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Gene FANCATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
280 supporting clones for gene FANCA back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA608298   FANCA.a 1 to 564 4 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
NM_000135.2   FANCA.a 1 to 5458 3 to 5460 exact RefSeq,   5460/5460
(100 %)
0 diff
(100 %id)
AU099960   FANCA.a 1 to 297 2 to 300       300/300
(100 %)
6 diff
(98.0 %id)
DA327120 hippocampus FANCA.a 1 to 462 2 to 463   capped   462/462
(100 %)
0 diff
(100 %id)
DA738632   FANCA.a 1 to 548 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
TI_59392318   FANCA.a 7 to 616 94 to 705       612/613
(99 %)
12 diff
(98.1 %id)
DB070765 testis FANCA.a 8 to 508 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
BM014328 breast, mammary adenocarcinoma, cell line FANCA.a 9 to 616 1 to 610       610/611
(99 %)
12 diff
(98.1 %id)
DB065809 testis FANCA.a 10 to 579 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
X99226   FANCA.a 10 to 5458 1 to 5448 G501S M717I tiling clone, AAA   5448/5448
(100 %)
3 diff
(100.0 %id)
DA755166   FANCA.a 11 to 551 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB068506 testis FANCA.a 11 to 498 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
BX363164   FANCA.a 21 to 822 36 to 836       797/839
(94 %)
11 diff
(98.7 %id)
BG724266 testis FANCA.a 21 to 704 1 to 684       684/684
(100 %)
13 diff
(98.1 %id)
BE549072 cervical carcinoma cell line, cervix FANCA.a 27 to 745 1 to 762   available from MGC,   682/814
(83 %)
65 diff
(92.1 %id)
BM546950 ovary (pool of 3) FANCA.a 37 to 934 1 to 906       906/1061
(85 %)
17 diff
(98.4 %id)
TI_1948215571   FANCA.a 40 to 636 130 to 732       599/1318
(45 %)
30 diff
(97.8 %id)
TI_1948216039   FANCA.a 40 to 569 131 to 662       528/1396
(37 %)
36 diff
(97.5 %id)
BT007366   FANCA.a 41 to 932 1 to 892       892/894
(99 %)
2 diff
(99.8 %id)
CV029857 mixed FANCA.a 41 to 685 1 to 646       646/646
(100 %)
3 diff
(99.6 %id)
EL735029 mixed FANCA.a 41 to 720 1 to 680       680/680
(100 %)
1 diff
(99.9 %id)
BG719578 testis FANCA.a 69 to 779 1 to 710       710/710
(100 %)
7 diff
(99.1 %id)
BE514494 Burkitt lymphoma, lymph FANCA.a 97 to 760 24 to 704       676/707
(95 %)
43 diff
(94.0 %id)
BE561544 Burkitt lymphoma, lymph FANCA.a 98 to 834 34 to 775       742/1181
(62 %)
35 diff
(97.1 %id)
BI227134 Burkitt lymphoma, lymph FANCA.a 114 to 836 1 to 729       731/750
(97 %)
51 diff
(93.2 %id)
BE732661 choriocarcinoma, placenta FANCA.a 135 to 681 1 to 548       548/550
(99 %)
6 diff
(99.0 %id)
BI223606 cervical carcinoma cell line, cervix FANCA.a 237 to 749 1 to 521       519/765
(67 %)
27 diff
(96.5 %id)
CB129458 cervix, Uterine FANCA.a 250 to 772 1 to 523       523/523
(100 %)
0 diff
(100 %id)
BP251238 hippocampus FANCA.a 251 to 834 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BI222514 cervical carcinoma cell line, cervix FANCA.a 254 to 1011 1 to 755       757/755
(100 %)
6 diff
(99.3 %id)
DB095231 testis FANCA.a 666 to 1219 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
AW796487 uterus FANCA.a 679 to 1096 420 to 1       420/420
(100 %)
5 diff
(98.9 %id)
BQ957744 large cell carcinoma, lung FANCA.a 693 to 1511 26 to 847       822/970
(84 %)
32 diff
(96.8 %id)
BQ949613 large cell carcinoma, lung FANCA.a 695 to 1607 1 to 918       918/922
(99 %)
9 diff
(99.1 %id)
AA806380 germinal center B cell FANCA.a 772 to 1209 9 to 445     Submitted on the opposite strand 437/437
(100 %)
4 diff
(99.1 %id)
DB293917   FANCA.a 788 to 1393 2 to 607   capped   606/606
(100 %)
3 diff
(99.6 %id)
AW978243   FANCA.a 827 to 1243 1 to 418       419/418
(100 %)
6 diff
(98.6 %id)
DA099124 cerebellum FANCA.a 867 to 1362 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
AW851093 colon FANCA.a 883 to 1388 1 to 506       506/506
(100 %)
2 diff
(99.7 %id)
AW851086 colon FANCA.a 885 to 1542 19 to 676       658/676
(97 %)
7 diff
(99.0 %id)
AW850946 colon FANCA.a 889 to 1388 1 to 500       500/500
(100 %)
2 diff
(99.6 %id)
AW851085 colon FANCA.a 889 to 1478 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
BF334106 colon FANCA.a 889 to 1368 1 to 480       480/480
(100 %)
1 diff
(99.8 %id)
AA071064   FANCA.a 1001 to 1412 1 to 413       413/416
(99 %)
8 diff
(98.1 %id)
DW428473 Liver FANCA.a 1020 to 1278 17 to 275       259/275
(94 %)
7 diff
(97.5 %id)
DB092570 testis FANCA.a 1131 to 1684 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BQ424184 eye, retinoblastoma FANCA.a 1447 to 2192 1 to 749   tiling clone,   749/918
(81 %)
10 diff
(99.0 %id)
BQ434421 eye, retinoblastoma FANCA.a 1447 to 2054 1 to 611       611/903
(67 %)
13 diff
(98.6 %id)
BG423693 Kidney, renal cell adenocarcinoma FANCA.a 1581 to 2263 1 to 682       682/922
(73 %)
12 diff
(98.7 %id)
BE891556 melanotic melanoma, skin FANCA.a 1635 to 2338 1 to 702       702/767
(91 %)
6 diff
(99.3 %id)
BE792714 lung, small cell carcinoma FANCA.a 1681 to 2267 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BE798323 lung, small cell carcinoma FANCA.a 1750 to 2500 15 to 765       758/905
(83 %)
20 diff
(97.8 %id)
DB455696 testis FANCA.a 1766 to 2250 1 to 485       485/485
(100 %)
0 diff
(100 %id)
BP419524 small intestine FANCA.a 1878 to 2401 1 to 525   tiling clone, Submitted on the opposite strand 525/525
(100 %)
4 diff
(99.3 %id)
AW390175 stomach FANCA.a 1935 to 2330 396 to 3       394/396
(99 %)
1 diff
(99.8 %id)
BU430850 lymph FANCA.a 2102 to 2393 1 to 292       292/292
(100 %)
5 diff
(98.3 %id)
TI_154152358   FANCA.a 2109 to 2645 80 to 617       538/543
(99 %)
20 diff
(96.4 %id)
BF094654 uterus_tumor FANCA.a 2151 to 2462 25 to 349       325/349
(93 %)
21 diff
(94.0 %id)
BF094706 uterus_tumor FANCA.a 2151 to 2462 18 to 328       311/328
(94 %)
7 diff
(97.9 %id)
BF380200 uterus_tumor FANCA.a 2151 to 2462 25 to 349       325/349
(93 %)
21 diff
(94.0 %id)
AW504881 lymph FANCA.a 2159 to 2660 1 to 502       502/502
(100 %)
6 diff
(98.9 %id)
TI_154161201   FANCA.a 2166 to 2825 77 to 731       655/736
(88 %)
24 diff
(96.8 %id)
BI088358 cervix FANCA.a 2196 to 2897 1 to 709       709/1010
(70 %)
16 diff
(98.5 %id)
BM016954 astrocytoma grade IV, cell line, brain FANCA.a 2211 to 2886 1 to 675       675/680
(99 %)
18 diff
(97.4 %id)
TI_59387193   FANCA.a 2212 to 2886 59 to 732       674/679
(99 %)
17 diff
(97.5 %id)
BF818905 colon_ins FANCA.a 2408 to 2806 17 to 414       398/414
(96 %)
8 diff
(98.1 %id)
CA454074   FANCA.a 2442 to 3280 1 to 846       846/858
(98 %)
11 diff
(98.8 %id)
CN404736 embryonic stem cells, cell lines H1, H7, andH9 FANCA.a 2472 to 3052 21 to 601       581/601
(96 %)
6 diff
(99.1 %id)
DB132353 thymus FANCA.a 2631 to 3160 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA112249 cerebellum FANCA.a 2642 to 3213 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP301705   FANCA.a 2654 to 3234 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BM921852 pooled brain, lung, testis FANCA.a 2686 to 3563 1 to 880       880/964
(91 %)
8 diff
(99.2 %id)
DA374628 thalamus FANCA.a 2688 to 3222 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DR760574 embryonic stem FANCA.a 2720 to 3550 1 to 831       831/831
(100 %)
4 diff
(99.6 %id)
ES315203 occipital scalp hair, skin FANCA.a 2772 to 2909 1 to 138       138/138
(100 %)
0 diff
(100 %id)
AU127015   FANCA.a 2783 to 3540 2 to 768   capped   767/846
(90 %)
27 diff
(96.9 %id)
AW651715 cervical carcinoma cell line, cervix FANCA.a 2785 to 3355 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
BF772394 epid_tumor FANCA.a 2815 to 3168 354 to 1     Submitted on the opposite strand 354/362
(97 %)
5 diff
(98.7 %id)
BG424159 Kidney, renal cell adenocarcinoma FANCA.a 2850 to 3575 1 to 723       723/723
(100 %)
9 diff
(98.8 %id)
AW797159 uterus FANCA.a 2926 to 3181 267 to 12       256/267
(95 %)
0 diff
(100 %id)
BX370004.
matches multiple genes
placenta, Placenta Cot 25-normalized FANCA.a 2927 to 3805 1 to 874     also hits gene TTC13 874/874
(100 %)
20 diff
(97.8 %id)
AW602676 breast FANCA.a 2967 to 3388 460 to 36       425/460
(92 %)
7 diff
(98.5 %id)
AW502745 lymph FANCA.a 3132 to 3491 1 to 360       360/360
(100 %)
4 diff
(98.9 %id)
CF143554 lymph FANCA.a 3132 to 3510 1 to 379       379/379
(100 %)
4 diff
(99.0 %id)
TI_154158431   FANCA.a 3139 to 3669 84 to 615       532/536
(99 %)
14 diff
(97.4 %id)
TI_154174994   FANCA.a 3139 to 3530 80 to 471       392/392
(100 %)
0 diff
(100 %id)
DB171632 kidney, tumor tissue FANCA.a 3183 to 3588 2 to 408   capped   407/407
(100 %)
2 diff
(99.6 %id)
CB150064 Liver FANCA.a 3185 to 3733 1 to 549       549/549
(100 %)
0 diff
(100 %id)
R07213 liver and spleen FANCA.a 3194 to 3474 1 to 282       282/283
(99 %)
8 diff
(97.2 %id)
CX785868 human embryonic stem cells FANCA.a 3259 to 4128 25 to 894       870/894
(97 %)
6 diff
(99.4 %id)
BU171044 eye, retinoblastoma FANCA.a 3330 to 4195 1 to 868       868/872
(99 %)
10 diff
(98.9 %id)
AA432206   FANCA.a 3335 to 3830 1 to 494       494/494
(100 %)
3 diff
(99.4 %id)
CN404734 embryonic stem cells, DMSO-treated H9 cellline FANCA.a 3345 to 3860 9 to 524       516/524
(98 %)
6 diff
(98.9 %id)
BG036552 adenocarcinoma, cell line, Prostate FANCA.a 3370 to 4052 1 to 682       682/919
(74 %)
9 diff
(99.1 %id)
BP264597 umbilical vein FANCA.a 3385 to 3939 1 to 555       555/555
(100 %)
5 diff
(99.1 %id)
BQ427522 leiomyosarcoma, uterus FANCA.a 3387 to 4234 1 to 849       849/849
(100 %)
2 diff
(99.8 %id)
BM854554 stomach FANCA.a 3534 to 3979 1 to 446       446/446
(100 %)
0 diff
(100 %id)
BG678673 skin, squamous cell carcinoma FANCA.a 3568 to 4365 1 to 790       790/790
(100 %)
19 diff
(97.6 %id)
BF737173 bladder_tumor FANCA.a 3613 to 3974 382 to 22     Submitted on the opposite strand 361/382
(94 %)
0 diff
(100 %id)
BU161914 melanotic melanoma, skin FANCA.a 3623 to 4451 44 to 894       851/894
(95 %)
63 diff
(93.0 %id)
BY799118 eye FANCA.a 3624 to 4206 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BF771923 epid_tumor FANCA.a 3636 to 4013 379 to 2     Submitted on the opposite strand 379/388
(97 %)
9 diff
(97.7 %id)
BQ051638 blood, natural killer cells, cell line FANCA.a 3687 to 4501 1 to 815   AAA   815/815
(100 %)
7 diff
(99.2 %id)
DA682757   FANCA.a 3730 to 4530 2 to 801   capped   800/800
(100 %)
7 diff
(99.2 %id)
CA309327 Alveolar Macrophage, lung FANCA.a 3747 to 4501 770 to 16   AAA   755/755
(100 %)
0 diff
(100 %id)
TI_227715718   FANCA.a 3812 to 4501 59 to 748   AAA Submitted on the opposite strand 690/748
(92 %)
6 diff
(99.2 %id)
CD366831 Alveolar Macrophage, lung FANCA.a 3823 to 4485 11 to 673     Submitted on the opposite strand 663/663
(100 %)
0 diff
(100 %id)
BQ574517 Chondrosarcoma Grade II, Left Pelvis FANCA.a 3835 to 4501 685 to 19   AAA   667/667
(100 %)
0 diff
(100 %id)
AW007462 anaplastic oligodendroglioma, brain FANCA.a 3869 to 4501 634 to 1       634/715
(88 %)
16 diff
(97.8 %id)
TI_154123794   FANCA.a 3901 to 4603 785 to 92   AAA   694/916
(75 %)
16 diff
(98.3 %id)
AW673176 cervical carcinoma cell line, cervix FANCA.a 3938 to 4487 550 to 1       550/550
(100 %)
9 diff
(98.4 %id)
AA207089 germinal center B cell FANCA.a 3972 to 4491 1 to 540       540/540
(100 %)
28 diff
(94.9 %id)
AA207063 germinal center B cell FANCA.a 3974 to 4339 518 to 150   AAA   369/517
(71 %)
3 diff
(99.5 %id)
AW613272 2 pooled high-grade transitional celltumors, genitourinary tract FANCA.a 3974 to 4501 539 to 12   AAA   528/534
(98 %)
3 diff
(99.5 %id)
AI350700 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus FANCA.a 3975 to 4499 522 to 1       522/534
(97 %)
8 diff
(98.6 %id)
AW304189 lung, two pooled squamous cell carcinomas FANCA.a 3978 to 4502 525 to 1       525/544
(96 %)
9 diff
(98.4 %id)
AW117979 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus FANCA.a 3986 to 4501 526 to 15   AAA   512/565
(90 %)
11 diff
(98.1 %id)
AI262668 adenocarcinoma, colon FANCA.a 3998 to 4487 485 to 1       485/485
(100 %)
22 diff
(95.5 %id)
AI273377 adenocarcinoma, colon FANCA.a 4002 to 4487 488 to 1       488/493
(98 %)
4 diff
(99.2 %id)
AI280199 adenocarcinoma, colon FANCA.a 4004 to 4487 485 to 1       485/487
(99 %)
8 diff
(98.4 %id)
AI096836 uterus FANCA.a 4007 to 4499 493 to 1       493/493
(100 %)
1 diff
(99.8 %id)
AI273376 adenocarcinoma, colon FANCA.a 4025 to 4487 463 to 1       463/463
(100 %)
3 diff
(99.4 %id)
AI150578   FANCA.a 4029 to 4518 498 to 9       490/499
(98 %)
1 diff
(99.8 %id)
AI093382 uterus FANCA.a 4031 to 4499 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AA699308 liver and spleen FANCA.a 4040 to 4502 463 to 1       463/472
(98 %)
0 diff
(100 %id)
AA830183 germinal center B cell FANCA.a 4042 to 4492 454 to 5       450/465
(96 %)
4 diff
(99.2 %id)
CA415730 Chondrosarcoma Cell line FANCA.a 4064 to 4603 557 to 17   AAA   541/541
(100 %)
1 diff
(99.9 %id)
BF512590   FANCA.a 4066 to 4487 439 to 18   AAA   422/422
(100 %)
1 diff
(99.8 %id)
AA071065   FANCA.a 4068 to 4497 430 to 1       430/432
(99 %)
2 diff
(99.6 %id)
AA765197 germinal center B cell FANCA.a 4073 to 4492 424 to 5       420/424
(99 %)
5 diff
(98.9 %id)
DW410773 Liver FANCA.a 4075 to 4392 13 to 332       320/332
(96 %)
6 diff
(98.2 %id)
AA429596   FANCA.a 4088 to 4513 430 to 4       427/430
(99 %)
2 diff
(99.6 %id)
DB521130 testis FANCA.a 4089 to 4517 1 to 429     Submitted on the opposite strand 429/429
(100 %)
3 diff
(99.4 %id)
AI968318 pooled germ cell tumors FANCA.a 4142 to 4501 360 to 1       360/360
(100 %)
0 diff
(100 %id)
AI561314 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors FANCA.a 4167 to 4491 325 to 1       325/329
(98 %)
1 diff
(99.7 %id)
AA282097 germinal center B cell FANCA.a 4183 to 4492 312 to 3       310/312
(99 %)
0 diff
(100 %id)
AA736769 germinal center B cell FANCA.a 4184 to 4472 303 to 15   AAA   289/289
(100 %)
0 diff
(100 %id)
R07162 liver and spleen FANCA.a 4207 to 4498 301 to 7       295/302
(97 %)
7 diff
(97.7 %id)
BG255791 adenocarcinoma, cell line, Prostate FANCA.a 4213 to 4507 1 to 295   AAA   295/295
(100 %)
0 diff
(100 %id)
AA644129 lung, lung carcinoma FANCA.a 4223 to 4604 387 to 7       381/387
(98 %)
1 diff
(99.8 %id)
CX782206 human embryonic stem cells FANCA.a 4224 to 5040 1 to 817       817/817
(100 %)
5 diff
(99.4 %id)
AW955884   FANCA.a 4525 to 5186 1 to 648       648/702
(92 %)
16 diff
(97.8 %id)
T35075 placenta FANCA.a 4525 to 4785 1 to 261       261/261
(100 %)
0 diff
(100 %id)
BG341224 B-cells, primary B-cells from tonsils (cell line) FANCA.a 4535 to 5149 1 to 615   tiling clone,   615/615
(100 %)
1 diff
(99.9 %id)
BE091103 breast FANCA.a 4544 to 4697 1 to 156       156/160
(97 %)
8 diff
(95.0 %id)
BF743478 breast FANCA.a 4605 to 4993 12 to 400       389/400
(97 %)
9 diff
(97.8 %id)
DB383861   FANCA.a 4904 to 5458 551 to 1       551/557
(98 %)
22 diff
(96.1 %id)
DB363789   FANCA.a 4909 to 5458 548 to 1       548/576
(95 %)
30 diff
(94.8 %id)
DB322568   FANCA.a 4966 to 5458 491 to 1       491/494
(99 %)
8 diff
(98.4 %id)
AK299282   FANCA.b 1 to 4600 2 to 4601 M717I tiling clone,   4601/4601
(100 %)
1 diff
(100.0 %id)
BX363133   FANCA.b 17 to 1020 1 to 999       999/1006
(99 %)
14 diff
(98.7 %id)
BX363132   FANCA.b 3444 to 4464 1016 to 1       1016/1023
(99 %)
34 diff
(96.7 %id)
BE562419 Burkitt lymphoma, lymph FANCA.b 3619 to 4328 26 to 727       702/728
(96 %)
16 diff
(97.9 %id)
BE397785 Burkitt lymphoma, lymph FANCA.b 3624 to 4294 28 to 697       670/707
(94 %)
7 diff
(99.1 %id)
BE562031 Burkitt lymphoma, lymph FANCA.b 3624 to 4417 30 to 822       793/861
(92 %)
22 diff
(97.5 %id)
BI226468 Burkitt lymphoma, lymph FANCA.b 3635 to 4496 1 to 892       770/896
(85 %)
29 diff
(96.8 %id)
BI226568 Burkitt lymphoma, lymph FANCA.b 3635 to 4223 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
BE513740 Burkitt lymphoma, lymph FANCA.b 3655 to 4335 1 to 681       681/710
(95 %)
10 diff
(98.6 %id)
BE396303 Burkitt lymphoma, lymph FANCA.b 3656 to 4424 1 to 771       769/893
(86 %)
16 diff
(98.3 %id)
BE562321 Burkitt lymphoma, lymph FANCA.b 3657 to 4447 55 to 838       783/936
(83 %)
27 diff
(97.2 %id)
BE268830 Burkitt lymphoma, lymph FANCA.b 3658 to 4249 1 to 598       598/600
(99 %)
17 diff
(97.2 %id)
CN404732 embryonic stem cells, cell lines H1, H7, andH9 FANCA.b 3742 to 4320 19 to 597       579/597
(96 %)
9 diff
(98.5 %id)
AW170465 cervix, tumor FANCA.b 3829 to 4480 652 to 1       652/652
(100 %)
2 diff
(99.7 %id)
CN404735 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 FANCA.b 3860 to 4495 10 to 645   AAA   634/645
(98 %)
6 diff
(99.1 %id)
BX359104 Placenta Cot 25-normalized FANCA.c 1 to 1035 1 to 1026   tiling clone,   1026/1049
(97 %)
23 diff
(97.9 %id)
BE938511 testis_normal FANCA.c 2021 to 2294 94 to 367   tiling clone,   274/367
(74 %)
6 diff
(98.4 %id)
BX330449 Placenta Cot 25-normalized FANCA.c 2048 to 2792 744 to 1   tiling clone,   744/859
(86 %)
13 diff
(98.5 %id)
AL120228 amygdala FANCA.c 2743 to 3430 22 to 709   tiling clone, AAA Submitted on the opposite strand 688/709
(97 %)
6 diff
(99.2 %id)
AL120227 amygdala FANCA.c 3778 to 4521 744 to 1   tiling clone, Submitted on the opposite strand 744/748
(99 %)
3 diff
(99.6 %id)
DB135087 thymus FANCA.d 1 to 527 2 to 528   tiling clone, capped   527/527
(100 %)
0 diff
(100 %id)
BQ053057 blood, natural killer cells, cell line FANCA.d 318 to 1042 1 to 726   tiling clone,   725/960
(75 %)
24 diff
(97.5 %id)
BG981200 colon_normal FANCA.d 626 to 1043 1 to 415   tiling clone,   415/415
(100 %)
10 diff
(97.6 %id)
BE790858 lung, small cell carcinoma FANCA.d 655 to 1381 1 to 726   tiling clone,   726/966
(75 %)
7 diff
(99.3 %id)
DC301171 bladder FANCA.d 707 to 1278 1 to 572       572/572
(100 %)
0 diff
(100 %id)
AK301168 Spleen FANCA.d 730 to 2159 1 to 1430   tiling clone,   1430/1430
(100 %)
1 diff
(100.0 %id)
DC390486 Spleen FANCA.d 730 to 1310 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
DA370966 thalamus FANCA.d 2027 to 2585 2 to 560   tiling clone, capped   559/559
(100 %)
4 diff
(99.3 %id)
AA834448 adenocarcinoma, colon FANCA.d 2162 to 2508 1 to 344   tiling clone,   344/344
(100 %)
4 diff
(98.9 %id)
BF845315 head_neck FANCA.d 2419 to 2548 1 to 126   tiling clone,   126/129
(97 %)
7 diff
(94.6 %id)
TI_57237644   FANCA.e 1 to 927 28 to 962   tiling clone,   933/965
(96 %)
35 diff
(96.4 %id)
BI909883 leukocyte FANCA.e 4 to 927 1 to 932   tiling clone,   930/935
(99 %)
30 diff
(96.8 %id)
BG248513 adenocarcinoma cell line, colon FANCA.e 877 to 1602 1 to 720   tiling clone,   720/920
(78 %)
10 diff
(99.0 %id)
BG469463 adenocarcinoma cell line, colon FANCA.e 877 to 1598 1 to 724   tiling clone,   724/724
(100 %)
16 diff
(97.8 %id)
AA705568 liver and spleen FANCA.e 1370 to 1832 462 to 1   tiling clone,   462/462
(100 %)
2 diff
(99.6 %id)
AI052477 liver and spleen FANCA.e 1379 to 1832 454 to 1       454/454
(100 %)
1 diff
(99.8 %id)
BU845493 ovary, teratocarcinoma, cell line FANCA.f 1 to 918 1 to 919   tiling clone,   919/919
(100 %)
8 diff
(99.2 %id)
TI_57235469   FANCA.f 335 to 1213 32 to 910   tiling clone,   879/944
(93 %)
17 diff
(98.2 %id)
BI908441 leukocyte FANCA.f 336 to 1213 1 to 878   tiling clone,   878/912
(96 %)
11 diff
(98.8 %id)
BU857760 adenocarcinoma, cell line, breast FANCA.f 1110 to 1877 1 to 779   tiling clone,   779/913
(85 %)
16 diff
(98.3 %id)
BX355533 Neuroblastoma Cot 50-normalized FANCA.g 1 to 857 4 to 860   tiling clone,   860/860
(100 %)
7 diff
(99.2 %id)
CD358310 testis FANCA.g 575 to 1345 34 to 811   tiling clone,   778/908
(85 %)
16 diff
(98.3 %id)
CR612784 HeLa cells Cot 25-normalized FANCA.h 1 to 1694 1 to 1694 exact tiling clone,   1694/1694
(100 %)
0 diff
(100 %id)
BX342218   FANCA.h 1 to 845 1 to 844   fully sequenced,   844/844
(100 %)
7 diff
(99.2 %id)
BX401252   FANCA.h 782 to 1694 911 to 1   fully sequenced,   911/911
(100 %)
16 diff
(98.3 %id)
BC120979 PCR rescued clones FANCA.i 1 to 1088 1 to 1089 V6D tiling clone,   1089/1089
(100 %)
2 diff
(99.9 %id)
BC064540 Ovary, pooled from 3 adults FANCA.j 1 to 1636 3 to 1638 T266A available from MGC, AAA   1638/1638
(100 %)
4 diff
(99.8 %id)
BC141971 PCR rescued clones FANCA.j 1 to 1094 3 to 1096 T266A     1096/1096
(100 %)
1 diff
(100.0 %id)
BC141972 PCR rescued clones FANCA.j 1 to 1094 3 to 1096 exact tiling clone,   1096/1096
(100 %)
0 diff
(100 %id)
NM_001018112.1   FANCA.j 1 to 1654 3 to 1656 exact RefSeq, AAA   1656/1656
(100 %)
0 diff
(100 %id)
BC127633 PCR rescued clones FANCA.j 1 to 1094 2 to 1095 M160I     1095/1096
(99 %)
3 diff
(99.8 %id)
BC008979 Cervix, carcinoma FANCA.j 4 to 1654 1 to 1651 T266A tiling clone, available from MGC, AAA   1651/1651
(100 %)
3 diff
(99.9 %id)
AL539098 brain, fetal brain FANCA.j 12 to 787 1 to 779   fully sequenced,   775/775
(100 %)
4 diff
(99.5 %id)
CR601931 HeLa cells Cot 25-normalized FANCA.j 36 to 1624 1 to 1589 exact tiling clone,   1589/1589
(100 %)
0 diff
(100 %id)
BX384037   FANCA.j 36 to 864 1 to 826   fully sequenced,   826/826
(100 %)
3 diff
(99.7 %id)
BG122293 adenocarcinoma, cell line, Liver FANCA.j 423 to 1172 10 to 755       746/881
(84 %)
30 diff
(96.6 %id)
AW801695 uterus FANCA.j 583 to 999 420 to 2       419/420
(99 %)
4 diff
(99.1 %id)
CB145541 Liver FANCA.j 626 to 1037 1 to 413       413/413
(100 %)
4 diff
(99.1 %id)
CB147622 Liver FANCA.j 626 to 1046 1 to 421       421/421
(100 %)
2 diff
(99.6 %id)
AA353177   FANCA.j 724 to 998 1 to 274       274/274
(100 %)
2 diff
(99.3 %id)
AL539097 brain, fetal brain FANCA.j 757 to 1639 882 to 1   fully sequenced,   880/880
(100 %)
34 diff
(96.2 %id)
BX384036   FANCA.j 802 to 1624 823 to 1   fully sequenced,   823/823
(100 %)
4 diff
(99.6 %id)
BG716121 brain, hypothalamus FANCA.k 1 to 755 8 to 768   available from MGC,   768/899
(85 %)
42 diff
(95.4 %id)
BC022498 Brain, hypothalamus FANCA.k 1 to 2197 3 to 2199 A30V T249A tiling clone, available from MGC, AAA   2199/2199
(100 %)
10 diff
(99.6 %id)
DB068408 testis FANCA.k 614 to 1139 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
DB564195 hypothalamus FANCA.k 1543 to 2197 1 to 655     Submitted on the opposite strand 655/655
(100 %)
12 diff
(98.2 %id)
CA422110 cell lines, Chondrosarcoma FANCA.k 1584 to 2194 628 to 19   AAA   610/610
(100 %)
3 diff
(99.6 %id)
BI063377 uterus_tumor FANCA.k 1627 to 2272 1 to 646   tiling clone,   646/646
(100 %)
5 diff
(99.3 %id)
BY995664   FANCA.k 1688 to 2197 575 to 66   AAA Submitted on the opposite strand 510/510
(100 %)
4 diff
(99.3 %id)
BG008174 placenta_normal FANCA.k 1697 to 1931 237 to 3       235/238
(98 %)
0 diff
(100 %id)
BE503432 pooled germ cell tumors FANCA.k 1707 to 2174 468 to 1       468/468
(100 %)
3 diff
(99.4 %id)
BM768344 stomach FANCA.k 1744 to 2195 1 to 452   AAA   452/452
(100 %)
1 diff
(99.8 %id)
AI567090 ovary, tumor, 5 pooled (see description) FANCA.k 1767 to 2194 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
BI062384 uterus_tumor FANCA.k 1823 to 2515 693 to 1   tiling clone,   693/693
(100 %)
6 diff
(99.2 %id)
AA340375 brain FANCA.k 1921 to 2193 1 to 273       273/278
(98 %)
1 diff
(99.7 %id)
BQ441332 testis FANCA.k 1953 to 2195 1 to 243       243/279
(87 %)
2 diff
(99.3 %id)
AV686784 hepatocellular carcinoma FANCA.k 1960 to 2165 1 to 206   AAA   206/206
(100 %)
3 diff
(98.6 %id)
BC120978 PCR rescued clones FANCA.l 1 to 998 3 to 1000 exact tiling clone,   1000/1000
(100 %)
0 diff
(100 %id)
CD656606 Embryonic Stem cells FANCA.m 1 to 829 1 to 828 K212X L236P tiling clone,   828/828
(100 %)
8 diff
(99.1 %id)
BI820620 pooled brain, lung, testis FANCA.n 1 to 699 8 to 709   tiling clone,   709/715
(99 %)
22 diff
(97.0 %id)
TI_57197844   FANCA.n 1 to 699 102 to 803       709/809
(87 %)
25 diff
(97.0 %id)
BX114297 liver and spleen FANCA.n 616 to 1342 1 to 728   tiling clone,   728/728
(100 %)
1 diff
(99.9 %id)
AI554788 anaplastic oligodendroglioma, brain FANCA.n 1174 to 1869 695 to 2   tiling clone,   694/696
(99 %)
6 diff
(99.2 %id)
AI962930 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors FANCA.n 1258 to 1855 601 to 1       601/723
(83 %)
7 diff
(99.1 %id)
BI032183 marrow FANCA.o 1 to 410 22 to 431   tiling clone,   410/436
(94 %)
9 diff
(98.0 %id)
AW083279 colon, moderately differentiated adenocarcinoma FANCA.o 346 to 1038 687 to 1   tiling clone,   687/762
(90 %)
22 diff
(97.2 %id)
AW973554   FANCA.p 1 to 726 726 to 1 T2P E16K S29X tiling clone, Submitted on the opposite strand 726/726
(100 %)
2 diff
(99.8 %id)
DA857980 placenta FANCA.q 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
CN404731 embryonic stem cells, cell lines H1, H7, andH9 FANCA.q 515 to 1132 1 to 618   tiling clone,   618/618
(100 %)
0 diff
(100 %id)
AI569792 anaplastic oligodendroglioma, brain FANCA.q 1019 to 1596 578 to 1   tiling clone,   578/578
(100 %)
5 diff
(99.2 %id)
AI248603 liver and spleen FANCA.q 1103 to 1588 492 to 7   tiling clone,   486/492
(98 %)
0 diff
(100 %id)
AA826836 invasive tumor (cell line), Prostate FANCA.q 1136 to 1561 421 to 1   tiling clone,   421/421
(100 %)
13 diff
(97.0 %id)
T99041 liver and spleen FANCA.q 1248 to 1584 337 to 1       337/361
(93 %)
14 diff
(96.2 %id)
AI240702 liver and spleen FANCA.q 1269 to 1594 326 to 1       326/326
(100 %)
4 diff
(98.8 %id)
AA777444 liver and spleen FANCA.q 1414 to 1591 178 to 1       178/178
(100 %)
5 diff
(97.2 %id)
DR003058 fetal brain FANCA.r 1 to 644 1 to 643   tiling clone,   643/643
(100 %)
3 diff
(99.6 %id)
BU616925 Cell Line, Chondrosarcoma FANCA.r 536 to 1245 17 to 726   tiling clone, Submitted on the opposite strand 710/715
(99 %)
10 diff
(98.7 %id)
BF969936 adrenal cortex carcinoma, cell line, adrenal gland FANCA.s 1 to 762 1 to 773 G13X A154G H155T S156Q M157Y ... tiling clone,   773/1075
(71 %)
33 diff
(97.0 %id)
BM193622 leukopheresis FANCA.t 1 to 479 3 to 481 exact tiling clone,   481/482
(99 %)
1 diff
(99.8 %id)
AW604997 colon FANCA.u 1 to 461 462 to 1 R62K K131* tiling clone,   462/462
(100 %)
9 diff
(98.1 %id)
CR744166 liver and spleen FANCA.va 1 to 761 1 to 760 T40Q T42L H43T N44T L46* tiling clone,   760/760
(100 %)
5 diff
(99.4 %id)
T99040 liver and spleen FANCA.va 53 to 429 1 to 379     Submitted on the opposite strand 379/384
(98 %)
15 diff
(96.1 %id)
BF884853 lung_tumor FANCA.vb 1 to 508 1 to 506   tiling clone,   506/506
(100 %)
7 diff
(98.7 %id)
CB118948 Liver FANCA.vb 277 to 881 1 to 605   tiling clone,   605/605
(100 %)
1 diff
(99.9 %id)
DB183505 liver, tumor tissue FANCA.vb 412 to 978 2 to 569 exact tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
CA489402   FANCA.vc 1 to 811 1 to 816 exact tiling clone,   816/864
(94 %)
9 diff
(99.0 %id)
BF818259 colon_ins FANCA.vc 167 to 480 34 to 347       314/347
(90 %)
6 diff
(98.3 %id)
BE840830 stomach_normal FANCA.vd 1 to 133 18 to 151   tiling clone,   134/166
(80 %)
9 diff
(94.6 %id)
TI_154157388   FANCA.vd 13 to 496 80 to 563   tiling clone,   484/485
(99 %)
1 diff
(99.8 %id)
AL704470 human skeletal muscle FANCA.ve-u 1 to 525 1 to 525 exact tiling clone,   525/525
(100 %)
1 diff
(99.9 %id)
BG484069 lung FANCA.vf-u 1 to 732 1 to 726 I59V L66C P67L L68S S69A ... tiling clone,   726/730
(99 %)
12 diff
(98.4 %id)
R61618 whole brain FANCA.vg 1 to 417 1 to 419 P43L F44S A45L Y47T R48D ... tiling clone,   419/419
(100 %)
6 diff
(98.6 %id)
BF056231 pooled FANCA.vg 1044 to 1539 495 to 1   tiling clone,   495/495
(100 %)
1 diff
(99.8 %id)
AW663430 pooled FANCA.vg 1045 to 1527 486 to 5       482/486
(99 %)
0 diff
(100 %id)
AI520898 poorly differentiated adenocarcinoma withsignet ring cell features, stomach FANCA.vg 1072 to 1454 383 to 1       383/383
(100 %)
4 diff
(99.0 %id)
R60950 whole brain FANCA.vg 1110 to 1534 452 to 13   tiling clone, AAA   440/440
(100 %)
58 diff
(86.9 %id)
AA769930 pooled FANCA.vg 1179 to 1520 343 to 1       343/343
(100 %)
1 diff
(99.8 %id)
AW615754 lung, small cell carcinoma FANCA.vg 1185 to 1536 353 to 2       352/353
(99 %)
0 diff
(100 %id)
AI197817 anaplastic oligodendroglioma, brain FANCA.vg 1188 to 1534 347 to 1       347/347
(100 %)
0 diff
(100 %id)
BG956106 colon FANCA.vg 1195 to 1572 1 to 377   tiling clone,   377/445
(84 %)
10 diff
(97.8 %id)
DW414769 Liver FANCA.vg 1259 to 1526 17 to 284   AAA   268/284
(94 %)
6 diff
(97.9 %id)
C00203   FANCA.vg 1441 to 1534 1 to 94       94/94
(100 %)
0 diff
(100 %id)
BG955492 colon FANCA.vg 1486 to 1696 211 to 3   tiling clone,   209/211
(99 %)
0 diff
(100 %id)
CN404733 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 FANCA.vh 1 to 292 1 to 292 exact tiling clone,   292/292
(100 %)
0 diff
(100 %id)
CR978137 T-Lymphocytes FANCA.vi-u 1 to 828 1 to 832 exact tiling clone,   832/832
(100 %)
4 diff
(99.6 %id)
EL594375 epidermis, skin FANCA.vj-u 1 to 703 10 to 726 L2M G3V G4R G5R G6R ... tiling clone,   717/726
(98 %)
6 diff
(99.2 %id)
BE075228 breast FANCA.vk-u 1 to 402 23 to 427   tiling clone,   407/435
(93 %)
27 diff
(93.8 %id)
DA912528   FANCA.vk-u 1 to 546 2 to 548 exact tiling clone, capped   547/547
(100 %)
6 diff
(99.0 %id)
DA809927 brain FANCA.vl 1 to 528 2 to 529   tiling clone, capped   528/528
(100 %)
0 diff
(100 %id)
DB184902 liver, tumor tissue FANCA.vm 1 to 522 2 to 523 exact tiling clone, capped   522/522
(100 %)
1 diff
(99.9 %id)
AY339880   FANCA.vn 1 to 413 1 to 413 exact tiling clone,   413/413
(100 %)
1 diff
(99.8 %id)
AY339878   FANCA.vo 1 to 395 1 to 395 exact tiling clone,   395/395
(100 %)
1 diff
(99.8 %id)
AY339879   FANCA.vp-u 1 to 244 1 to 244 H55R tiling clone,   244/244
(100 %)
2 diff
(99.2 %id)
BE709026 head_neck Gene FANCA, variant not shown         This clone was ignored    
BF083892 colon Gene FANCA, variant not shown         Suspected internal deletion, this clone was ignored    
BI006280 kidney_tumor Gene FANCA, variant not shown              
BX481688   Gene FANCA, variant not shown       AAA Submitted on the opposite strand    
BX481689   Gene FANCA, variant not shown         Submitted on the opposite strand    
BP385729 pancreatic islet Gene FANCA, variant not shown         Submitted on the opposite strand    
AA243567 germinal center B cell Gene FANCA, variant not shown              
AA243568 germinal center B cell Gene FANCA, variant not shown              
AA577229 colon, colon tumor RER+ Gene FANCA, variant not shown              
AW502047 lymph Gene FANCA, variant not shown         This clone was ignored    
AW576031 lymph Gene FANCA, variant not shown       AAA This clone was ignored    
BG339013 leiomyosarcoma cell line, uterus Gene FANCA, variant not shown         This clone was ignored    
BU193492 eye, retinoblastoma Gene FANCA, variant not shown         Suspected internal deletion, this clone was ignored    
BP270960 small intestine Gene FANCA, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf-u, .vg, .vh, .vi-u, .vj-u, .vk-u, .vl, .vm, .vn, .vo, .vp-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI