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Gene FANCD2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
142 supporting clones for gene FANCD2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA864640 placenta .a 1 to 583 2 to 584   tiling clone, capped   583/584
(99 %)
2 diff
(99.7 %id)
DA887207   .a 6 to 556 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
NM_033084.3   .a 43 to 5246 1 to 5204 exact RefSeq,   5204/5204
(100 %)
0 diff
(100 %id)
AF230336   .a 58 to 5246 1 to 5189 exact tiling clone,   5189/5189
(100 %)
1 diff
(100.0 %id)
R92899 liver and spleen .a 3598 to 3804 1 to 207       207/209
(99 %)
2 diff
(99.1 %id)
BF511199   .a 4133 to 4597 482 to 18   AAA   465/475
(97 %)
1 diff
(99.8 %id)
BG187496   .a 4298 to 4857 568 to 9     Submitted on the opposite strand 560/870
(64 %)
0 diff
(100 %id)
AI418483 pooled .a 4582 to 4925 360 to 17       344/360
(95 %)
0 diff
(100 %id)
R94840 liver and spleen .a 4594 to 4869 277 to 1       277/279
(99 %)
2 diff
(99.3 %id)
CV370583 stomach .b 1 to 329 6 to 329       283/329
(86 %)
28 diff
(91.5 %id)
DA610450   .b 4 to 551 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
BI048172 stomach .b 6 to 391 1 to 372       372/381
(97 %)
13 diff
(96.6 %id)
BI464744 testis .b 23 to 624 7 to 592   available from MGC,   495/895
(55 %)
39 diff
(95.7 %id)
BC038666 testis .b 24 to 5210 1 to 5187 I1249K E1250L P1251S G1252L T1253A ... tiling clone, available from MGC, AAA   5187/5187
(100 %)
7 diff
(99.9 %id)
AK307512 brain .c 1 to 2679 1 to 2679   tiling clone,   2679/2679
(100 %)
1 diff
(100.0 %id)
BP312515 mammary gland .c 1 to 584 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA501710 brain .c 2 to 558 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA734037   .c 2 to 459 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
BX956311   .c 3 to 676 1 to 674       674/675
(99 %)
3 diff
(99.6 %id)
AL517649 brain, neuroblastoma, neuroblastoma cells .c 15 to 1082 1 to 1061       1061/1061
(100 %)
13 diff
(98.8 %id)
NM_001018115.1   .c 16 to 5117 1 to 5102 exact RefSeq, AAA   5102/5102
(100 %)
0 diff
(100 %id)
BP247731 Kidney .c 20 to 602 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
DA666764   .c 25 to 572 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DB097505 testis .c 28 to 605 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB140212 thymus .c 28 to 554 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
CB146712 Liver .c 30 to 658 1 to 629       629/629
(100 %)
0 diff
(100 %id)
AF340183   .c 31 to 4483 1 to 4453 exact tiling clone,   4453/4455
(99 %)
1 diff
(100.0 %id)
BP234680 coronary artery .c 33 to 614 1 to 586       586/588
(99 %)
8 diff
(98.7 %id)
DA753781   .c 36 to 588 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
CN346704 embryonic stem cells, DMSO-treated H9 cellline .c 40 to 462 1 to 423       423/423
(100 %)
0 diff
(100 %id)
BE619536 large cell carcinoma, lung .c 51 to 800 1 to 746   available from MGC,   746/751
(99 %)
32 diff
(95.8 %id)
AW821120 stomach .c 56 to 376 15 to 334       320/334
(95 %)
7 diff
(98.0 %id)
BI048109 stomach .c 74 to 403 10 to 337       328/337
(97 %)
18 diff
(94.7 %id)
EL736405 mixed .c 94 to 731 1 to 638       638/638
(100 %)
0 diff
(100 %id)
CD171848 testis .c 103 to 878 1 to 776       776/853
(90 %)
2 diff
(99.8 %id)
BI048112 stomach .c 106 to 531 7 to 437       431/438
(98 %)
19 diff
(95.7 %id)
BF935372 nervous_tumor .c 267 to 514 248 to 2     Submitted on the opposite strand 247/248
(99 %)
2 diff
(99.2 %id)
BG950774 colon .c 296 to 569 276 to 3       274/283
(96 %)
7 diff
(97.6 %id)
BF899630 marrow .c 359 to 576 1 to 216       216/235
(91 %)
8 diff
(96.6 %id)
DA729203   .c 487 to 1118 2 to 636   capped   633/639
(99 %)
5 diff
(99.3 %id)
AW821133 stomach .c 557 to 1167 642 to 33       610/642
(95 %)
3 diff
(99.6 %id)
AK022613   .c 572 to 2672 1 to 2101   available from FLJ,   2101/2101
(100 %)
3 diff
(99.9 %id)
AU124890   .c 573 to 1371 2 to 797   capped   796/804
(99 %)
9 diff
(98.9 %id)
CN346705 embryonic stem cells, DMSO-treated H9 cellline .c 619 to 1137 1 to 519       519/519
(100 %)
0 diff
(100 %id)
DA847763 placenta .c 667 to 1213 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BI048060 stomach .c 745 to 1167 446 to 18       427/446
(95 %)
16 diff
(96.5 %id)
BX451845 neuroblastoma .c 930 to 1646 6 to 722       717/815
(87 %)
18 diff
(97.8 %id)
EH320196   .c 1060 to 1139 1 to 80       80/80
(100 %)
3 diff
(96.3 %id)
AU128927   .c 1164 to 1859 2 to 695   capped   694/698
(99 %)
8 diff
(98.9 %id)
BP247944 Kidney .c 1340 to 1925 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
DB073069 testis .c 1483 to 2027 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA909576   .c 1723 to 2291 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BP282321 bone marrow .c 1754 to 2340 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BF797734 lymph, lymphoma, cell line .c 1798 to 2452 1 to 656       656/969
(67 %)
9 diff
(99.1 %id)
EH351702.
matches multiple genes
  .c 1928 to 1995 1 to 68   tiling clone, also hits gene LOC100129929 68/68
(100 %)
0 diff
(100 %id)
CN334536 embryonic stem cells, DMSO-treated H9 cellline .c 2077 to 2700 1 to 624       624/624
(100 %)
4 diff
(99.4 %id)
DB366048   .c 2104 to 2681 578 to 1       578/588
(98 %)
14 diff
(97.7 %id)
AI953711 pooled germ cell tumors .c 2112 to 2681 569 to 1       569/569
(100 %)
1 diff
(99.9 %id)
AU148668   .c 2140 to 2672 533 to 1       533/554
(96 %)
7 diff
(98.8 %id)
BF224011 pooled germ cell tumors .c 2185 to 2681 497 to 1       497/497
(100 %)
0 diff
(100 %id)
AI916071 colon, colon tumor, RER+ .c 2344 to 2689 347 to 1       347/349
(99 %)
1 diff
(99.8 %id)
EC575806 Prostate .c 2416 to 2506 1 to 91       91/91
(100 %)
1 diff
(99.0 %id)
BP244292 Kidney .c 2511 to 3092 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP335784 coronary artery .c 2618 to 3200 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP337389 coronary artery .c 2628 to 3210 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP363824 lung .c 2655 to 3237 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP246929 Kidney .c 2669 to 3265 1 to 598       598/598
(100 %)
8 diff
(98.7 %id)
BP248646 Kidney .c 2669 to 3250 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
TI_159696687   .c 2682 to 3140 131 to 589     Submitted on the opposite strand 459/1050
(43 %)
6 diff
(99.5 %id)
BX432942 neuroblastoma .c 2707 to 3636 932 to 6       929/935
(99 %)
6 diff
(99.4 %id)
BX432943 neuroblastoma .c 2712 to 3636 930 to 8       925/930
(99 %)
16 diff
(98.3 %id)
BP247018 Kidney .c 2714 to 3297 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
AK074406   .c 2776 to 4487 1 to 1712   available from FLJ, AAA   1712/1712
(100 %)
3 diff
(99.9 %id)
BM010937 brain, neuroblastoma, cell line .c 3123 to 4034 1 to 927       842/927
(90 %)
32 diff
(96.6 %id)
TI_59379824   .c 3124 to 4034 99 to 1024       841/926
(90 %)
31 diff
(96.7 %id)
BM920269 pooled pancreas and spleen .c 3165 to 4060 1 to 906       902/1011
(89 %)
15 diff
(98.6 %id)
BP280965   .c 3214 to 3800 1 to 588       588/592
(99 %)
5 diff
(99.2 %id)
AL517648 brain, neuroblastoma, neuroblastoma cells .c 3350 to 4447 1086 to 1       1088/1086
(100 %)
24 diff
(97.8 %id)
BG423091 Kidney, renal cell adenocarcinoma .c 3593 to 4279 1 to 690       690/874
(78 %)
8 diff
(99.1 %id)
TI_154127662   .c 3653 to 4473 912 to 91   AAA   822/996
(82 %)
8 diff
(99.2 %id)
CA417296 Chondrosarcoma Cell line .c 3751 to 4473 743 to 19   AAA   725/725
(100 %)
2 diff
(99.8 %id)
CN335846 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3810 to 4448 9 to 648       640/648
(98 %)
8 diff
(98.8 %id)
AW390353 stomach .c 3882 to 4462 1 to 582       582/587
(99 %)
22 diff
(96.3 %id)
BG473911 eye, retinoblastoma .c 4055 to 4568 1 to 513       513/1165
(44 %)
3 diff
(99.8 %id)
BG474582 eye, retinoblastoma .c 4055 to 4577 1 to 521   tiling clone,   521/832
(62 %)
8 diff
(99.1 %id)
BF892537 marrow .c 4141 to 4492 368 to 15     Submitted on the opposite strand 354/375
(94 %)
1 diff
(99.8 %id)
AA974322 pooled germ cell tumors .c 4141 to 4479 344 to 5       340/344
(98 %)
1 diff
(99.8 %id)
AW089025 ovary, tumor, 5 pooled (see description) .c 4235 to 4483 251 to 3       249/251
(99 %)
0 diff
(100 %id)
BE927757 colon .c 4252 to 4565 2 to 315       314/329
(95 %)
19 diff
(94.3 %id)
BE927755 colon .c 4260 to 4559 305 to 6   tiling clone,   300/315
(95 %)
0 diff
(100 %id)
BE927763 colon .c 4277 to 4559 1 to 284       284/304
(93 %)
12 diff
(96.1 %id)
BU617044 Cell Line, Chondrosarcoma .c 4564 to 5123 574 to 19   tiling clone, AAA   556/575
(96 %)
1 diff
(99.9 %id)
BM996805 lung, Metastatic Chondrosarcoma .c 4572 to 5108 1 to 537     Submitted on the opposite strand 537/539
(99 %)
5 diff
(99.1 %id)
BM990366 lung, Metastatic Chondrosarcoma .c 4575 to 5111 556 to 19   AAA   538/548
(98 %)
4 diff
(99.3 %id)
CA429901 Cell Line, Chondrosarcoma .c 4589 to 5117 547 to 19   AAA   529/529
(100 %)
0 diff
(100 %id)
CN313735 embryonic stem cells, DMSO-treated H9 cellline .c 4624 to 5118 1 to 495       495/498
(99 %)
3 diff
(99.4 %id)
BU861215 mixed (pool of 40 RNAs) .c 4761 to 5124 1 to 364       364/950
(38 %)
7 diff
(99.3 %id)
BY798073 eye .c 4763 to 5118 1 to 356       356/357
(99 %)
2 diff
(99.5 %id)
BY999430   .c 4808 to 5117 1 to 310     Submitted on the opposite strand 310/314
(98 %)
3 diff
(99.1 %id)
AW809381 stomach .c 4818 to 5045 235 to 10       226/238
(94 %)
0 diff
(100 %id)
AW809604 stomach .c 4825 to 5037 213 to 3       211/213
(99 %)
0 diff
(100 %id)
AA579890 colon, colon tumor RER+ .c 4837 to 5117 289 to 9       281/331
(84 %)
0 diff
(100 %id)
BF330841 breast .c 4865 to 5048 196 to 12       185/196
(94 %)
0 diff
(100 %id)
BF746678 breast .c 4871 to 5039 1 to 167       167/167
(100 %)
3 diff
(98.3 %id)
DW437459 Liver .d 1 to 235 14 to 249       239/249
(95 %)
8 diff
(96.8 %id)
DA749163   .d 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DW448342 Liver .d 159 to 195 172 to 208       208/208
(100 %)
9 diff
(95.7 %id)
AL832427 melanoma (MeWo cell line) .d 1818 to 5240 1 to 3423   tiling clone, available from DKFZ, AAA   3423/3423
(100 %)
5 diff
(99.9 %id)
DB325043   .d 2379 to 2895 517 to 1       517/520
(99 %)
0 diff
(100 %id)
BE046901 pooled germ cell tumors .e 1 to 603 603 to 1   tiling clone,   603/603
(100 %)
0 diff
(100 %id)
DB145875 thymus .e 370 to 905 2 to 538   tiling clone, capped   537/537
(100 %)
1 diff
(99.9 %id)
T84537 liver and spleen .f 1 to 360 1 to 363   tiling clone,   363/423
(85 %)
6 diff
(98.6 %id)
T91383 liver and spleen .f 370 to 818 462 to 7   tiling clone,   456/463
(98 %)
9 diff
(98.1 %id)
BC013582 Lung, large cell carcinoma .g 1 to 2462 1 to 2463 exact tiling clone, available from MGC, AAA   2463/2463
(100 %)
10 diff
(99.6 %id)
TI_1948236959   .g 248 to 776 1133 to 610     Submitted on the opposite strand 524/1396
(37 %)
34 diff
(97.6 %id)
TI_1948236960   .g 308 to 776 1080 to 603     Submitted on the opposite strand 478/1229
(38 %)
32 diff
(97.4 %id)
TI_1948236787   .g 310 to 776 1065 to 603     Submitted on the opposite strand 417/1365
(30 %)
36 diff
(97.4 %id)
TI_1948236614   .g 426 to 776 951 to 601     Submitted on the opposite strand 351/1364
(25 %)
5 diff
(99.7 %id)
TI_1948236788   .g 428 to 776 969 to 618     Submitted on the opposite strand 350/1270
(27 %)
19 diff
(98.6 %id)
TI_1948237147   .g 429 to 776 950 to 602     Submitted on the opposite strand 349/1384
(25 %)
15 diff
(99.0 %id)
TI_1948236615   .g 488 to 776 897 to 606     Submitted on the opposite strand 292/1203
(24 %)
8 diff
(99.4 %id)
TI_1948237148   .g 488 to 776 900 to 609     Submitted on the opposite strand 292/1274
(22 %)
8 diff
(99.4 %id)
DB149968 thymus .h 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
BP247900 Kidney .h 265 to 861 1 to 603   tiling clone,   603/624
(96 %)
16 diff
(97.5 %id)
BP314986 mammary gland .i 1 to 581 1 to 581 G189X tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AW015860   .j 1 to 541 559 to 17 G25V tiling clone, AAA   542/545
(99 %)
1 diff
(99.9 %id)
AI971037 Prostate .j 36 to 541 506 to 1       506/506
(100 %)
1 diff
(99.9 %id)
BG055088 Prostate .j 44 to 541 498 to 1   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
AI686403 Prostate .j 97 to 536 447 to 6       442/447
(98 %)
1 diff
(99.8 %id)
CN264098 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .k-u 1 to 528 3 to 530 exact tiling clone,   530/530
(100 %)
2 diff
(99.7 %id)
H21679 breast .k-u 408 to 791 1 to 384   tiling clone,   384/390
(98 %)
1 diff
(99.8 %id)
BQ773820 Chondrosarcoma Grade II, Left Pelvis .k-u 709 to 1434 728 to 7   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 722/728
(99 %)
0 diff
(100 %id)
DB164293 thymus .l 1 to 511 2 to 516   tiling clone, capped   515/515
(100 %)
3 diff
(99.5 %id)
BG743920 blood, natural killer cells, cell line .l 210 to 738 580 to 42 L2P T8P N9H T12A I16L ... tiling clone, AAA Submitted on the opposite strand 539/881
(61 %)
36 diff
(96.0 %id)
AW590391 pooled germ cell tumors .m 1 to 558 558 to 1 L5S L19F tiling clone,   558/558
(100 %)
3 diff
(99.5 %id)
AI656012 pooled germ cell tumors .m 58 to 558 524 to 24   AAA   501/501
(100 %)
0 diff
(100 %id)
AL046581 testis .n 1 to 357 1 to 357   tiling clone, AAA Submitted on the opposite strand 357/358
(99 %)
7 diff
(98.1 %id)
AA677243 liver and spleen .n 35 to 477 1 to 443   tiling clone, Submitted on the opposite strand 443/443
(100 %)
0 diff
(100 %id)
AL046580 testis .n 742 to 1045 305 to 1   tiling clone, Submitted on the opposite strand 305/305
(100 %)
5 diff
(98.4 %id)
CN334537 embryonic stem cells, DMSO-treated H9 cellline .o-u 1 to 623 1 to 624 exact tiling clone,   624/624
(100 %)
2 diff
(99.7 %id)
CD643584 Embryonic Stem cells .o-u 76 to 796 9 to 729   tiling clone,   721/730
(98 %)
6 diff
(99.2 %id)
BF899636 marrow .o-u 157 to 538 382 to 1     Submitted on the opposite strand 382/382
(100 %)
3 diff
(99.3 %id)
T81605 liver and spleen .o-u 234 to 516 1 to 290       290/290
(100 %)
8 diff
(97.3 %id)
BX955958   .p-u 1 to 660 1 to 660 exact tiling clone,   660/660
(100 %)
0 diff
(100 %id)
BM150634 leukopheresis .q 1 to 344 362 to 19 L10H tiling clone, AAA   344/344
(100 %)
13 diff
(96.3 %id)
BM836850 Ascites, stomach Gene FANCD2, variant not shown         This clone was ignored    
EC450270 Prostate Gene FANCD2, variant not shown         This clone was ignored    
R94933 liver and spleen Gene FANCD2, variant not shown         This clone was ignored    
R95017 liver and spleen Gene FANCD2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m, .n, .o-u, .p-u, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI