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Gene FAM46ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
410 supporting clones for gene FAM46A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA568411 whole embryo, mainly head .a 1 to 632 2 to 634   tiling clone, capped   633/635
(99 %)
5 diff
(99.3 %id)
AK056057   .a 189 to 2231 8 to 2067 G65D S66F F67G H70G C71S ... available from FLJ,   2060/2060
(100 %)
12 diff
(99.5 %id)
DA686640   .a 189 to 709 8 to 530   capped   523/530
(98 %)
14 diff
(97.4 %id)
DA828414 placenta .a 212 to 867 2 to 691   capped   690/690
(100 %)
14 diff
(98.0 %id)
DA828942 placenta .a 214 to 896 2 to 710   capped   709/711
(99 %)
15 diff
(97.9 %id)
BC000683 Eye, retinoblastoma .a 227 to 1932 1 to 1706 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 1706/1706
(100 %)
0 diff
(100 %id)
BU180145 melanotic melanoma, cell line, skin .a 227 to 681 26 to 480       455/1033
(44 %)
14 diff
(98.7 %id)
BG437150 large cell carcinoma, lung .a 232 to 832 1 to 641       641/819
(78 %)
17 diff
(98.0 %id)
BQ949584 large cell carcinoma, lung .a 235 to 1140 1 to 922       922/922
(100 %)
12 diff
(98.7 %id)
BE253590 eye, retinoblastoma .a 246 to 1080 1 to 830       830/837
(99 %)
14 diff
(98.4 %id)
DB354926 whole embryo, mainly head .a 1393 to 1932 538 to 1       538/541
(99 %)
15 diff
(97.3 %id)
DB372934 placenta .a 1432 to 1932 500 to 1       500/502
(99 %)
22 diff
(95.7 %id)
DB373577 placenta .a 1432 to 1932 496 to 1       496/496
(100 %)
15 diff
(97.0 %id)
DB322954   .a 1635 to 2231 600 to 1   tiling clone,   600/600
(100 %)
4 diff
(99.4 %id)
CN358408 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1 to 531 1 to 531   tiling clone,   531/531
(100 %)
0 diff
(100 %id)
BP221089 colon .b 8 to 543 1 to 581       581/581
(100 %)
17 diff
(97.1 %id)
DA861679 placenta .b 9 to 540 2 to 563   capped   562/562
(100 %)
10 diff
(98.3 %id)
BQ437950 melanotic melanoma, skin .b 28 to 834 1 to 829       829/829
(100 %)
17 diff
(98.0 %id)
BP204544 coronary artery .b 39 to 617 1 to 580       580/583
(99 %)
8 diff
(98.7 %id)
BY795587 eye .b 53 to 524 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
AJ420592   .b 57 to 1567 9 to 1534 G46D S47F F48G H51G C52S ... AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 1526/1534
(99 %)
15 diff
(99.1 %id)
BM543868 ovary (pool of 3) .b 59 to 856 1 to 838       836/1123
(74 %)
38 diff
(96.7 %id)
BX382080 Placenta Cot 25-normalized .b 63 to 785 10 to 732   tiling clone,   723/732
(98 %)
6 diff
(99.2 %id)
AA188632   .b 85 to 535 1 to 467       467/467
(100 %)
14 diff
(97.1 %id)
BM839279 Ascites, stomach .b 108 to 412 1 to 320       320/320
(100 %)
10 diff
(96.9 %id)
AA188764   .b 1160 to 1568 413 to 1   tiling clone,   413/413
(100 %)
6 diff
(98.6 %id)
BM018008 astrocytoma grade IV, cell line, brain .c -10 to 702 1 to 730       730/1114
(65 %)
38 diff
(96.6 %id)
TI_59388589   .c -10 to 702 105 to 834       730/1114
(65 %)
38 diff
(96.6 %id)
AK292109 synovial membrane tissue from rheumatoidarthritis .c 1 to 1699 2 to 1700 exact tiling clone,   1700/1700
(100 %)
1 diff
(100.0 %id)
NM_017633.2   .c 1 to 5617 1 to 5617 exact RefSeq,   5617/5617
(100 %)
5 diff
(100.0 %id)
DA981608 synovial membrane tissue from rheumatioidarthritis .c 1 to 574 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BP377546 uterus .c 3 to 585 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
DA921233 small intestine .c 9 to 545 2 to 554   capped   553/553
(100 %)
10 diff
(98.2 %id)
BM752154 Ascites, stomach .c 12 to 119 1 to 108       108/108
(100 %)
3 diff
(97.3 %id)
BC007351 Skin, melanotic melanoma. .c 17 to 1699 1 to 1698 G46D S47F F48G H51G C52S ... available from MGC, AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 1698/1698
(100 %)
9 diff
(99.5 %id)
AW243203 Kidney .c 21 to 247 227 to 1       227/227
(100 %)
0 diff
(100 %id)
BP341785 stomach mucosa .c 30 to 587 1 to 573       573/573
(100 %)
11 diff
(98.1 %id)
BP207754 coronary artery .c 31 to 581 1 to 566       566/566
(100 %)
13 diff
(97.8 %id)
DB030187 testis .c 31 to 563 2 to 549   capped   548/548
(100 %)
9 diff
(98.4 %id)
BP375237 umbilical cord .c 31 to 613 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA084652 cerebellum .c 32 to 524 2 to 511   capped   510/510
(100 %)
11 diff
(97.9 %id)
DA660244   .c 32 to 608 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA839745 placenta .c 32 to 572 2 to 557   capped   556/556
(100 %)
9 diff
(98.4 %id)
DA841897 placenta .c 32 to 552 2 to 552   capped   551/551
(100 %)
9 diff
(98.4 %id)
AK000044 colon .c 33 to 1699 1 to 1682 G46D S47F F48G H51G C52S ... available from FLJ, AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 1682/1682
(100 %)
12 diff
(99.3 %id)
BP255067 Kidney .c 33 to 599 1 to 582       582/582
(100 %)
10 diff
(98.3 %id)
CB116459 Liver .c 33 to 411 1 to 379       379/379
(100 %)
1 diff
(99.8 %id)
DA830832 placenta .c 33 to 686 2 to 672   capped   671/674
(99 %)
13 diff
(98.1 %id)
BP373231 umbilical cord .c 33 to 613 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP376234 uterus .c 33 to 594 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DA021411   .c 34 to 581 2 to 564   capped   563/563
(100 %)
9 diff
(98.5 %id)
DA646736 mammary gland .c 34 to 691 2 to 659   capped   658/658
(100 %)
3 diff
(99.6 %id)
DA829197 placenta .c 34 to 530 2 to 515   capped   514/514
(100 %)
13 diff
(97.5 %id)
DA842434 placenta .c 34 to 588 2 to 571   capped   570/570
(100 %)
10 diff
(98.3 %id)
DA846357 placenta .c 34 to 557 2 to 540   capped   539/539
(100 %)
10 diff
(98.2 %id)
DA850001 placenta .c 34 to 564 2 to 562   capped   561/561
(100 %)
9 diff
(98.4 %id)
BP375508 uterus .c 35 to 616 1 to 582       582/582
(100 %)
12 diff
(98.0 %id)
BF025838 melanotic melanoma, skin .c 36 to 688 1 to 661       661/791
(83 %)
14 diff
(98.3 %id)
DB291421 uterus .c 36 to 617 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BM555904 amelanotic melanoma, cell line, skin .c 41 to 861 1 to 842       842/1188
(70 %)
19 diff
(98.5 %id)
BM915335 amelanotic melanoma, cell line, skin .c 42 to 879 1 to 856       856/1059
(80 %)
17 diff
(98.4 %id)
TI_151720936   .c 44 to 659 120 to 765     Submitted on the opposite strand 646/891
(72 %)
19 diff
(97.9 %id)
CN314929 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 48 to 333 1 to 286       286/286
(100 %)
3 diff
(99.0 %id)
BG438083 large cell carcinoma, lung .c 50 to 851 1 to 794       794/794
(100 %)
26 diff
(96.8 %id)
ES309695 occipital hair of pubic hypotrichosispatient, skin .c 52 to 662 28 to 653       626/719
(87 %)
17 diff
(97.7 %id)
DN998891 bone marrow .c 53 to 599 8 to 569       562/645
(87 %)
19 diff
(97.1 %id)
BF027256 melanotic melanoma, skin .c 64 to 790 1 to 740       740/740
(100 %)
12 diff
(98.4 %id)
AI394673 B-cell, chronic lymphotic leukemia .c 67 to 275 209 to 1       209/209
(100 %)
0 diff
(100 %id)
BE407162 choriocarcinoma, placenta .c 69 to 834 1 to 778       778/779
(99 %)
14 diff
(98.3 %id)
BE408498 choriocarcinoma, placenta .c 69 to 685 1 to 632       632/632
(100 %)
9 diff
(98.6 %id)
BF000637 colon, colon tumor, RER+ .c 72 to 182 112 to 1       112/112
(100 %)
3 diff
(97.4 %id)
AI167162 pooled .c 268 to 738 1 to 471     Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
AI240225 pooled .c 268 to 841 1 to 583     Submitted on the opposite strand 583/583
(100 %)
18 diff
(97.0 %id)
BF061666 fibrotheoma, ovary .c 268 to 770 1 to 503     Submitted on the opposite strand 503/503
(100 %)
0 diff
(100 %id)
BF433481 carcinoid, lung .c 269 to 717 1 to 449     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
AA526820 normal prostate, Prostate .c 299 to 969 1 to 655     Submitted on the opposite strand 655/666
(98 %)
31 diff
(95.4 %id)
TI_1948079060   .c 318 to 1094 128 to 916       789/1148
(68 %)
25 diff
(97.9 %id)
TI_1948079061   .c 318 to 1285 138 to 1104       967/1394
(69 %)
28 diff
(98.0 %id)
TI_1948079401   .c 318 to 1201 128 to 1018       891/1402
(63 %)
22 diff
(98.5 %id)
TI_1948079749   .c 318 to 1037 128 to 867       740/1161
(63 %)
27 diff
(97.7 %id)
TI_1948080106   .c 318 to 1108 128 to 934       807/1359
(59 %)
40 diff
(97.1 %id)
TI_1948093689   .c 318 to 871 128 to 681       554/1214
(45 %)
1 diff
(100.0 %id)
TI_1948093850   .c 318 to 1042 127 to 862   fully sequenced,   736/862
(85 %)
28 diff
(96.8 %id)
TI_1948094018   .c 318 to 1105 126 to 928   fully sequenced,   803/928
(86 %)
63 diff
(93.3 %id)
TI_1948094188   .c 318 to 939 125 to 757   fully sequenced,   633/757
(83 %)
6 diff
(99.3 %id)
AY740520   .c 319 to 1647 1 to 1344 G46D S47F F48G H51G C52S ...     1344/1344
(100 %)
11 diff
(99.2 %id)
CV025553 mixed .c 319 to 954 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
CV027211 mixed .c 319 to 910 1 to 607       607/607
(100 %)
9 diff
(98.6 %id)
BQ217344 large cell carcinoma, lung .c 442 to 1260 1 to 828       828/932
(88 %)
19 diff
(98.0 %id)
BQ267248 insulinoma, Pancreas .c 452 to 871 1 to 420     Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 420/428
(98 %)
5 diff
(98.9 %id)
BM511169 insulinoma, Pancreas .c 453 to 653 1 to 201       201/202
(99 %)
20 diff
(90.1 %id)
AA307149 colon .c 488 to 905 12 to 434       423/434
(97 %)
6 diff
(98.7 %id)
TI_1948080107   .c 517 to 1655 1241 to 119       1123/1299
(86 %)
55 diff
(95.8 %id)
TI_1948079402   .c 569 to 1655 1210 to 119       1092/1319
(82 %)
37 diff
(97.2 %id)
TI_1948079062   .c 627 to 1655 1140 to 119       1022/1293
(79 %)
35 diff
(97.3 %id)
BU075845 insulinoma, Pancreas .c 631 to 960 253 to 584       332/584
(56 %)
6 diff
(99.0 %id)
BQ636358 eye, retina .c 634 to 1156 1 to 523       523/523
(100 %)
1 diff
(99.9 %id)
BF475986 Prostate .c 645 to 981 1 to 337     Submitted on the opposite strand 337/337
(100 %)
8 diff
(97.7 %id)
R69202 placenta .c 671 to 940 273 to 1     Submitted on the opposite strand 273/386
(70 %)
5 diff
(98.8 %id)
TI_1948079751   .c 710 to 1655 1064 to 117       948/1306
(72 %)
15 diff
(98.9 %id)
R26344 placenta .c 741 to 1093 362 to 3     Submitted on the opposite strand 360/363
(99 %)
9 diff
(97.6 %id)
BX369333 Placenta Cot 25-normalized .c 786 to 1695 1 to 910   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 910/914
(99 %)
11 diff
(98.8 %id)
BX369334 Placenta Cot 25-normalized .c 786 to 1695 1 to 908   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 908/911
(99 %)
18 diff
(98.1 %id)
BX369340.
matches multiple genes
placenta, Placenta Cot 25-normalized .c 788 to 1126 1 to 344   fully sequenced, also hits gene potabu 344/362
(95 %)
34 diff
(90.7 %id)
AV749860 Pituitary .c 809 to 1149 1 to 332       332/338
(98 %)
6 diff
(98.3 %id)
TI_1948080108   .c 862 to 1655 900 to 113       788/1115
(70 %)
33 diff
(97.1 %id)
BU194084 melanotic melanoma, skin .c 868 to 1699 866 to 35   AAA Submitted on the opposite strand 832/832
(100 %)
0 diff
(100 %id)
TI_1948079063   .c 869 to 1655 891 to 113       779/1114
(69 %)
19 diff
(98.3 %id)
TI_1948079752   .c 869 to 1655 889 to 114       776/1099
(70 %)
24 diff
(97.9 %id)
TI_1948093690   .c 869 to 1655 903 to 118       786/1236
(63 %)
8 diff
(99.4 %id)
AW391612 stomach .c 900 to 1471 1 to 568       568/568
(100 %)
13 diff
(97.8 %id)
TI_1948094189   .c 909 to 1655 865 to 116   fully sequenced,   750/865
(86 %)
15 diff
(98.3 %id)
CA308095 Alveolar Macrophage, lung .c 936 to 1699 775 to 17   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 759/759
(100 %)
5 diff
(99.4 %id)
BF182650 large cell carcinoma, lung .c 965 to 1697 1 to 727   AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 727/727
(100 %)
15 diff
(98.0 %id)
AA551498 thyroid .c 978 to 1358 1 to 381       381/384
(99 %)
7 diff
(98.2 %id)
BQ445948 Knee, Osteoarthritic Cartilage .c 979 to 1687 725 to 17   AAA   709/709
(100 %)
0 diff
(100 %id)
AW971264   .c 982 to 1256 57 to 332       276/332
(83 %)
6 diff
(98.2 %id)
CB069007 Pancreas, Purified pancreatic islet .c 989 to 1433 1 to 445   fully sequenced,   445/445
(100 %)
0 diff
(100 %id)
AA486012   .c 991 to 1356 1 to 365   fully sequenced,   365/365
(100 %)
1 diff
(99.8 %id)
BG929182 cartilage .c 1034 to 1565 67 to 598       532/549
(96 %)
6 diff
(99.0 %id)
TI_1948093851   .c 1038 to 1655 732 to 115   fully sequenced,   618/732
(84 %)
30 diff
(96.0 %id)
TI_1948079403   .c 1053 to 1655 728 to 114       615/1181
(52 %)
39 diff
(96.7 %id)
TI_1948094019   .c 1075 to 1655 702 to 117   fully sequenced,   586/702
(83 %)
8 diff
(98.9 %id)
BM510919 insulinoma, Pancreas .c 1090 to 1637 550 to 3       548/550
(99 %)
0 diff
(100 %id)
BQ272503 insulinoma, Pancreas .c 1096 to 1697 617 to 16   AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 602/602
(100 %)
0 diff
(100 %id)
AA176854   .c 1102 to 1407 1 to 309   fully sequenced,   309/309
(100 %)
3 diff
(99.1 %id)
AW246673 lung, small cell carcinoma .c 1163 to 1709 547 to 1       547/556
(98 %)
0 diff
(100 %id)
BF094322 uterus_tumor .c 1171 to 1552 1 to 382       382/382
(100 %)
31 diff
(91.9 %id)
BE466469 Kidney .c 1180 to 1705 526 to 1       526/526
(100 %)
6 diff
(98.9 %id)
DB361479 mammary gland .c 1188 to 1699 507 to 1       507/539
(94 %)
11 diff
(98.0 %id)
BQ024174 placenta .c 1196 to 1699 520 to 17   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 504/512
(98 %)
0 diff
(100 %id)
BP397824 pancreatic islet .c 1200 to 1699 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
BF828656 head_normal .c 1215 to 1341 9 to 133       125/135
(92 %)
8 diff
(94.1 %id)
BQ631697 Pancreas, Purified pancreatic islet .c 1222 to 1654 1 to 433   fully sequenced, AAA   433/433
(100 %)
0 diff
(100 %id)
DW413778 Liver .c 1223 to 1520 16 to 319       304/319
(95 %)
6 diff
(98.2 %id)
BM147465 leukopheresis .c 1228 to 1722 1 to 495       495/495
(100 %)
2 diff
(99.6 %id)
BM149306 leukopheresis .c 1228 to 1730 1 to 501       501/501
(100 %)
11 diff
(97.9 %id)
BM150100 leukopheresis .c 1228 to 1750 1 to 522       522/522
(100 %)
6 diff
(98.9 %id)
DB373918 placenta .c 1237 to 1699 465 to 1       465/465
(100 %)
11 diff
(97.7 %id)
BP395629 pancreatic islet .c 1242 to 1704 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
BP398001 pancreatic islet .c 1242 to 1699 1 to 458     Submitted on the opposite strand 458/458
(100 %)
1 diff
(99.8 %id)
AA564797 adrenal adenoma, adrenal gland .c 1246 to 1704 459 to 1       459/459
(100 %)
0 diff
(100 %id)
DB376180 placenta .c 1246 to 1699 452 to 1       452/538
(84 %)
16 diff
(97.1 %id)
BP257192 heart .c 1250 to 1820 1 to 574       574/574
(100 %)
8 diff
(98.7 %id)
W39616 parathyroid gland, parathyroid tumor .c 1260 to 1687 431 to 2     Submitted on the opposite strand 430/431
(99 %)
0 diff
(100 %id)
BF435870 pooled .c 1264 to 1699 436 to 1       436/442
(98 %)
3 diff
(99.4 %id)
BM854524 stomach .c 1288 to 1699 1 to 412   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 412/412
(100 %)
0 diff
(100 %id)
BM829984 stomach .c 1288 to 1699 1 to 412   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 412/412
(100 %)
0 diff
(100 %id)
H65931 liver and spleen .c 1304 to 1632 29 to 359   fully sequenced,   331/359
(92 %)
11 diff
(97.0 %id)
H95448 placenta .c 1316 to 1535 228 to 1     Submitted on the opposite strand 228/243
(93 %)
9 diff
(96.3 %id)
AW444942   .c 1317 to 1699 398 to 16   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 383/393
(97 %)
0 diff
(100 %id)
AW386877 pnet .c 1318 to 1604 302 to 17       286/309
(92 %)
0 diff
(100 %id)
H13077 placenta .c 1320 to 1700 389 to 1     Submitted on the opposite strand 389/389
(100 %)
10 diff
(97.5 %id)
H87000 placenta .c 1323 to 1700 380 to 1     Submitted on the opposite strand 380/380
(100 %)
6 diff
(98.5 %id)
AA488632   .c 1326 to 1698 373 to 1   fully sequenced,   373/373
(100 %)
0 diff
(100 %id)
R68609 placenta .c 1335 to 1698 370 to 2     Submitted on the opposite strand 369/378
(97 %)
0 diff
(100 %id)
AJ346644 pectoral muscle (after mastectomy) .c 1342 to 1704 1 to 363       363/363
(100 %)
1 diff
(99.8 %id)
R67854 placenta .c 1344 to 1699 359 to 1     Submitted on the opposite strand 359/403
(89 %)
4 diff
(99.1 %id)
BF378757 uterus .c 1351 to 1676 344 to 19       326/344
(94 %)
0 diff
(100 %id)
BF356450 head_neck .c 1352 to 1616 5 to 271       267/276
(96 %)
12 diff
(95.7 %id)
BF084869 lung_normal .c 1357 to 1606 1 to 258       258/280
(92 %)
18 diff
(93.6 %id)
R93558 liver and spleen .c 1364 to 1703 1 to 346       346/349
(99 %)
10 diff
(97.2 %id)
N91087 liver and spleen .c 1364 to 1803 1 to 439   fully sequenced,   439/439
(100 %)
4 diff
(99.1 %id)
AA176656   .c 1377 to 1700 324 to 1   fully sequenced,   324/324
(100 %)
2 diff
(99.4 %id)
AA256577 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1388 to 1703 316 to 1     Submitted on the opposite strand 316/316
(100 %)
1 diff
(99.7 %id)
CB068845 Pancreas, Purified pancreatic islet .c 1403 to 1698 300 to 1   fully sequenced,   300/300
(100 %)
0 diff
(100 %id)
AA134291 colon, tumor .c 1413 to 1703 297 to 4       294/297
(98 %)
0 diff
(100 %id)
BP396854 pancreatic islet .c 1415 to 1706 1 to 292     Submitted on the opposite strand 292/292
(100 %)
0 diff
(100 %id)
BF759314 colon .c 1426 to 1565 145 to 7     Submitted on the opposite strand 139/145
(95 %)
0 diff
(100 %id)
AI886953 anaplastic oligodendroglioma, brain .c 1463 to 1708 247 to 1       247/247
(100 %)
1 diff
(99.6 %id)
DR979675 placenta .c 1464 to 1687 1 to 222   AAA Submitted on the opposite strand 222/222
(100 %)
3 diff
(98.7 %id)
BX486141   .c 1512 to 2061 1 to 550     Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 550/550
(100 %)
1 diff
(99.9 %id)
BI022798 marrow .c 1529 to 1753 1 to 226       226/244
(92 %)
18 diff
(92.7 %id)
BU536159 mixed (pool of 40 RNAs) .c 1529 to 1699 1 to 171   AAA Possibly primed on the genome, locally A rich (24/25 A in genome downstream of last aligned base) 171/171
(100 %)
2 diff
(98.9 %id)
H96357 placenta .c 1530 to 1700 171 to 1     Submitted on the opposite strand 171/171
(100 %)
0 diff
(100 %id)
AA757798 pineal gland .c 1532 to 1709 178 to 1       178/178
(100 %)
0 diff
(100 %id)
AI911017 pooled .c 1536 to 1997 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AA719328 pineal gland .c 1550 to 1995 446 to 1       446/446
(100 %)
0 diff
(100 %id)
BG149271 carcinoid, lung .c 1551 to 1986 1 to 436     Submitted on the opposite strand 436/436
(100 %)
7 diff
(98.4 %id)
BG153418 carcinoid, lung .c 1594 to 2001 409 to 1       409/409
(100 %)
12 diff
(97.1 %id)
H65844 liver and spleen .c 1604 to 2035 441 to 1   fully sequenced,   441/441
(100 %)
17 diff
(96.2 %id)
BQ631998 Pancreas, Purified pancreatic islet .c 1624 to 1997 376 to 1   fully sequenced,   376/376
(100 %)
2 diff
(99.5 %id)
AI022319 liver and spleen .c 1632 to 1998 367 to 1   tiling clone,   367/367
(100 %)
0 diff
(100 %id)
AA704517 liver and spleen .c 1636 to 2036 403 to 1       403/403
(100 %)
3 diff
(99.3 %id)
AW015324   .c 1638 to 1998 377 to 18   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 360/360
(100 %)
2 diff
(99.5 %id)
BE934761 head_neck .c 1656 to 1989 340 to 8       333/340
(97 %)
0 diff
(100 %id)
N63736 liver and spleen .c 1773 to 1998 224 to 1   fully sequenced,   224/224
(100 %)
3 diff
(98.7 %id)
AA305137 colon .c 1843 to 2282 1 to 439       439/439
(100 %)
1 diff
(99.8 %id)
AW952387   .c 1844 to 2510 1 to 669   tiling clone,   669/669
(100 %)
4 diff
(99.5 %id)
AA706872 liver and spleen .c 1854 to 2036 184 to 1       184/184
(100 %)
3 diff
(98.4 %id)
BQ378972 uterus_tumor .c 1862 to 2128 276 to 10       267/278
(96 %)
0 diff
(100 %id)
BG621393 placenta .c 1921 to 2434 1 to 516       516/517
(99 %)
5 diff
(99.1 %id)
BX486467   .c 2114 to 2317 1 to 204       204/206
(99 %)
2 diff
(99.1 %id)
R78250 placenta .c 2276 to 2707 1 to 440       440/440
(100 %)
16 diff
(96.4 %id)
BX486271   .c 2422 to 2899 1 to 478   tiling clone,   478/478
(100 %)
0 diff
(100 %id)
AA758442 pineal gland .c 2436 to 2856 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
DA424043   .c 2472 to 3029 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BX485982   .c 2497 to 2734 1 to 237       237/237
(100 %)
3 diff
(98.8 %id)
AV647023 corresponding non cancerous liver tissue .c 2509 to 3158 11 to 658     Submitted on the opposite strand 648/724
(89 %)
6 diff
(99.2 %id)
R28525 placenta .c 2519 to 2782 11 to 282   fully sequenced,   272/282
(96 %)
10 diff
(96.5 %id)
BQ024286 placenta .c 2601 to 3056 474 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 456/456
(100 %)
3 diff
(99.4 %id)
DA019911   .c 2627 to 3206 2 to 582   tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
R78251 placenta .c 2751 to 2985 235 to 1       235/235
(100 %)
0 diff
(100 %id)
R28669 placenta .c 2752 to 3055 308 to 1   fully sequenced,   308/308
(100 %)
5 diff
(98.4 %id)
BM146306 leukopheresis .c 2906 to 3291 1 to 386       386/386
(100 %)
10 diff
(97.5 %id)
BX489508   .c 2933 to 3217 30 to 314       285/314
(90 %)
6 diff
(98.1 %id)
DA039797 bladder .c 2940 to 3509 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
GD136293   .c 2944 to 3096 158 to 6     Submitted on the opposite strand 153/158
(96 %)
0 diff
(100 %id)
AJ420583   .c 2970 to 5611 10 to 2651   tiling clone, AAA   2642/2651
(99 %)
7 diff
(99.8 %id)
DA832824 placenta .c 2995 to 3743 2 to 757   capped   756/756
(100 %)
6 diff
(99.3 %id)
BG620844 placenta .c 3004 to 3723 1 to 729       729/792
(92 %)
22 diff
(97.3 %id)
H78723 liver and spleen .c 3097 to 3501 1 to 407       407/415
(98 %)
7 diff
(98.4 %id)
H78736 liver and spleen .c 3097 to 3464 1 to 370       370/379
(97 %)
3 diff
(99.3 %id)
DA736104   .c 3149 to 3961 2 to 810   capped   809/812
(99 %)
6 diff
(99.3 %id)
BX502345 Liver .c 3162 to 3653 1 to 492       492/492
(100 %)
0 diff
(100 %id)
DB009839 colon, tumor tissue .c 3292 to 3843 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
AA021540 eye, retina .c 3397 to 3581 1 to 185       185/185
(100 %)
0 diff
(100 %id)
DA829428 placenta .c 3419 to 4133 2 to 721   capped   720/784
(91 %)
10 diff
(98.8 %id)
DB245193 uterus, tumor tissue .c 3421 to 3970 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
H83654 eye, retina .c 3428 to 3828 1 to 414       414/417
(99 %)
16 diff
(96.2 %id)
DA467013 cord Blood .c 3449 to 4015 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
T73543 Liver .c 3474 to 3812 10 to 362       353/363
(97 %)
18 diff
(95.1 %id)
DB209998 trachea .c 3498 to 4058 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
CD722373 eye, lacrimal gland .c 3508 to 4113 1 to 606       606/606
(100 %)
2 diff
(99.7 %id)
AK096704 placenta .c 3526 to 5607 1 to 2082   available from FLJ,   2082/2082
(100 %)
1 diff
(100.0 %id)
DA835009 placenta .c 3527 to 4078 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA012110 adrenal gland .c 3563 to 3986 2 to 425   capped   424/424
(100 %)
0 diff
(100 %id)
BM807982 ovary (pool of 3) .c 3588 to 4179 6 to 597       592/1204
(49 %)
22 diff
(98.2 %id)
DA830299 placenta .c 3590 to 4362 2 to 782   capped   781/783
(99 %)
26 diff
(96.7 %id)
CD654615 Embryonic Stem cells .c 3606 to 4325 58 to 774       717/851
(84 %)
6 diff
(99.3 %id)
CB958838 Pooled-Glandular .c 3690 to 4388 1 to 705       705/743
(94 %)
12 diff
(98.4 %id)
CD722608 eye, lacrimal gland .c 3697 to 4310 1 to 614       614/614
(100 %)
2 diff
(99.7 %id)
BE782072 eye, retinoblastoma .c 3753 to 4251 33 to 544       512/982
(52 %)
6 diff
(99.4 %id)
FN080075 breast carcinoma .c 3807 to 3906 97 to 1     Submitted on the opposite strand 97/97
(100 %)
3 diff
(97.0 %id)
BG622030 placenta .c 3819 to 4662 1 to 853       853/899
(94 %)
44 diff
(95.2 %id)
H14652 whole brain .c 3856 to 4280 1 to 430       430/448
(95 %)
7 diff
(98.5 %id)
CD106889 brain, Pituitary .c 3875 to 4692 1 to 821       821/840
(97 %)
13 diff
(98.5 %id)
AJ420591   .c 3896 to 5607 10 to 1721   AAA   1712/1721
(99 %)
6 diff
(99.7 %id)
AA287004.
matches multiple genes
germinal center B cell .c 3896 to 4331 1 to 435     also hits gene RPS28 435/435
(100 %)
1 diff
(99.8 %id)
BG928405 cartilage .c 3937 to 4570 84 to 717       634/722
(87 %)
5 diff
(99.4 %id)
CD514367 White Matter .c 3969 to 4901 1 to 938       938/951
(98 %)
17 diff
(98.3 %id)
CA406850 adipose .c 3986 to 4290 1 to 305       305/305
(100 %)
0 diff
(100 %id)
CA771343 Pancreas, Purified pancreatic islet .c 4007 to 4531 2 to 526   fully sequenced,   525/526
(99 %)
6 diff
(98.9 %id)
AA613400 thyroid .c 4015 to 4369 1 to 356       356/356
(100 %)
11 diff
(97.0 %id)
BQ324554 colon_ins .c 4059 to 4476 51 to 468       418/468
(89 %)
11 diff
(97.7 %id)
R71124 placenta .c 4094 to 4545 1 to 452       452/457
(98 %)
5 diff
(99.0 %id)
AA368782 placenta .c 4120 to 4410 1 to 292       292/292
(100 %)
2 diff
(99.4 %id)
AW962624   .c 4120 to 4586 1 to 467       467/544
(85 %)
5 diff
(99.1 %id)
BP396593 pancreatic islet .c 4134 to 4593 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
BG434626 placenta .c 4134 to 4906 1 to 764       764/764
(100 %)
22 diff
(97.2 %id)
BG292515 bladder, transitional cell papilloma, cell line .c 4136 to 4894 1 to 750       750/836
(89 %)
46 diff
(94.5 %id)
BE315464 adenocarcinoma cell line, ovary .c 4144 to 4760 1 to 616       616/670
(91 %)
9 diff
(98.7 %id)
AA203685 liver and spleen .c 4169 to 4746 1 to 574       574/868
(66 %)
10 diff
(98.9 %id)
BU165686 melanotic melanoma, skin .c 4182 to 5044 1 to 874       874/877
(99 %)
22 diff
(97.5 %id)
CD513146 brain, Pituitary .c 4201 to 5035 1 to 847       847/854
(99 %)
14 diff
(98.4 %id)
FN139414 breast carcinoma .c 4205 to 4287 1 to 82       82/82
(100 %)
4 diff
(95.2 %id)
BU929845 placenta .c 4245 to 5016 1 to 782       782/786
(99 %)
13 diff
(98.4 %id)
BG619494 placenta .c 4247 to 4750 1 to 502       502/502
(100 %)
3 diff
(99.5 %id)
BU600027 mixed (pool of 40 RNAs) .c 4263 to 5063 1 to 801       801/801
(100 %)
10 diff
(98.8 %id)
BQ366046 placenta_normal .c 4331 to 4604 1 to 275       275/275
(100 %)
11 diff
(96.0 %id)
BE930561 placenta_normal .c 4335 to 4740 431 to 26       406/437
(92 %)
0 diff
(100 %id)
BG170354 hypernephroma, cell line, Kidney .c 4347 to 5056 1 to 714       714/716
(99 %)
20 diff
(97.3 %id)
AV753410 Pituitary .c 4351 to 4870 1 to 516       516/520
(99 %)
7 diff
(98.7 %id)
BI049247 placenta_normal .c 4384 to 4740 365 to 9       357/365
(97 %)
0 diff
(100 %id)
BG285140 adenocarcinoma, cell line, Prostate .c 4386 to 5177 1 to 773       773/941
(82 %)
37 diff
(96.1 %id)
BM724342 eye, fetal eye .c 4398 to 5033 1 to 637   fully sequenced,   637/637
(100 %)
1 diff
(99.9 %id)
BM820510 stomach .c 4458 to 4618 1 to 160       160/160
(100 %)
1 diff
(99.4 %id)
CR748045 pooled .c 4459 to 4679 1 to 221       221/221
(100 %)
1 diff
(99.6 %id)
BF107520 placenta .c 4461 to 5084 1 to 605       605/669
(90 %)
14 diff
(98.0 %id)
CA771043 Pancreas, Purified pancreatic islet .c 4501 to 5046 546 to 1   fully sequenced,   546/546
(100 %)
0 diff
(100 %id)
BX093088 liver and spleen .c 4504 to 5289 1 to 787       787/787
(100 %)
3 diff
(99.7 %id)
R98142 liver and spleen .c 4506 to 4991 1 to 492       492/499
(98 %)
11 diff
(97.8 %id)
AA490635 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4521 to 4963 1 to 443       443/443
(100 %)
0 diff
(100 %id)
AA436928   .c 4570 to 4774 7 to 213       207/213
(97 %)
6 diff
(97.2 %id)
AA476803   .c 4574 to 5046 1 to 473       473/473
(100 %)
4 diff
(99.2 %id)
AA460873   .c 4574 to 5064 1 to 492       492/492
(100 %)
9 diff
(98.2 %id)
DB295515   .c 4577 to 5046 471 to 1       471/471
(100 %)
2 diff
(99.6 %id)
AW467406 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 4582 to 5051 470 to 1       470/470
(100 %)
0 diff
(100 %id)
BG621371 placenta .c 4610 to 5249 1 to 638       638/762
(83 %)
4 diff
(99.5 %id)
CB163925 Liver .c 4616 to 5198 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BX486142   .c 4622 to 5045 446 to 23   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 424/424
(100 %)
2 diff
(99.6 %id)
AA709085 heart .c 4626 to 5046 433 to 13   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 421/421
(100 %)
0 diff
(100 %id)
H97670 melanocyte .c 4627 to 5046 420 to 1       420/431
(97 %)
0 diff
(100 %id)
AI573115 adenocarcinoma, Pancreas .c 4651 to 5049 403 to 5       399/403
(99 %)
0 diff
(100 %id)
TI_154062743   .c 4673 to 5610 1032 to 102   AAA   931/1011
(92 %)
23 diff
(97.8 %id)
BQ027247 mixed .c 4749 to 5057 327 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 309/309
(100 %)
0 diff
(100 %id)
BG570834 placenta .c 4870 to 5585 1 to 723   AAA   723/805
(89 %)
26 diff
(96.8 %id)
CA421247 Bone, Enchondroma cell line .c 4882 to 5610 745 to 19   AAA   727/727
(100 %)
3 diff
(99.6 %id)
BQ775362 Bone, Human Chondrosarcoma Cell Line .c 4883 to 5611 748 to 19   AAA   730/730
(100 %)
3 diff
(99.6 %id)
AA343131 Spleen .c 4886 to 5221 336 to 1       336/337
(99 %)
0 diff
(100 %id)
AW965039   .c 4887 to 5223 1 to 337       337/476
(70 %)
1 diff
(99.8 %id)
CA443100 lung, Metastatic Chondrosarcoma .c 4915 to 5607 710 to 19   AAA   692/692
(100 %)
3 diff
(99.6 %id)
BG435727 placenta .c 4919 to 5607 1 to 679   AAA   679/679
(100 %)
22 diff
(96.8 %id)
FN058280 breast carcinoma .c 4920 to 5038 1 to 119       119/119
(100 %)
0 diff
(100 %id)
BG619050 placenta .c 4928 to 5514 1 to 585       585/585
(100 %)
3 diff
(99.5 %id)
CA418666 Chondrosarcoma Grade II, Left Pelvis .c 4930 to 5606 695 to 19   AAA   677/677
(100 %)
1 diff
(99.9 %id)
BG619428 placenta .c 4935 to 5546 1 to 628       628/925
(67 %)
26 diff
(97.2 %id)
BQ182152 Knee, Osteoarthritic Cartilage .c 4976 to 5611 655 to 19   AAA   637/637
(100 %)
1 diff
(99.9 %id)
AW188185 pooled .c 4997 to 5606 610 to 1       610/610
(100 %)
0 diff
(100 %id)
BU741620 eye, fetal eye .c 5003 to 5607 622 to 19   fully sequenced, AAA   604/604
(100 %)
0 diff
(100 %id)
DB379213 placenta .c 5010 to 5605 591 to 7       585/601
(97 %)
0 diff
(100 %id)
BE502058 pooled germ cell tumors .c 5013 to 5608 596 to 1       596/596
(100 %)
1 diff
(99.9 %id)
BF448309 carcinoid, lung .c 5024 to 5612 591 to 3       589/591
(99 %)
0 diff
(100 %id)
DN914077   .c 5029 to 5610 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
W24768 heart .c 5034 to 5260 1 to 227       227/227
(100 %)
0 diff
(100 %id)
AA478861.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5037 to 5422 1 to 385     also hits gene ZNF608 385/385
(100 %)
2 diff
(99.5 %id)
AA453732 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5037 to 5588 1 to 550   fully sequenced,   550/550
(100 %)
2 diff
(99.7 %id)
AI298001 carcinoid, lung .c 5054 to 5510 1 to 457     Submitted on the opposite strand 457/458
(99 %)
1 diff
(99.8 %id)
AI566481 adenocarcinoma, Pancreas .c 5055 to 5607 551 to 1       551/551
(100 %)
3 diff
(99.5 %id)
BE715191 head_neck .c 5056 to 5417 377 to 15       363/380
(95 %)
0 diff
(100 %id)
BE715161 head_neck .c 5062 to 5417 370 to 14       357/374
(95 %)
0 diff
(100 %id)
BQ717530 sympathetic trunk .c 5066 to 5609 1 to 543       543/550
(98 %)
1 diff
(99.9 %id)
AA443752   .c 5068 to 5612 544 to 3       542/544
(99 %)
0 diff
(100 %id)
BQ355869 head_neck .c 5075 to 5553 1 to 480       480/480
(100 %)
16 diff
(96.7 %id)
BG992615 head_neck .c 5078 to 5520 455 to 13       443/469
(94 %)
7 diff
(98.6 %id)
DB368532   .c 5078 to 5606 525 to 1       525/538
(97 %)
12 diff
(97.8 %id)
TI_149307853   .c 5088 to 5607 608 to 88   AAA   521/955
(54 %)
2 diff
(99.8 %id)
BU686769 lung, Primary Lung Epithelial Cells .c 5088 to 5607 539 to 19   AAA   521/526
(99 %)
2 diff
(99.7 %id)
AA573123 adrenal adenoma, adrenal gland .c 5089 to 5608 520 to 1       520/520
(100 %)
5 diff
(99.1 %id)
AW473597 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 5093 to 5612 520 to 1       520/520
(100 %)
0 diff
(100 %id)
BG055014 brain, glioblastoma (pooled) .c 5094 to 5611 518 to 1       518/518
(100 %)
0 diff
(100 %id)
DB375406 placenta .c 5098 to 5611 517 to 1       517/517
(100 %)
15 diff
(97.1 %id)
BP397962 pancreatic islet .c 5104 to 5603 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
TI_157614390   .c 5105 to 5611 602 to 95       508/603
(84 %)
0 diff
(100 %id)
AI359140 brain, glioblastoma (pooled) .c 5112 to 5606 507 to 11       497/507
(98 %)
0 diff
(100 %id)
BF438296 Prostate .c 5113 to 5607 513 to 19   AAA   495/495
(100 %)
0 diff
(100 %id)
BQ009570 Chondrosarcoma, Left Pubic Bone .c 5120 to 5607 507 to 19   AAA   489/521
(93 %)
7 diff
(98.7 %id)
AA460699   .c 5123 to 5612 494 to 3       492/494
(99 %)
0 diff
(100 %id)
AA226323   .c 5124 to 5409 1 to 286       286/286
(100 %)
5 diff
(98.3 %id)
AA579869 adrenal adenoma, adrenal gland .c 5125 to 5611 485 to 1       485/485
(100 %)
5 diff
(99.0 %id)
AA630423   .c 5126 to 5611 497 to 12   AAA   486/486
(100 %)
7 diff
(98.6 %id)
BF110438 carcinoid, lung .c 5128 to 5565 487 to 50       438/487
(89 %)
0 diff
(100 %id)
AA216352   .c 5130 to 5409 1 to 279       279/279
(100 %)
3 diff
(99.0 %id)
BE349007 malignant melanoma, metastatic to lymphnode, skin .c 5130 to 5608 479 to 1       479/479
(100 %)
0 diff
(100 %id)
AI623449 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5137 to 5607 492 to 22   AAA   471/471
(100 %)
3 diff
(99.4 %id)
AW075952 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 5138 to 5606 476 to 8       469/476
(98 %)
0 diff
(100 %id)
AI378826 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5140 to 5612 477 to 5       473/477
(99 %)
0 diff
(100 %id)
BQ019034 lung, Metastatic Chondrosarcoma .c 5140 to 5611 490 to 19   AAA   472/480
(98 %)
0 diff
(100 %id)
BQ030318 lung, Metastatic Chondrosarcoma .c 5141 to 5607 485 to 19   AAA   467/467
(100 %)
4 diff
(99.2 %id)
BF108912 pooled .c 5143 to 5612 479 to 9       471/479
(98 %)
0 diff
(100 %id)
BX486468   .c 5149 to 5607 470 to 11   AAA   460/460
(100 %)
4 diff
(99.2 %id)
AI400868 Prostate .c 5152 to 5606 455 to 1       455/455
(100 %)
0 diff
(100 %id)
DB374251 placenta .c 5159 to 5611 453 to 1       453/455
(99 %)
7 diff
(98.5 %id)
N55452 liver and spleen .c 5163 to 5611 448 to 1       448/448
(100 %)
7 diff
(98.5 %id)
BQ026553 placenta .c 5171 to 5607 456 to 19   AAA   438/438
(100 %)
4 diff
(99.1 %id)
AA682814 liver and spleen .c 5172 to 5612 441 to 2       440/441
(99 %)
0 diff
(100 %id)
AA157828 colon, tumor .c 5172 to 5611 464 to 22   AAA   443/445
(99 %)
7 diff
(98.5 %id)
AW194600 Kidney .c 5173 to 5611 452 to 15   AAA   438/438
(100 %)
14 diff
(96.9 %id)
BF589953 Kidney .c 5178 to 5611 445 to 12   AAA   434/434
(100 %)
0 diff
(100 %id)
N30432 melanocyte .c 5179 to 5608 432 to 1       432/432
(100 %)
14 diff
(96.8 %id)
AW772078 Kidney .c 5179 to 5610 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
R71627 placenta .c 5181 to 5594 430 to 13       418/432
(96 %)
0 diff
(100 %id)
AI334239 lung .c 5187 to 5611 437 to 13   AAA   425/425
(100 %)
3 diff
(99.3 %id)
AI990503 pooled germ cell tumors .c 5197 to 5611 438 to 24   AAA   415/415
(100 %)
5 diff
(98.8 %id)
AW341815 carcinoid, lung .c 5197 to 5610 418 to 1       418/418
(100 %)
7 diff
(98.4 %id)
AI131001 heart .c 5201 to 5612 417 to 6       412/417
(98 %)
0 diff
(100 %id)
AI866156 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 5201 to 5612 421 to 3       419/421
(99 %)
0 diff
(100 %id)
BM719250 eye, fetal eye .c 5209 to 5972 1 to 764   tiling clone,   764/764
(100 %)
0 diff
(100 %id)
AA027934 uterus .c 5215 to 5610 398 to 1       398/399
(99 %)
11 diff
(97.3 %id)
AI272827 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5220 to 5607 409 to 22   AAA   388/388
(100 %)
5 diff
(98.8 %id)
AW055159 brain, glioblastoma (pooled) .c 5220 to 5606 388 to 2       387/388
(99 %)
0 diff
(100 %id)
BM194358 leukopheresis .c 5220 to 5612 408 to 16       393/408
(96 %)
0 diff
(100 %id)
T99983 liver and spleen .c 5223 to 5591 1 to 384       384/395
(97 %)
24 diff
(94.0 %id)
AA648598 Ewing's sarcoma .c 5223 to 5606 424 to 42   AAA   383/383
(100 %)
9 diff
(97.7 %id)
AA479959 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5227 to 5607 382 to 1       382/382
(100 %)
3 diff
(99.3 %id)
BQ709438 Spleen .c 5229 to 5611 1 to 384   AAA   384/384
(100 %)
1 diff
(99.8 %id)
AA021541 eye, retina .c 5236 to 5608 382 to 3       380/449
(84 %)
0 diff
(100 %id)
AA226484   .c 5236 to 5611 403 to 24   AAA   380/380
(100 %)
9 diff
(97.7 %id)
BI041405 nervous_tumor .c 5238 to 5506 278 to 11       268/278
(96 %)
0 diff
(100 %id)
H14568 whole brain .c 5239 to 5612 401 to 6       396/402
(98 %)
0 diff
(100 %id)
T73476 Liver .c 5242 to 5612 381 to 3       379/404
(93 %)
0 diff
(100 %id)
R96838 liver and spleen .c 5242 to 5608 394 to 10       385/395
(97 %)
0 diff
(100 %id)
AA662595 Ewing's sarcoma .c 5248 to 5409 1 to 160       160/160
(100 %)
3 diff
(98.2 %id)
H92739 pineal gland .c 5258 to 5574 323 to 1       323/323
(100 %)
11 diff
(96.6 %id)
BG436238 placenta .c 5258 to 5608 1 to 351       351/548
(64 %)
1 diff
(99.9 %id)
AW236296 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 5271 to 5607 337 to 1       337/337
(100 %)
0 diff
(100 %id)
W02758 heart .c 5273 to 5607 364 to 22   AAA   343/392
(87 %)
11 diff
(97.2 %id)
BU953300 mixed (pool of 40 RNAs) .c 5276 to 5611 1 to 336       336/374
(89 %)
2 diff
(99.5 %id)
BF511550   .c 5284 to 5607 341 to 18   AAA   324/324
(100 %)
3 diff
(99.1 %id)
AI274450 Kidney, renal cell tumor .c 5294 to 5607 314 to 1       314/314
(100 %)
0 diff
(100 %id)
BM273069 Islets of Langerhans, Pancreas .c 5294 to 5609 326 to 11   AAA   316/316
(100 %)
1 diff
(99.7 %id)
BM142425 Islets of Langerhans, Pancreas .c 5294 to 5609 326 to 11   AAA   316/316
(100 %)
1 diff
(99.7 %id)
BQ335008 marrow .c 5308 to 5524 1 to 214       214/220
(97 %)
6 diff
(97.3 %id)
BI022562 marrow .c 5315 to 5576 19 to 280       262/280
(93 %)
6 diff
(97.9 %id)
AI655788 pooled germ cell tumors .c 5343 to 5612 276 to 7       270/276
(97 %)
0 diff
(100 %id)
AI081614 liver and spleen .c 5353 to 5612 260 to 1       260/260
(100 %)
2 diff
(99.3 %id)
AA682818 liver and spleen .c 5377 to 5611 234 to 1       234/234
(100 %)
4 diff
(98.3 %id)
AA496012   .c 5378 to 5611 234 to 1       234/234
(100 %)
2 diff
(99.2 %id)
AI769261 pooled .c 5394 to 5608 217 to 2       216/217
(99 %)
0 diff
(100 %id)
AA287085.
matches multiple genes
germinal center B cell .c 5417 to 5607 213 to 23   AAA also hits gene IFNGR2 191/191
(100 %)
0 diff
(100 %id)
AA456648 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5417 to 5608 192 to 1       192/192
(100 %)
0 diff
(100 %id)
AA805450 germinal center B cell .c 5417 to 5607 224 to 34   AAA   191/191
(100 %)
0 diff
(100 %id)
AI291802 placenta .c 5422 to 5612 199 to 9       191/199
(95 %)
0 diff
(100 %id)
AW188795 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 5446 to 5607 162 to 1       162/162
(100 %)
0 diff
(100 %id)
AI582471 adenocarcinoma, Pancreas .c 5461 to 5608 149 to 2       148/149
(99 %)
0 diff
(100 %id)
T60792 ovary .c 5473 to 5612 1 to 140   fully sequenced,   140/140
(100 %)
1 diff
(99.3 %id)
AA447800 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5487 to 5607 121 to 1   fully sequenced,   121/121
(100 %)
0 diff
(100 %id)
T60756 ovary .c 5545 to 5584 41 to 1   fully sequenced,   41/41
(100 %)
0 diff
(100 %id)
TI_151759655   .c 5608 to 6360 1012 to 239   tiling clone,   774/1074
(72 %)
0 diff
(100 %id)
DA423498   .d-u 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DA833356 placenta .d-u 3 to 586 2 to 585   capped   584/588
(99 %)
4 diff
(99.4 %id)
DA851423 placenta .d-u 3 to 594 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
AI765126 colon, colon tumor, RER+ .d-u 498 to 992 1 to 510     Submitted on the opposite strand 510/510
(100 %)
11 diff
(97.9 %id)
BM756429 Ascites, stomach .d-u 499 to 867 1 to 384       384/384
(100 %)
10 diff
(97.4 %id)
BM770731 Ascites, stomach .d-u 499 to 913 1 to 430       430/430
(100 %)
10 diff
(97.7 %id)
BM741182 Ascites, stomach .d-u 499 to 1087 1 to 603       603/603
(100 %)
10 diff
(98.4 %id)
BF439530 pooled .d-u 503 to 605 1 to 103     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
R69088 placenta .d-u 504 to 969 9 to 468     Submitted on the opposite strand 460/468
(98 %)
5 diff
(99.0 %id)
AI240223 pooled .d-u 507 to 865 1 to 374     Submitted on the opposite strand 374/374
(100 %)
9 diff
(97.6 %id)
R67855 placenta .d-u 509 to 878 1 to 375     Submitted on the opposite strand 375/409
(91 %)
18 diff
(95.6 %id)
AI740767 pooled .d-u 510 to 986 1 to 477     Submitted on the opposite strand 477/477
(100 %)
4 diff
(99.2 %id)
AI470212 pooled .d-u 511 to 987 1 to 477     Submitted on the opposite strand 477/477
(100 %)
3 diff
(99.4 %id)
BM755531 Ascites, stomach .d-u 517 to 898 1 to 397       397/397
(100 %)
9 diff
(97.8 %id)
R26131 placenta .d-u 519 to 936 1 to 421     Submitted on the opposite strand 421/422
(99 %)
19 diff
(95.5 %id)
AI168425 pooled .d-u 519 to 982 1 to 464   tiling clone, Submitted on the opposite strand 464/464
(100 %)
0 diff
(100 %id)
AI122952 pooled .d-u 520 to 923 1 to 402     Submitted on the opposite strand 402/402
(100 %)
10 diff
(97.6 %id)
H13281 placenta .d-u 530 to 934 1 to 409     Submitted on the opposite strand 409/411
(99 %)
20 diff
(95.2 %id)
W15511 parathyroid gland, parathyroid tumor .d-u 531 to 951 1 to 429     Submitted on the opposite strand 429/429
(100 %)
17 diff
(96.1 %id)
H92608 pineal gland .d-u 538 to 836 1 to 312     Submitted on the opposite strand 312/313
(99 %)
12 diff
(96.2 %id)
TI_1948079400   .d-u 539 to 1081 129 to 688       560/1126
(49 %)
13 diff
(98.9 %id)
TI_1948080105   .d-u 539 to 1055 130 to 663       534/1162
(45 %)
13 diff
(98.9 %id)
R68610 placenta .d-u 549 to 952 1 to 409     Submitted on the opposite strand 409/412
(99 %)
18 diff
(95.7 %id)
AI760064 pooled .d-u 574 to 939 1 to 367     Submitted on the opposite strand 367/367
(100 %)
2 diff
(99.5 %id)
AW951915   .d-u 708 to 1073 1 to 366   tiling clone,   366/366
(100 %)
3 diff
(99.2 %id)
BF108898 pooled .d-u 788 to 887 1 to 100     Submitted on the opposite strand 100/100
(100 %)
5 diff
(95.0 %id)
BI031973 marrow .d-u 917 to 1403 9 to 494   tiling clone,   486/494
(98 %)
6 diff
(98.8 %id)
CN270945 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d-u 987 to 1154 1 to 168   tiling clone,   168/168
(100 %)
5 diff
(97.1 %id)
BI032007 marrow .d-u 1134 to 1586 464 to 9   tiling clone,   456/464
(98 %)
18 diff
(96.2 %id)
DA565571 heart .d-u 1226 to 1783 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA830863 placenta .d-u 1371 to 2223 2 to 859   tiling clone, capped   858/859
(99 %)
29 diff
(96.7 %id)
DA568901 whole embryo, mainly head .d-u 1798 to 2566 2 to 770   fully sequenced, capped   769/769
(100 %)
3 diff
(99.7 %id)
CA487994   .d-u 1825 to 2694 1 to 882   tiling clone,   882/899
(98 %)
27 diff
(97.0 %id)
DB318856 heart .d-u 2512 to 3038 527 to 1   tiling clone,   527/527
(100 %)
0 diff
(100 %id)
DB376226 placenta .d-u 2518 to 3038 525 to 1       525/527
(99 %)
27 diff
(94.9 %id)
DB355473 whole embryo, mainly head .d-u 2536 to 3038 502 to 1   fully sequenced,   502/502
(100 %)
2 diff
(99.7 %id)
DB380038 placenta .d-u 2584 to 3038 456 to 2       455/587
(77 %)
0 diff
(100 %id)
TI_149307554   .e 1 to 543 631 to 88 exact AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 544/976
(55 %)
2 diff
(99.8 %id)
BM979314 lung, Primary Lung Epithelial Cells .e 1 to 543 562 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 544/548
(99 %)
2 diff
(99.7 %id)
AF350451   Gene FAM46A, variant not shown         This clone was ignored    
BX648876 human salivary gland Gene FAM46A, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
CD050976 embryonic trophoblasts, made from WA01 stemcells Gene FAM46A, variant not shown         This clone was ignored    
FJ211061   Gene FAM46A, variant not shown         This clone was ignored    
R74181 placenta Gene FAM46A, variant not shown         Suspected internal deletion, this clone was ignored    
R74266 placenta Gene FAM46A, variant not shown         Suspected internal deletion, this clone was ignored    
H87001 placenta Gene FAM46A, variant not shown         Submitted on the opposite strand    
H95449 placenta Gene FAM46A, variant not shown         Submitted on the opposite strand    
H96358 placenta Gene FAM46A, variant not shown         Submitted on the opposite strand    
AI149274 placenta Gene FAM46A, variant not shown         Submitted on the opposite strand    
BF507644   Gene FAM46A, variant not shown         Submitted on the opposite strand    
BF057607 fibrotheoma, ovary Gene FAM46A, variant not shown         Submitted on the opposite strand    
BF448597 fibrotheoma, ovary Gene FAM46A, variant not shown         Submitted on the opposite strand    
BF979354 testis Gene FAM46A, variant not shown         This clone was ignored    
BF979903 testis Gene FAM46A, variant not shown         This clone was ignored    
BG331022 large cell carcinoma, lung Gene FAM46A, variant not shown         This clone was ignored    
BG488721 large cell carcinoma, lung Gene FAM46A, variant not shown         This clone was ignored    
CA336100 anterior rhombomeres 1-4 (4 pooled) Gene FAM46A, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB377776 placenta Gene FAM46A, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
DA831885 placenta Gene FAM46A, variant not shown       fully sequenced, capped Suspected internal deletion, this clone was ignored    
DA951570 Spleen Gene FAM46A, variant not shown       capped This clone was ignored    
DB060241 testis Gene FAM46A, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI