff
(92.7 %id)
AL553076 placenta, Placenta Cot 25-normalized .a 1174 to 1940 776 to 16   fully sequenced,   761/776
(98 %)
9 diff
(98.9 %id)
BG623364 placenta .a 1185 to 1759 1 to 580       580/613
(94 %)
6 diff
(99.1 %id)
AI870573 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1187 to 1585 399 to 1       399/399
(100 %)
1 diff
(99.8 %id)
BU752433 placenta .a 1188 to 1765 595 to 18   AAA   578/578
(100 %)
1 diff
(99.9 %id)
BU752501 placenta .a 1188 to 1765 595 to 18   AAA   578/578
(100 %)
1 diff
(99.9 %id)
AV711116 adrenal cortico adenoma for Cushing'ssyndrome .a 1209 to 1765 1 to 557   AAA   557/557
(100 %)
1 diff
(99.9 %id)
AV711117 adrenal cortico adenoma for Cushing'ssyndrome .a 1209 to 1774 1 to 566   AAA   566/624
(90 %)
5 diff
(99.2 %id)
AI865935 adenocarcinoma, Pancreas .a 1212 to 1585 379 to 6       374/379
(98 %)
0 diff
(100 %id)
AW662690 colon, moderately-differentiated adenocarcinoma .a 1219 to 1584 366 to 1       366/366
(100 %)
2 diff
(99.5 %id)
AI423993 brain, glioblastoma (pooled) .a 1224 to 1766 542 to 1       542/542
(100 %)
3 diff
(99.5 %id)
AA442726   .a 1241 to 1766 530 to 4     Submitted on the opposite strand 527/530
(99 %)
0 diff
(100 %id)
BX362422   .a 1245 to 1737 494 to 1       494/498
(99 %)
6 diff
(98.8 %id)
AA526376 normal prostate, Prostate .a 1246 to 1758 513 to 1       513/514
(99 %)
5 diff
(99.1 %id)
BM998632 lung, Metastatic Chondrosarcoma .a 1249 to 1765 535 to 19   AAA   517/517
(100 %)
5 diff
(99.1 %id)
AI867954 Prostate .a 1291 to 1686 398 to 1       398/398
(100 %)
19 diff
(95.3 %id)
BQ083897 stomach .a 1301 to 1645 1 to 345       345/345
(100 %)
0 diff
(100 %id)
AA847900 germinal center B cell .a 1314 to 1581 270 to 1       270/270
(100 %)
18 diff
(93.4 %id)
DB574039 hypothalamus .a 1328 to 1765 1 to 438   AAA Submitted on the opposite strand 438/438
(100 %)
1 diff
(99.8 %id)
BQ918051 sciatic nerve .a 1333 to 1758 11 to 436   AAA   426/436
(97 %)
6 diff
(98.7 %id)
N46421 multiple sclerosis lesions .a 1334 to 1751 429 to 9   fully sequenced,   421/429
(98 %)
4 diff
(99.1 %id)
DB531821 hippocampus .a 1336 to 1763 1 to 427     Submitted on the opposite strand 427/427
(100 %)
7 diff
(98.4 %id)
CA431948 Alveolar Macrophage, lung .a 1339 to 1999 679 to 19   AAA   661/661
(100 %)
1 diff
(99.9 %id)
AI362119 brain, glioblastoma (pooled) .a 1343 to 1765 456 to 34   AAA   423/423
(100 %)
13 diff
(97.0 %id)
AA918776 Kidney .a 1355 to 1744 391 to 1       391/391
(100 %)
15 diff
(96.2 %id)
AA575975 breast, breast tumor .a 1382 to 1999 615 to 1       615/615
(100 %)
11 diff
(98.3 %id)
AI436243 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1411 to 1999 608 to 20   AAA   589/589
(100 %)
8 diff
(98.7 %id)
AI924883 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1439 to 1999 560 to 1       560/560
(100 %)
2 diff
(99.7 %id)
AI188606 placenta .a 1468 to 2006 548 to 11   AAA   538/538
(100 %)
7 diff
(98.7 %id)
AI264301 Kidney .a 1475 to 1756 290 to 1       290/290
(100 %)
18 diff
(93.8 %id)
DB551013 hippocampus .a 1478 to 2002 1 to 525     Submitted on the opposite strand 525/525
(100 %)
0 diff
(100 %id)
AW148918 Kidney, renal cell tumor .a 1505 to 1758 278 to 24   AAA   255/255
(100 %)
6 diff
(97.7 %id)
DB551543 hippocampus .a 1511 to 2002 1 to 492     Submitted on the opposite strand 492/492
(100 %)
0 diff
(100 %id)
AI283321 ovary, tumor, 5 pooled (see description) .a 1512 to 2001 490 to 2       489/490
(99 %)
0 diff
(100 %id)
AI383212 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1544 to 1999 448 to 1       448/448
(100 %)
22 diff
(95.1 %id)
BX483686   .a 1548 to 2073 1 to 529       529/529
(100 %)
10 diff
(98.2 %id)
AI350634   .a 1559 to 1999 442 to 1       442/442
(100 %)
3 diff
(99.4 %id)
BQ049235 lymph, lymphoma, cell line .a 1560 to 2408 12 to 862       851/866
(98 %)
3 diff
(99.7 %id)
N89718 lung .a 1563 to 1999 446 to 1       446/448
(99 %)
16 diff
(96.5 %id)
AA250934.
matches multiple genes
germinal center B cell .a 1572 to 1999 446 to 28   AAA also hits gene SH2D3C 419/430
(97 %)
11 diff
(97.5 %id)
CB045521 colon, juvenile granulosa tumor .a 1574 to 1972 12 to 410       399/410
(97 %)
6 diff
(98.6 %id)
AI676000 Prostate .a 1620 to 2005 387 to 2       386/387
(99 %)
0 diff
(100 %id)
R96193 pineal gland .a 1628 to 1734 108 to 2       107/108
(99 %)
0 diff
(100 %id)
D25980   .a 1630 to 1761 1 to 132     Submitted on the opposite strand 132/132
(100 %)
0 diff
(100 %id)
AW198132 adenocarcinoma, Pancreas .a 1637 to 2001 365 to 1       365/365
(100 %)
3 diff
(99.2 %id)
AW971554   .a 1682 to 1998 317 to 1     Submitted on the opposite strand 317/317
(100 %)
17 diff
(94.7 %id)
AI867643 Prostate .a 1712 to 2002 291 to 1       291/300
(97 %)
0 diff
(100 %id)
AI810995 Prostate .a 1747 to 1999 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AI620225 Prostate .a 1747 to 1999 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AW195261 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 1900 to 2399 501 to 1       501/501
(100 %)
3 diff
(99.5 %id)
AL120111 amygdala .a 2102 to 2789 1 to 688       688/688
(100 %)
6 diff
(99.2 %id)
N28633 melanocyte .a 2321 to 2591 1 to 272       272/272
(100 %)
2 diff
(99.3 %id)
CN333249 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2417 to 3005 1 to 589       589/589
(100 %)
0 diff
(100 %id)
F04055 brain, total brain .a 2427 to 2769 1 to 343     Submitted on the opposite strand 343/343
(100 %)
0 diff
(100 %id)
R89402 liver and spleen .a 2514 to 2782 1 to 274       274/274
(100 %)
8 diff
(97.1 %id)
CN333246 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2590 to 3328 13 to 752   tiling clone,   740/752
(98 %)
6 diff
(99.3 %id)
BX105038 placenta .a 2623 to 3392 1 to 770       770/770
(100 %)
3 diff
(99.7 %id)
BP431988   .a 2731 to 3170 1 to 441       441/441
(100 %)
4 diff
(99.1 %id)
BI715223 Pancreas, Purified pancreatic islet .a 2813 to 3318 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
BI792424 Pancreas, Purified pancreatic islet .a 2923 to 3390 478 to 11   AAA   468/468
(100 %)
2 diff
(99.6 %id)
BE302085 cervix .a 2923 to 3391 471 to 3       469/471
(99 %)
0 diff
(100 %id)
DB521474 testis .a 2933 to 3391 1 to 459     Submitted on the opposite strand 459/460
(99 %)
2 diff
(99.6 %id)
N22827 melanocyte .a 2957 to 3390 443 to 1       443/503
(88 %)
11 diff
(97.9 %id)
AA505582 breast .a 2979 to 3394 417 to 2   tiling clone,   416/417
(99 %)
0 diff
(100 %id)
BX402276 Placenta Cot 25-normalized .a 3042 to 4112 1070 to 6   tiling clone,   1065/1077
(98 %)
0 diff
(100 %id)
F02515 brain, total brain .a 3086 to 3392 307 to 1       307/307
(100 %)
0 diff
(100 %id)
F07795 brain, total brain .a 3139 to 3392 254 to 1       254/254
(100 %)
0 diff
(100 %id)
R77656 placenta .a 3189 to 3350 162 to 1       162/163
(99 %)
1 diff
(99.4 %id)
BG704683 brain, hippocampus .b 1 to 590 1 to 590 exact tiling clone,   590/592
(99 %)
15 diff
(97.5 %id)
AV707688 adrenal gland .c-u 1 to 761 1 to 762 Q16X F20L F27X Y30S K34Q tiling clone,   762/764
(99 %)
37 diff
(95.2 %id)
DB482689 hippocampus .d 1 to 499 1 to 499 exact tiling clone,   499/499
(100 %)
0 diff
(100 %id)
EC474227.
matches multiple genes
Prostate P1.a-u 1 to 109 1 to 106   tiling clone, also hits gene FDX1P1 106/106
(100 %)
8 diff
(92.5 %id)
EC574543.
matches multiple genes
Prostate P1.a-u 4 to 109 1 to 102   tiling clone, also hits gene FDX1P1 102/102
(100 %)
6 diff
(94.2 %id)
AV711506 adrenal cortico adenoma for Cushing'ssyndrome Gene FDX1, variant not shown         This clone was ignored    
AV708401 adrenal gland Gene FDX1, variant not shown         This clone was ignored    
AV655171 corresponding non cancerous liver tissue Gene FDX1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV706524 adrenal gland Gene FDX1, variant not shown         Suspected internal deletion, this clone was ignored    
AV701684 adrenal gland Gene FDX1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV709948 adrenal gland Gene FDX1, variant not shown         This clone was ignored    
BM564829 eye, retinoblastoma Gene FDX1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI