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Gene FCHSD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
127 supporting clones for gene FCHSD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY217346   .a 1 to 4319 1 to 4319 exact tiling clone, AAA   4319/4319
(100 %)
2 diff
(100.0 %id)
NM_033449.1   .a 1 to 4319 1 to 4319 exact RefSeq, AAA   4319/4319
(100 %)
2 diff
(100.0 %id)
AK000007 Spleen .a 17 to 4319 1 to 4303   available from FLJ,   4303/4303
(100 %)
2 diff
(100.0 %id)
BG995514 head_neck .a 339 to 632 128 to 421       294/421
(69 %)
8 diff
(98.1 %id)
BG749442 eye, normal pigmented retinal epithelium .a 385 to 1176 1 to 791       791/798
(99 %)
20 diff
(97.5 %id)
BI036469 nervous_tumor .a 711 to 865 42 to 196       155/197
(78 %)
7 diff
(96.5 %id)
CR993842 T-Lymphocytes .a 997 to 1784 1 to 788       788/791
(99 %)
1 diff
(99.9 %id)
BM449936 melanotic melanoma, skin .a 1423 to 2309 1 to 899       899/900
(99 %)
16 diff
(98.3 %id)
W19592 parathyroid gland, parathyroid tumor .a 1471 to 1932 1 to 465       465/469
(99 %)
15 diff
(96.9 %id)
DB157345 thymus .a 1474 to 2065 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
BU849451 ovary, teratocarcinoma, cell line .a 1512 to 2306 1 to 800       800/905
(88 %)
8 diff
(99.2 %id)
BE151906 head_neck .a 1555 to 1947 14 to 407       394/418
(94 %)
14 diff
(96.7 %id)
CN398064 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1584 to 2171 1 to 588       588/588
(100 %)
5 diff
(99.2 %id)
BQ331246 lung_tumor .a 1589 to 1917 26 to 359       334/362
(92 %)
14 diff
(96.2 %id)
BG980192 colon_normal .a 1662 to 1887 217 to 1       217/217
(100 %)
7 diff
(96.8 %id)
BM825872 Ascites, stomach .a 1663 to 1967 1 to 305       305/305
(100 %)
0 diff
(100 %id)
AA045395 uterus .a 1957 to 2207 1 to 250       250/250
(100 %)
1 diff
(99.6 %id)
CX872577 embryonic stem .a 2286 to 3038 1 to 753       753/753
(100 %)
0 diff
(100 %id)
AA045079 uterus .a 2327 to 2640 314 to 1       314/321
(97 %)
6 diff
(98.2 %id)
BF948362 nervous_normal .a 2565 to 2882 13 to 336       324/336
(96 %)
6 diff
(98.3 %id)
TI_57180695   .a 2588 to 3330 36 to 776       741/776
(95 %)
6 diff
(99.3 %id)
BI766797 pooled lung and spleen .a 2598 to 3330 1 to 731       731/731
(100 %)
6 diff
(99.2 %id)
CT003554 T-Lymphocytes .a 2608 to 3244 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
AW407143 lymph .a 3355 to 3656 8 to 309       302/309
(97 %)
6 diff
(98.1 %id)
TI_154144992   .a 3355 to 3974 81 to 720       640/677
(94 %)
65 diff
(90.4 %id)
TI_154148256   .a 3355 to 3899 81 to 623       543/554
(98 %)
31 diff
(94.5 %id)
TI_227713894   .a 3519 to 4314 889 to 103   AAA   787/937
(83 %)
11 diff
(98.9 %id)
CD364643 Alveolar Macrophage, lung .a 3605 to 4314 724 to 16   AAA   709/709
(100 %)
1 diff
(99.9 %id)
AA284733 ovarian tumor, ovary .a 3650 to 4028 9 to 389   fully sequenced,   381/389
(97 %)
10 diff
(97.5 %id)
AI761438 pooled .a 3773 to 4317 547 to 2       546/547
(99 %)
0 diff
(100 %id)
AA214554 germinal center B cell .a 3798 to 4319 521 to 1       521/523
(99 %)
9 diff
(98.3 %id)
AW380082 head_neck .a 3800 to 4310 25 to 535       511/544
(93 %)
5 diff
(99.1 %id)
AI742830 pooled .a 3801 to 4317 518 to 2   tiling clone,   517/518
(99 %)
0 diff
(100 %id)
AW295490   .a 3809 to 4319 528 to 18   AAA   511/511
(100 %)
3 diff
(99.5 %id)
AI955603 adenocarcinoma, Pancreas .a 3824 to 4315 501 to 9       493/501
(98 %)
0 diff
(100 %id)
AI453541 pooled .a 3825 to 4317 495 to 2       494/495
(99 %)
0 diff
(100 %id)
AI858504 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3825 to 4314 490 to 1       490/490
(100 %)
2 diff
(99.6 %id)
AW052085 pooled .a 3875 to 4317 444 to 2       443/444
(99 %)
0 diff
(100 %id)
AA485669 ovarian tumor, ovary .a 3886 to 4317 432 to 2       431/432
(99 %)
0 diff
(100 %id)
AI587476 adenocarcinoma, Pancreas .a 3908 to 4315 408 to 1       408/408
(100 %)
2 diff
(99.6 %id)
AW135172   .a 3927 to 4319 410 to 18   AAA   393/393
(100 %)
2 diff
(99.5 %id)
AA287153 ovarian tumor, ovary .a 3998 to 4317 321 to 2   fully sequenced,   320/321
(99 %)
0 diff
(100 %id)
AA814271 germinal center B cell .a 4007 to 4135 127 to 1       127/132
(96 %)
2 diff
(98.5 %id)
BU178077 melanotic melanoma, skin .a 4047 to 4319 1 to 273   AAA   273/273
(100 %)
1 diff
(99.7 %id)
AI865011 lymph node, lymphoma, follicular mixed small and largecell .a 4056 to 4320 266 to 2       265/266
(99 %)
0 diff
(100 %id)
AI382649 B-cell, chronic lymphotic leukemia .a 4175 to 4315 141 to 1       141/141
(100 %)
0 diff
(100 %id)
CR990159 T-Lymphocytes .b 1 to 936 1 to 933   tiling clone,   933/933
(100 %)
4 diff
(99.6 %id)
TI_57171509   .b 3 to 840 82 to 921       840/922
(91 %)
19 diff
(98.0 %id)
BI827614 brain, medulla .b 10 to 840 1 to 833       833/834
(99 %)
15 diff
(98.3 %id)
BE242637 leukopheresis .b 17 to 520 1 to 504       504/504
(100 %)
3 diff
(99.5 %id)
CB989249 Human Placenta, placenta .b 18 to 796 28 to 806       779/806
(96 %)
15 diff
(98.2 %id)
CB960623 Human Placenta, placenta .b 18 to 723 28 to 739       712/789
(90 %)
16 diff
(98.0 %id)
CN398069 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 19 to 680 1 to 662       662/662
(100 %)
1 diff
(99.9 %id)
DA931267 Spleen .b 21 to 711 2 to 692   capped   691/691
(100 %)
4 diff
(99.5 %id)
BU177337 melanotic melanoma, skin .b 24 to 904 12 to 901       889/901
(98 %)
21 diff
(97.7 %id)
CT003695 T-Lymphocytes .b 24 to 718 1 to 695       695/696
(99 %)
2 diff
(99.8 %id)
BI911126 leukocyte .b 35 to 751 37 to 750       719/750
(95 %)
7 diff
(99.1 %id)
TI_57235578   .b 35 to 751 65 to 778       719/778
(92 %)
7 diff
(99.2 %id)
BE391751 endometrium, adenocarcinoma cell line, uterus .b 37 to 676 85 to 739       646/745
(86 %)
92 diff
(87.7 %id)
BF125040 melanotic melanoma, skin .b 37 to 714 1 to 689       699/864
(80 %)
92 diff
(89.4 %id)
BC047016 Blood, adult leukocytes .b 38 to 2618 1 to 2581   tiling clone, available from MGC, AAA   2581/2581
(100 %)
0 diff
(100 %id)
BI908923 leukocyte .b 38 to 906 1 to 871       871/874
(99 %)
16 diff
(98.2 %id)
TI_57235176   .b 43 to 906 41 to 906       867/909
(95 %)
18 diff
(98.1 %id)
BE387540 melanotic melanoma, skin .b 45 to 670 58 to 684       623/686
(90 %)
17 diff
(97.6 %id)
BE302547 melanotic melanoma, skin .b 63 to 591 1 to 529       529/532
(99 %)
2 diff
(99.7 %id)
CN398067 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 81 to 345 1 to 265       265/265
(100 %)
0 diff
(100 %id)
AL706266 human skeletal muscle .b 193 to 377 1 to 186       186/186
(100 %)
5 diff
(97.4 %id)
TI_1948212186   .b 240 to 907 126 to 793   fully sequenced, AAA   668/793
(84 %)
7 diff
(99.2 %id)
EL734523 mixed .b 244 to 889 1 to 645       645/645
(100 %)
4 diff
(99.4 %id)
TI_1948212187   .b 877 to 1456 720 to 141   fully sequenced,   580/720
(80 %)
0 diff
(100 %id)
AI700778 carcinoid, lung .b 1873 to 2392 1 to 520     Submitted on the opposite strand 520/520
(100 %)
1 diff
(99.9 %id)
DB332466 Spleen .b 2122 to 2612 494 to 6       489/495
(98 %)
0 diff
(100 %id)
BE208649 melanotic melanoma, skin .b 2265 to 2619 356 to 2       355/356
(99 %)
0 diff
(100 %id)
CR990014 T-Lymphocytes .c 1 to 857 1 to 860   tiling clone,   860/861
(99 %)
6 diff
(99.4 %id)
AA447822 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 641 to 1082 1 to 441   fully sequenced,   441/441
(100 %)
2 diff
(99.6 %id)
AA256234 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 657 to 1087 20 to 467   fully sequenced,   449/468
(95 %)
9 diff
(98.1 %id)
AY358478   .c 696 to 4627 1 to 3934 exact tiling clone,   3934/3934
(100 %)
5 diff
(99.9 %id)
AI417105 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 956 to 1391 436 to 1       436/436
(100 %)
2 diff
(99.6 %id)
AI276548 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 976 to 1439 464 to 1       464/464
(100 %)
3 diff
(99.4 %id)
AA447672 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1052 to 1439 389 to 1   fully sequenced,   389/389
(100 %)
4 diff
(99.0 %id)
AA256175 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1057 to 1439 382 to 1   fully sequenced,   382/382
(100 %)
7 diff
(98.2 %id)
DR006830 Spleen .c 1236 to 1949 7 to 720       714/720
(99 %)
6 diff
(99.2 %id)
BE242702 leukopheresis .d 1 to 297 1 to 297       297/297
(100 %)
1 diff
(99.7 %id)
BM193837 leukopheresis .d 1 to 509 1 to 509   tiling clone,   509/509
(100 %)
0 diff
(100 %id)
BE409759 choriocarcinoma, placenta .d 22 to 674 31 to 679       649/679
(95 %)
9 diff
(98.7 %id)
BE410602 choriocarcinoma, placenta .d 26 to 612 1 to 586       586/586
(100 %)
3 diff
(99.5 %id)
TI_57196908   .d 27 to 556 65 to 597       533/910
(58 %)
12 diff
(98.7 %id)
CR991912 T-Lymphocytes .d 29 to 834 1 to 806   tiling clone,   806/806
(100 %)
6 diff
(99.3 %id)
BI824812 pooled brain, lung, testis .d 31 to 556 1 to 529       529/842
(62 %)
6 diff
(99.3 %id)
CN398070 embryonic stem cells, cell lines H1, H7, andH9 .d 44 to 670 1 to 628       628/628
(100 %)
1 diff
(99.9 %id)
TI_154198069   .e 1 to 659 98 to 755   tiling clone,   658/909
(72 %)
14 diff
(98.5 %id)
TI_154196437   .e 3 to 917 22 to 932 N132T N142T H144T L145S D146T ... tiling clone,   911/1082
(84 %)
34 diff
(96.9 %id)
BE272762 Kidney, renal cell adenocarcinoma .f 1 to 562 1 to 562 exact tiling clone,   562/562
(100 %)
0 diff
(100 %id)
BF798759 colon_ins .g-u 1 to 226 1 to 227   tiling clone,   227/241
(94 %)
17 diff
(93.0 %id)
DA568838 whole embryo, mainly head .g-u 77 to 874 2 to 795   tiling clone, capped   794/795
(99 %)
12 diff
(98.5 %id)
BU074147 insulinoma, Pancreas .g-u 143 to 706 579 to 16   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 564/579
(97 %)
0 diff
(100 %id)
BG977356 colon_ins .g-u 146 to 297 122 to 273       152/273
(55 %)
6 diff
(97.9 %id)
BE646638 B-cell, chronic lymphotic leukemia .g-u 201 to 706 516 to 11   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 506/516
(98 %)
0 diff
(100 %id)
AI765522 2 pooled tumors (clear cell type), Kidney .g-u 254 to 706 488 to 32   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 457/488
(93 %)
0 diff
(100 %id)
AF086518   .g-u 275 to 704 1 to 430   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 430/440
(97 %)
1 diff
(99.8 %id)
W94671 heart .g-u 279 to 704 429 to 2       428/429
(99 %)
0 diff
(100 %id)
W95139 heart .g-u 288 to 686 1 to 404       404/429
(94 %)
6 diff
(98.7 %id)
AI079116 parathyroid gland, parathyroid tumor .g-u 291 to 706 421 to 7       415/421
(98 %)
0 diff
(100 %id)
AA766256 germinal center B cell .g-u 295 to 704 431 to 24   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 408/431
(94 %)
0 diff
(100 %id)
AA846207 parathyroid gland, parathyroid tumor .g-u 301 to 682 381 to 1       381/381
(100 %)
3 diff
(99.3 %id)
AI123765 pooled .g-u 305 to 704 436 to 34   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 403/438
(92 %)
0 diff
(100 %id)
CN398066 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g-u 343 to 702 1 to 361       361/361
(100 %)
1 diff
(99.8 %id)
AI269741 pooled .g-u 356 to 705 353 to 1       353/353
(100 %)
2 diff
(99.5 %id)
AW449541   .g-u 392 to 704 330 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 313/330
(94 %)
0 diff
(100 %id)
AI204381   .g-u 430 to 704 287 to 13   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 275/287
(95 %)
0 diff
(100 %id)
AI887064 anaplastic oligodendroglioma, brain .g-u 496 to 706 220 to 11   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 210/220
(95 %)
0 diff
(100 %id)
AA781274 parathyroid gland, parathyroid tumor .g-u 554 to 704 160 to 11   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 150/160
(93 %)
0 diff
(100 %id)
DB355399 whole embryo, mainly head .g-u 1851 to 2380 528 to 1   tiling clone,   528/530
(99 %)
13 diff
(97.6 %id)
CN398065 embryonic stem cells, cell lines H1, H7, andH9 .h 1 to 584 1 to 585 E81* tiling clone,   585/585
(100 %)
5 diff
(99.2 %id)
AW860003 colon .i 1 to 518 5 to 522   tiling clone,   518/522
(99 %)
6 diff
(98.9 %id)
AW862290 colon .i 1 to 518 5 to 522       518/522
(99 %)
6 diff
(98.9 %id)
CN398068 embryonic stem cells, cell lines H1, H7, andH9 .i 373 to 1019 1 to 647 exact tiling clone,   647/647
(100 %)
2 diff
(99.7 %id)
BF362987 nervous_normal .i 374 to 552 19 to 196       178/196
(90 %)
6 diff
(97.0 %id)
BF362989 nervous_normal .i 390 to 547 44 to 202       159/202
(78 %)
6 diff
(97.1 %id)
BM710927 eye, fetal eyes .i 405 to 890 1 to 486 exact fully sequenced,   486/486
(100 %)
1 diff
(99.8 %id)
BM666027 eye, fetal eyes .i 860 to 1317 476 to 19   tiling clone, fully sequenced, AAA   458/458
(100 %)
0 diff
(100 %id)
AK126203 thymus .j 1 to 3180 2 to 3181 exact tiling clone, available from FLJ,   3181/3181
(100 %)
1 diff
(100.0 %id)
DB133281 thymus .j 1 to 580 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
AW341388 carcinoid, lung .j 81 to 425 1 to 345     Submitted on the opposite strand 345/345
(100 %)
5 diff
(98.6 %id)
BE218768 carcinoid, lung .j 81 to 590 1 to 510     Submitted on the opposite strand 510/510
(100 %)
4 diff
(99.3 %id)
BQ357422 head_neck .j 184 to 527 343 to 2       342/347
(98 %)
0 diff
(100 %id)
DB162035 thymus .j 396 to 991 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA960144 Spleen .j 486 to 1024 2 to 540   capped   539/541
(99 %)
1 diff
(99.9 %id)
BQ341119 nervous_normal .j 498 to 902 4 to 411       408/411
(99 %)
6 diff
(98.6 %id)
BE701817 nervous_normal .j 788 to 973 10 to 195       186/195
(95 %)
6 diff
(97.0 %id)
AA203283 liver and spleen .j 813 to 1448 1 to 624       624/674
(92 %)
22 diff
(96.8 %id)
DB344780 thymus .j 2628 to 3180 554 to 1       554/554
(100 %)
1 diff
(99.9 %id)
DB027613 testis .k 1 to 575 2 to 577 exact tiling clone, capped   576/576
(100 %)
3 diff
(99.5 %id)
CN412534 embryonic stem cells, cell lines H1, H7, andH9 .l-u 1 to 127 1 to 127 exact tiling clone,   127/127
(100 %)
0 diff
(100 %id)
CR997353 T-Lymphocytes Gene FCHSD1, variant not shown         This clone was ignored    
AK027281 whole embryo, mainly head Gene FCHSD1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AW337193 adenocarcinoma, Pancreas Gene FCHSD1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI