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Gene BPTFTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
515 supporting clones for gene BPTF back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_004459.6   BPTF.a 1 to 10863 1 to 10863 exact RefSeq,   10863/10863
(100 %)
0 diff
(100 %id)
U05237 brain BPTF.a 457 to 3059 51 to 2652   tiling clone,   2602/2673
(97 %)
18 diff
(99.4 %id)
AY282495   BPTF.a 479 to 8773 1 to 8295   tiling clone,   8295/8295
(100 %)
4 diff
(100.0 %id)
CD703460 normal nasopharynx BPTF.a 1498 to 2027 19 to 548       530/548
(96 %)
9 diff
(98.4 %id)
DA491828 brain BPTF.a 1552 to 2114 2 to 564   capped   563/574
(98 %)
1 diff
(99.9 %id)
T29631 lung BPTF.a 1819 to 2078 1 to 260       260/260
(100 %)
0 diff
(100 %id)
BF935995 nervous_tumor BPTF.a 1831 to 2170 338 to 1     Submitted on the opposite strand 338/369
(91 %)
9 diff
(97.6 %id)
AW951466   BPTF.a 1841 to 2408 1 to 568       568/569
(99 %)
2 diff
(99.7 %id)
BU169920 embryonal carcinoma, cell line, testis BPTF.a 2190 to 3050 1 to 863       863/867
(99 %)
10 diff
(98.9 %id)
AL711135 human skeletal muscle BPTF.a 2258 to 2841 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DA767850 brain BPTF.a 4737 to 5488 12 to 767   capped   756/767
(98 %)
9 diff
(98.9 %id)
AK022570   BPTF.a 5901 to 7957 1 to 2057   available from FLJ,   2057/2057
(100 %)
2 diff
(100.0 %id)
CD654525 Embryonic Stem cells BPTF.a 7044 to 7771 738 to 18   AAA Submitted on the opposite strand 721/826
(87 %)
6 diff
(99.3 %id)
TI_154027286   BPTF.a 7082 to 7903 941 to 121       821/922
(89 %)
16 diff
(98.3 %id)
BE389363 endometrium, adenocarcinoma cell line, uterus BPTF.a 7121 to 7710 1 to 591       591/739
(79 %)
4 diff
(99.5 %id)
BQ716886 dorsal root ganglia BPTF.a 7146 to 7942 1 to 798       798/929
(85 %)
7 diff
(99.3 %id)
BE781583 eye, retinoblastoma BPTF.a 7323 to 7928 1 to 627       563/1222
(46 %)
21 diff
(98.3 %id)
DA730751   BPTF.a 7358 to 8132 2 to 779   capped   778/787
(98 %)
11 diff
(98.7 %id)
BM772020 stomach BPTF.a 7398 to 7710 1 to 313       313/325
(96 %)
22 diff
(93.3 %id)
DB325528 brain BPTF.a 7419 to 7942 540 to 10       538/540
(99 %)
12 diff
(97.8 %id)
CX760421 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass BPTF.a 7438 to 8155 1 to 725     Submitted on the opposite strand 725/726
(99 %)
12 diff
(98.4 %id)
BG002357 placenta_normal BPTF.a 7518 to 8062 554 to 11       544/554
(98 %)
9 diff
(98.4 %id)
AI094217 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.a 7541 to 7957 417 to 1       417/417
(100 %)
0 diff
(100 %id)
DR760191 embryonic stem BPTF.a 7568 to 8433 6 to 870       865/870
(99 %)
6 diff
(99.4 %id)
DA662209   BPTF.a 7591 to 8158 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB362703   BPTF.a 9089 to 9637 546 to 1   tiling clone,   546/552
(98 %)
12 diff
(97.9 %id)
BC037422 Lymph, lymphoma BPTF.b 1 to 1550 11 to 1560   tiling clone, available from MGC, AAA   1550/1550
(100 %)
0 diff
(100 %id)
BM458442 lymph, lymphoma, cell line BPTF.b 3 to 490 1 to 490   available from MGC,   490/1309
(37 %)
13 diff
(99.1 %id)
AB032251   BPTF.b 142 to 9829 1 to 9682 P9T P30T P31S T32G S33P ... tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 9682/9682
(100 %)
54 diff
(99.5 %id)
NM_182641.3   BPTF.b 142 to 11055 1 to 10914 exact RefSeq,   10914/10914
(100 %)
0 diff
(100 %id)
DC299018   BPTF.b 568 to 1135 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
AA248058   BPTF.b 695 to 918 1 to 217       217/217
(100 %)
13 diff
(94.1 %id)
CN299293 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 BPTF.b 746 to 1155 1 to 410       410/410
(100 %)
0 diff
(100 %id)
BM825936 Ascites, stomach BPTF.b 755 to 1182 1 to 428       428/428
(100 %)
1 diff
(99.8 %id)
DW446520 Liver BPTF.b 772 to 970 19 to 217       199/217
(91 %)
14 diff
(93.6 %id)
DA500167 brain BPTF.b 859 to 1430 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BE931074 placenta_normal BPTF.b 868 to 1351 7 to 492       486/497
(97 %)
8 diff
(98.4 %id)
BX641453   BPTF.b 868 to 1403 1 to 536       536/536
(100 %)
1 diff
(99.9 %id)
DW463750 Liver BPTF.b 913 to 1007 17 to 111       95/111
(85 %)
6 diff
(94.6 %id)
DA336804 hippocampus BPTF.b 920 to 1507 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
BP219468 caudate nucleus BPTF.b 929 to 1510 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM451623 eye, retinoblastoma BPTF.b 1009 to 1896 13 to 914       898/1050
(85 %)
22 diff
(98.0 %id)
FN164739 breast carcinoma BPTF.b 1063 to 1159 96 to 1     Submitted on the opposite strand 96/96
(100 %)
1 diff
(99.0 %id)
BF925278 nervous_tumor BPTF.b 1082 to 1604 12 to 533       522/533
(97 %)
6 diff
(98.9 %id)
BU181758 eye, retinoblastoma BPTF.b 1144 to 1654 1 to 511       511/511
(100 %)
0 diff
(100 %id)
BQ216728 melanotic melanoma, skin BPTF.b 1181 to 1847 45 to 722       678/938
(72 %)
19 diff
(98.0 %id)
BP238815 Liver BPTF.b 1199 to 1795 1 to 597       597/597
(100 %)
5 diff
(99.2 %id)
BP239064 Liver BPTF.b 1199 to 1796 1 to 598       598/598
(100 %)
3 diff
(99.5 %id)
BP239497 Liver BPTF.b 1199 to 1785 1 to 587       587/587
(100 %)
7 diff
(98.9 %id)
FN138162 breast carcinoma BPTF.b 1221 to 1328 1 to 106       106/106
(100 %)
2 diff
(98.2 %id)
BF925861 nervous_tumor BPTF.b 1227 to 1746 536 to 18     Submitted on the opposite strand 519/536
(96 %)
0 diff
(100 %id)
DA931785 Spleen BPTF.b 1233 to 1780 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BF923168 nervous_tumor BPTF.b 1327 to 1739 418 to 7     Submitted on the opposite strand 412/418
(98 %)
1 diff
(99.8 %id)
DW431124 Liver BPTF.b 1331 to 1550 17 to 236   AAA   220/236
(93 %)
6 diff
(97.5 %id)
BF923162 nervous_tumor BPTF.b 1346 to 1738 409 to 19     Submitted on the opposite strand 391/409
(95 %)
0 diff
(100 %id)
FN116104 breast carcinoma BPTF.b 1375 to 1476 102 to 1     Submitted on the opposite strand 102/102
(100 %)
0 diff
(100 %id)
AU186082 skin BPTF.b 1376 to 1634 1 to 259       259/259
(100 %)
0 diff
(100 %id)
BP289269 lung BPTF.b 1447 to 2027 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
DA133683 alzheimer cortex BPTF.b 1466 to 2023 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BG434500 placenta BPTF.b 1466 to 2066 1 to 592       592/597
(99 %)
11 diff
(98.2 %id)
BQ330805 lung_tumor BPTF.b 1574 to 1990 1 to 416       416/416
(100 %)
10 diff
(97.6 %id)
DW438907 Liver BPTF.b 1639 to 1862 20 to 243       224/244
(91 %)
3 diff
(98.8 %id)
DW448253 Liver BPTF.b 1639 to 1828 20 to 209       190/209
(90 %)
6 diff
(97.2 %id)
AA481504 germinal center B cell BPTF.b 1855 to 2065 59 to 275     Submitted on the opposite strand 217/275
(78 %)
6 diff
(97.9 %id)
BP243910 Liver BPTF.b 1933 to 2499 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
AW852071 colon BPTF.b 2023 to 2618 1 to 596       596/597
(99 %)
5 diff
(99.2 %id)
BE933509 head_neck BPTF.b 2063 to 2296 1 to 236       236/236
(100 %)
11 diff
(95.4 %id)
DW407760 Liver BPTF.b 2066 to 2517 22 to 473       452/473
(95 %)
7 diff
(98.6 %id)
FN146825 breast carcinoma BPTF.b 2089 to 2187 1 to 98       98/98
(100 %)
1 diff
(99.0 %id)
FN055862 breast carcinoma BPTF.b 2116 to 2189 1 to 75       75/75
(100 %)
1 diff
(98.7 %id)
FN138721 breast carcinoma BPTF.b 2152 to 2236 1 to 85       85/85
(100 %)
0 diff
(100 %id)
BP220938 colon BPTF.b 2173 to 2743 1 to 571       571/571
(100 %)
6 diff
(99.0 %id)
AA279887 germinal center B cell BPTF.b 2212 to 2506 1 to 295       295/295
(100 %)
1 diff
(99.7 %id)
AW852124 colon BPTF.b 2258 to 2748 489 to 1       489/489
(100 %)
2 diff
(99.6 %id)
CN299288 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 2281 to 2629 1 to 349       349/349
(100 %)
1 diff
(99.8 %id)
AI583544 adenocarcinoma, Pancreas BPTF.b 2282 to 2793 512 to 1       512/512
(100 %)
1 diff
(99.9 %id)
AW129468 serous papillary carcinoma, high grade, 2pooled tumors, uterus BPTF.b 2282 to 2799 518 to 1       518/518
(100 %)
1 diff
(99.9 %id)
AA704421 liver and spleen BPTF.b 2294 to 2769 475 to 1       475/475
(100 %)
3 diff
(99.4 %id)
FN125980 breast carcinoma BPTF.b 2299 to 2365 68 to 1     Submitted on the opposite strand 68/76
(89 %)
1 diff
(98.7 %id)
BM931548 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.b 2325 to 2747 1 to 423       423/485
(87 %)
1 diff
(99.8 %id)
BP380221 uterus BPTF.b 2330 to 2877 1 to 541       541/583
(92 %)
8 diff
(98.7 %id)
AA481189 germinal center B cell BPTF.b 2360 to 2820 523 to 63   AAA Submitted on the opposite strand 461/496
(92 %)
6 diff
(98.8 %id)
BF445657 sympathetic trunk BPTF.b 2408 to 2792 385 to 1       385/385
(100 %)
4 diff
(99.0 %id)
BF942269 medullary carcinoma, thyroid BPTF.b 2443 to 2798 15 to 370     Submitted on the opposite strand 356/370
(96 %)
9 diff
(97.6 %id)
BE081960 breast BPTF.b 2452 to 2811 361 to 1     Submitted on the opposite strand 361/361
(100 %)
2 diff
(99.5 %id)
BQ307753 breast BPTF.b 2479 to 2895 416 to 3       414/416
(99 %)
4 diff
(99.1 %id)
BU540353 mixed (pool of 40 RNAs) BPTF.b 2512 to 3049 1 to 538   tiling clone,   538/546
(98 %)
2 diff
(99.7 %id)
BM992191 Bone, Subchondral Bone BPTF.b 2751 to 3355 623 to 19   AAA   605/655
(92 %)
3 diff
(99.6 %id)
BF176138 blood BPTF.b 2767 to 3234 1 to 466       466/467
(99 %)
6 diff
(98.8 %id)
DA395473 thalamus BPTF.b 2801 to 3390 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
AA480961 germinal center B cell BPTF.b 2872 to 3304 1 to 433       433/433
(100 %)
0 diff
(100 %id)
BM802054 eye, retinoblastoma BPTF.b 2896 to 3888 12 to 1005       994/1131
(87 %)
50 diff
(95.6 %id)
GD143142   BPTF.b 2945 to 3075 1 to 131   AAA   131/131
(100 %)
1 diff
(99.3 %id)
DB222339 trachea BPTF.b 3010 to 3310 2 to 301   capped   300/300
(100 %)
1 diff
(99.7 %id)
DN915945   BPTF.b 3038 to 3525 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
BI457269 epithelioid carcinoma cell line, Pancreas BPTF.b 3095 to 3924 1 to 828       828/830
(99 %)
27 diff
(96.8 %id)
TI_45133275   BPTF.b 3096 to 3924 58 to 884       827/829
(99 %)
26 diff
(96.9 %id)
AF114103 lung BPTF.b 3141 to 3596 1 to 457       457/457
(100 %)
4 diff
(99.2 %id)
AF114105 lung BPTF.b 3141 to 3596 1 to 459       459/459
(100 %)
4 diff
(99.2 %id)
BG574526 breast, mammary adenocarcinoma, cell line BPTF.b 3148 to 3907 1 to 773       773/915
(84 %)
24 diff
(97.4 %id)
BM714540 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.b 3267 to 3694 1 to 428   fully sequenced,   428/428
(100 %)
0 diff
(100 %id)
GD154554   BPTF.b 3281 to 3360 1 to 80       80/83
(96 %)
3 diff
(96.4 %id)
GD160119   BPTF.b 3281 to 3360 1 to 80       80/83
(96 %)
3 diff
(96.4 %id)
AA486042   BPTF.b 3286 to 3800 1 to 515       515/515
(100 %)
0 diff
(100 %id)
CN299290 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 BPTF.b 3356 to 3644 1 to 289       289/289
(100 %)
1 diff
(99.7 %id)
EL593394 epidermis, skin BPTF.b 3562 to 4324 16 to 775       760/870
(87 %)
30 diff
(96.6 %id)
EL593440 epidermis, skin BPTF.b 3562 to 4252 16 to 710       695/710
(97 %)
6 diff
(99.2 %id)
CD691765 normal nasopharynx BPTF.b 3564 to 4194 21 to 651       631/651
(96 %)
6 diff
(99.1 %id)
DB218403 trachea BPTF.b 3565 to 4114 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DN915341   BPTF.b 3662 to 4294 1 to 630       630/630
(100 %)
6 diff
(99.1 %id)
BM675313 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.b 3664 to 4360 706 to 17   fully sequenced, AAA   690/690
(100 %)
4 diff
(99.5 %id)
DA317568 hippocampus BPTF.b 3738 to 4287 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA195959 amygdala BPTF.b 3812 to 4383 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
AI290321 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.b 3827 to 4293 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AA488659   BPTF.b 3836 to 4360 525 to 1       525/525
(100 %)
0 diff
(100 %id)
BG461835   BPTF.b 3878 to 4338 464 to 1     Submitted on the opposite strand 464/543
(85 %)
10 diff
(98.2 %id)
DA644583   BPTF.b 3959 to 4508 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BM312315 Pancreas, Purified pancreatic islet BPTF.b 4034 to 4681 1 to 648       648/648
(100 %)
7 diff
(99.0 %id)
AI242380 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.b 4090 to 4362 273 to 1       273/273
(100 %)
0 diff
(100 %id)
DN915946   BPTF.b 4169 to 4715 550 to 4       547/550
(99 %)
0 diff
(100 %id)
BU183985 eye, retinoblastoma BPTF.b 4173 to 5118 1 to 948       948/951
(99 %)
12 diff
(98.8 %id)
DN915340   BPTF.b 4186 to 4715 534 to 4       531/534
(99 %)
0 diff
(100 %id)
M85386   BPTF.b 4268 to 4532 1 to 265       265/265
(100 %)
0 diff
(100 %id)
BX506580 Liver BPTF.b 4275 to 4959 1 to 683       683/683
(100 %)
2 diff
(99.8 %id)
DA996389   BPTF.b 4317 to 4849 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
AI033427 liver and spleen BPTF.b 4335 to 4557 239 to 17       223/239
(93 %)
0 diff
(100 %id)
AW850923 colon BPTF.b 4376 to 4902 26 to 551       526/551
(95 %)
6 diff
(99.0 %id)
BG952784 colon BPTF.b 4389 to 4760 1 to 372       372/372
(100 %)
9 diff
(97.6 %id)
BQ318960 colon BPTF.b 4389 to 4760 1 to 372       372/372
(100 %)
9 diff
(97.6 %id)
CN299286 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.b 4402 to 5122 1 to 722       722/722
(100 %)
3 diff
(99.6 %id)
AA480900 germinal center B cell BPTF.b 4438 to 4929 505 to 14       492/505
(97 %)
0 diff
(100 %id)
CN299292 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 4454 to 5037 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BQ061478 lymph, lymphoma, cell line BPTF.b 4490 to 5503 1 to 1042       1042/1046
(99 %)
36 diff
(96.6 %id)
DA800964 brain BPTF.b 4508 to 5056 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
AW502989 lymph BPTF.b 4528 to 4963 1 to 436       436/436
(100 %)
5 diff
(98.9 %id)
DB076421 testis BPTF.b 4531 to 5109 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
TI_154158697   BPTF.b 4535 to 5067 97 to 630       534/535
(99 %)
14 diff
(97.4 %id)
BF088801 head_neck BPTF.b 4597 to 5015 1 to 419       419/419
(100 %)
1 diff
(99.8 %id)
DA094659 cerebellum BPTF.b 4660 to 5208 2 to 550   capped   549/551
(99 %)
2 diff
(99.7 %id)
BE698287 uterus_tumor BPTF.b 4662 to 5050 386 to 1       386/386
(100 %)
4 diff
(99.0 %id)
AW851237 colon BPTF.b 4701 to 5125 10 to 434       425/434
(97 %)
6 diff
(98.7 %id)
AW851374 colon BPTF.b 4701 to 5125 10 to 434       425/434
(97 %)
6 diff
(98.7 %id)
DA795746 brain BPTF.b 4717 to 5192 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
CN299291 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 4728 to 5392 1 to 667       667/667
(100 %)
2 diff
(99.8 %id)
DA773682 brain BPTF.b 4791 to 5359 2 to 570   capped   569/570
(99 %)
4 diff
(99.3 %id)
DA448234 tongue, tumor tissue BPTF.b 4919 to 5468 2 to 551   capped   550/551
(99 %)
3 diff
(99.5 %id)
CF121808 lymph BPTF.b 4966 to 5593 1 to 627       627/627
(100 %)
5 diff
(99.3 %id)
TI_154181104   BPTF.b 4972 to 5764 75 to 864       790/819
(96 %)
21 diff
(97.5 %id)
DA799487 brain BPTF.b 5009 to 5552 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BU176205 eye, retinoblastoma BPTF.b 5010 to 5884 1 to 882       882/883
(99 %)
11 diff
(98.8 %id)
DA123218 cerebellum BPTF.b 5057 to 5617 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
CN299289 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.b 5124 to 5764 1 to 642       642/642
(100 %)
1 diff
(99.9 %id)
DN990314 brain, whole brain BPTF.b 5212 to 5857 1 to 646       646/646
(100 %)
3 diff
(99.6 %id)
DA811168 brain BPTF.b 5270 to 5843 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BE694797 breast BPTF.b 5295 to 5618 10 to 331       322/346
(93 %)
12 diff
(96.6 %id)
DA489426 brain BPTF.b 5319 to 5853 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
BX471545   BPTF.b 5328 to 5843 8 to 523       516/523
(98 %)
6 diff
(98.9 %id)
DA202369 brain BPTF.b 5335 to 5905 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA770796 brain BPTF.b 5339 to 5910 2 to 573   capped   572/581
(98 %)
1 diff
(99.9 %id)
BF511131   BPTF.b 5352 to 5808 458 to 2       457/465
(98 %)
1 diff
(99.8 %id)
DA410399 thalamus BPTF.b 5365 to 5917 2 to 554   capped   553/560
(98 %)
5 diff
(99.2 %id)
DA410467 thalamus BPTF.b 5365 to 5918 2 to 555   capped   554/560
(98 %)
7 diff
(98.8 %id)
AI825492 pooled germ cell tumors BPTF.b 5391 to 5755 367 to 1       367/367
(100 %)
3 diff
(99.2 %id)
DA877980 Prostate BPTF.b 5429 to 6007 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
AW499531 lymph BPTF.b 5477 to 5746 8 to 277       270/277
(97 %)
18 diff
(93.6 %id)
AW502114 lymph BPTF.b 5477 to 5652 8 to 183       176/183
(96 %)
12 diff
(93.5 %id)
AW502349 lymph BPTF.b 5477 to 5910 8 to 441       434/449
(96 %)
6 diff
(98.7 %id)
CF143401 lymph BPTF.b 5477 to 6035 8 to 566       559/566
(98 %)
6 diff
(99.0 %id)
CF143445 lymph BPTF.b 5477 to 6038 8 to 569       562/569
(98 %)
6 diff
(99.0 %id)
CF135453 lymph BPTF.b 5477 to 6064 8 to 595       588/595
(98 %)
6 diff
(99.0 %id)
CF135401 lymph BPTF.b 5477 to 5993 8 to 524       517/524
(98 %)
6 diff
(98.9 %id)
TI_154157628   BPTF.b 5477 to 6060 83 to 665       583/583
(100 %)
8 diff
(98.7 %id)
TI_154163727   BPTF.b 5477 to 6205 72 to 797       726/1187
(61 %)
9 diff
(99.3 %id)
TI_154163766   BPTF.b 5477 to 6341 70 to 930       861/1129
(76 %)
37 diff
(96.8 %id)
TI_154174792   BPTF.b 5477 to 6101 88 to 712       625/625
(100 %)
6 diff
(99.1 %id)
TI_154174870   BPTF.b 5477 to 6096 88 to 708       621/621
(100 %)
2 diff
(99.7 %id)
AI825312 pooled germ cell tumors BPTF.b 5504 to 5755 252 to 1       252/252
(100 %)
0 diff
(100 %id)
BM011428 brain, neuroblastoma, cell line BPTF.b 5518 to 6060 9 to 557       549/557
(98 %)
17 diff
(97.0 %id)
TI_59380593   BPTF.b 5518 to 6060 73 to 621       549/556
(98 %)
17 diff
(97.0 %id)
DA121047 cerebellum BPTF.b 5526 to 6058 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
AU124130   BPTF.b 5665 to 6470 2 to 807   capped   806/840
(95 %)
10 diff
(98.9 %id)
CN299285 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 5672 to 6425 1 to 754       754/754
(100 %)
0 diff
(100 %id)
BE719654 head_neck BPTF.b 5707 to 5953 1 to 248       248/280
(88 %)
4 diff
(98.6 %id)
BQ311334 breast_normal BPTF.b 5716 to 6035 326 to 8       319/347
(91 %)
1 diff
(99.8 %id)
BU431656 lymph BPTF.b 5717 to 6051 8 to 342       335/342
(97 %)
12 diff
(96.5 %id)
TI_154153640   BPTF.b 5717 to 6201 80 to 564       485/619
(78 %)
16 diff
(97.5 %id)
DB076270 testis BPTF.b 5758 to 6305 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BG164582 hypernephroma, cell line, Kidney BPTF.b 5791 to 6596 1 to 810       807/905
(89 %)
10 diff
(98.9 %id)
BQ716216 sympathetic trunk BPTF.b 5792 to 6675 1 to 888   tiling clone,   888/917
(96 %)
8 diff
(99.2 %id)
BE252815 eye, retinoblastoma BPTF.b 5888 to 6483 1 to 593       595/594
(100 %)
6 diff
(99.0 %id)
DA579910   BPTF.b 5992 to 6509 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
AA084307 pineal gland BPTF.b 6038 to 6192 162 to 8     Submitted on the opposite strand 155/162
(95 %)
0 diff
(100 %id)
CK005394 brain/CNS, Human Brain - Frontal Cortex BPTF.b 6060 to 6765 1 to 705       705/705
(100 %)
8 diff
(98.9 %id)
BQ309175 breast BPTF.b 6061 to 6631 570 to 3       568/570
(99 %)
10 diff
(98.3 %id)
BU507358 leiomyosarcoma, uterus BPTF.b 6112 to 6939 1 to 830       830/842
(98 %)
3 diff
(99.7 %id)
AA313880 colon BPTF.b 6122 to 6604 1 to 483       483/483
(100 %)
3 diff
(99.4 %id)
AW961200   BPTF.b 6130 to 6811 1 to 682       682/682
(100 %)
11 diff
(98.4 %id)
DA576754   BPTF.b 6147 to 6709 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AA177096   BPTF.b 6167 to 6531 1 to 360       360/401
(89 %)
18 diff
(95.6 %id)
AW747967 breast BPTF.b 6207 to 6346 140 to 1       140/140
(100 %)
1 diff
(99.3 %id)
DA444182 tongue, tumor tissue BPTF.b 6213 to 6790 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BM835394 stomach BPTF.b 6307 to 6678 1 to 372       372/372
(100 %)
0 diff
(100 %id)
BQ220414 embryonal carcinoma, cell line, testis BPTF.b 6325 to 6864 1 to 546       546/1098
(49 %)
39 diff
(96.5 %id)
BM786451 Ascites, stomach BPTF.b 6351 to 6956 1 to 606       606/606
(100 %)
0 diff
(100 %id)
BU187389 eye, retinoblastoma BPTF.b 6361 to 7256 1 to 897       897/897
(100 %)
11 diff
(98.8 %id)
DN995436 breast cancer, Mammary gland (cancer tissue) BPTF.b 6414 to 6887 2 to 475       474/475
(99 %)
6 diff
(98.8 %id)
DA747623   BPTF.b 6421 to 6985 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB100818 thymus BPTF.b 6439 to 7239 2 to 810   capped   809/861
(93 %)
17 diff
(98.1 %id)
BQ717925 sympathetic trunk BPTF.b 6529 to 7385 1 to 864   tiling clone,   864/864
(100 %)
11 diff
(98.8 %id)
BE843268 testis_normal BPTF.b 6586 to 6785 202 to 2       201/242
(83 %)
11 diff
(95.5 %id)
CN353672 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.b 6595 to 7273 13 to 691       679/691
(98 %)
6 diff
(99.2 %id)
DA396930 thalamus BPTF.b 6662 to 7254 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA391955 thalamus BPTF.b 6717 to 7318 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
CN353669 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 BPTF.b 6719 to 7269 9 to 559       551/559
(98 %)
6 diff
(99.0 %id)
BG403879 bladder, transitional cell papilloma, cell line BPTF.b 6721 to 7392 1 to 670       670/671
(99 %)
21 diff
(96.9 %id)
CN353668 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 6775 to 7351 1 to 577       577/579
(99 %)
1 diff
(99.9 %id)
CX759345 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass BPTF.b 6780 to 7392 1 to 611     Submitted on the opposite strand 611/828
(73 %)
15 diff
(98.2 %id)
CV809604 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass BPTF.b 6954 to 7723 1 to 773       773/774
(99 %)
18 diff
(97.7 %id)
CR993147 T-Lymphocytes BPTF.b 7018 to 7821 1 to 807       807/826
(97 %)
10 diff
(98.8 %id)
AA366224 Pancreas BPTF.b 7063 to 7327 1 to 266       266/267
(99 %)
4 diff
(98.6 %id)
AA357157   BPTF.b 7085 to 7348 1 to 264     Submitted on the opposite strand 264/264
(100 %)
1 diff
(99.7 %id)
H86935 eye, retina BPTF.b 7099 to 7467 1 to 377       377/419
(89 %)
17 diff
(96.0 %id)
BI024524 marrow BPTF.b 7106 to 7469 9 to 372       364/378
(96 %)
1 diff
(99.8 %id)
BI024528 marrow BPTF.b 7106 to 7469 18 to 383       366/389
(94 %)
5 diff
(98.8 %id)
EC583853 Prostate BPTF.b 7122 to 7208 88 to 1       88/95
(92 %)
4 diff
(95.8 %id)
BQ338848 nervous_normal BPTF.b 7144 to 7392 269 to 22       248/280
(88 %)
0 diff
(100 %id)
BE090270 breast BPTF.b 7150 to 7589 4 to 440       437/447
(97 %)
7 diff
(98.5 %id)
AW752365 colon BPTF.b 7151 to 7666 11 to 532       522/532
(98 %)
6 diff
(98.9 %id)
DB015442 esophageal, tumor tissue BPTF.b 7162 to 7724 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
AW753846 colon BPTF.b 7194 to 7815 645 to 27       619/645
(95 %)
0 diff
(100 %id)
BM798163 Ascites, stomach BPTF.b 7207 to 7729 1 to 523       523/523
(100 %)
3 diff
(99.5 %id)
AW375959 colon BPTF.b 7246 to 7666 101 to 529       429/529
(81 %)
6 diff
(98.9 %id)
EC486266 Prostate BPTF.b 7251 to 7347 1 to 97       97/97
(100 %)
0 diff
(100 %id)
AW362772 colon BPTF.b 7255 to 7753 499 to 1       499/499
(100 %)
2 diff
(99.6 %id)
BE464864 carcinoid, lung BPTF.b 7311 to 7853 543 to 1       543/543
(100 %)
0 diff
(100 %id)
DA492413 brain BPTF.b 7321 to 7873 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA079854 cerebellum BPTF.b 7474 to 8048 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AA704907 liver and spleen BPTF.b 7505 to 7951 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
AA704948 liver and spleen BPTF.b 7559 to 7951 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AA704938 liver and spleen BPTF.b 7563 to 7951 389 to 1       389/389
(100 %)
5 diff
(98.8 %id)
FN108334 breast carcinoma BPTF.b 7624 to 7703 80 to 1     Submitted on the opposite strand 80/82
(97 %)
0 diff
(100 %id)
DA365959 subthalamic nucleus BPTF.b 7636 to 8127 2 to 493   capped   492/492
(100 %)
1 diff
(99.8 %id)
CN299287 embryonic stem cells, cell lines H1, H7, andH9 BPTF.b 7802 to 8486 2 to 694       693/694
(99 %)
17 diff
(97.6 %id)
BX506413 Liver BPTF.b 7848 to 8388 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
EH328951   BPTF.b 7870 to 7931 1 to 62       62/62
(100 %)
0 diff
(100 %id)
CN353666 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.b 7876 to 8475 1 to 600       600/600
(100 %)
4 diff
(99.4 %id)
BI002292 head_normal BPTF.b 7879 to 8224 343 to 1       343/352
(97 %)
6 diff
(98.3 %id)
BF801412 colon_ins BPTF.b 7881 to 8247 1 to 368       368/398
(92 %)
19 diff
(95.3 %id)
BF876389 lung_tumor BPTF.b 7888 to 8216 1 to 330       330/336
(98 %)
6 diff
(98.3 %id)
BQ346381 nervous_tumor BPTF.b 7937 to 8221 18 to 303       286/303
(94 %)
7 diff
(97.7 %id)
EL593425 epidermis, skin BPTF.b 7958 to 8461 1 to 504       504/529
(95 %)
6 diff
(98.9 %id)
BQ718666 sympathetic trunk BPTF.b 7961 to 8824 1 to 867   tiling clone,   867/870
(99 %)
16 diff
(98.2 %id)
BU740888 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.b 7980 to 8384 410 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 405/419
(96 %)
0 diff
(100 %id)
BM692013 eye, human retina BPTF.b 8021 to 8384 1 to 364   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 364/376
(96 %)
6 diff
(98.5 %id)
AA740997 germinal center B cell BPTF.b 8043 to 8351 309 to 1       309/309
(100 %)
4 diff
(98.8 %id)
CA450288 Human Lung Epithelial cells, lung BPTF.b 8063 to 8384 327 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 322/395
(81 %)
0 diff
(100 %id)
AW896124 nervous_normal BPTF.b 8293 to 8491 15 to 211       197/211
(93 %)
6 diff
(97.2 %id)
AI701519 carcinoid, lung BPTF.b 8302 to 8815 1 to 514     Submitted on the opposite strand 514/514
(100 %)
0 diff
(100 %id)
BP390740 pancreatic islet BPTF.b 8350 to 8847 498 to 1       498/500
(99 %)
2 diff
(99.6 %id)
DN601889 human embryonic stem cells BPTF.b 8415 to 9121 1 to 707       707/707
(100 %)
0 diff
(100 %id)
BG399808 Kidney BPTF.b 8464 to 9190 12 to 743   available from MGC,   732/755
(96 %)
24 diff
(96.9 %id)
AW894048 nervous_normal BPTF.b 8473 to 8812 342 to 5       338/347
(97 %)
2 diff
(99.5 %id)
H87416 placenta BPTF.b 8489 to 8870 1 to 387       387/446
(86 %)
9 diff
(98.0 %id)
CR743419   BPTF.b 8514 to 8900 1 to 388       388/388
(100 %)
2 diff
(99.5 %id)
BM996255 lung, Metastatic Chondrosarcoma BPTF.b 8519 to 9228 718 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 700/700
(100 %)
12 diff
(98.3 %id)
BF332688 breast BPTF.b 8533 to 8881 8 to 356       349/356
(98 %)
9 diff
(97.5 %id)
AA234040 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.b 8540 to 8916 23 to 402     Submitted on the opposite strand 377/402
(93 %)
14 diff
(96.6 %id)
BQ021222 lung, Metastatic Chondrosarcoma BPTF.b 8560 to 9228 687 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 669/669
(100 %)
0 diff
(100 %id)
W17142 lung BPTF.b 8567 to 8857 1 to 294   fully sequenced,   294/294
(100 %)
2 diff
(99.4 %id)
BF375017 stomach BPTF.b 8573 to 9186 33 to 651       619/651
(95 %)
37 diff
(94.4 %id)
AW390494 stomach BPTF.b 8574 to 9197 12 to 629       618/643
(96 %)
27 diff
(95.9 %id)
DA282767 corpus callosum BPTF.b 8578 to 9136 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AW582002 stomach BPTF.b 8590 to 9190 12 to 608       597/633
(94 %)
19 diff
(97.0 %id)
BX098782 breast BPTF.b 8591 to 9312 1 to 722       722/722
(100 %)
1 diff
(99.9 %id)
H27235 breast BPTF.b 8591 to 9014 1 to 432       432/435
(99 %)
12 diff
(97.3 %id)
H27242 breast BPTF.b 8591 to 8963 1 to 377       377/484
(77 %)
7 diff
(98.6 %id)
H45002 breast BPTF.b 8591 to 8929 1 to 345       345/416
(82 %)
11 diff
(97.4 %id)
DR421826 eye, Pterygium BPTF.b 8614 to 9128 1 to 515       515/517
(99 %)
3 diff
(99.5 %id)
BE708240 head_neck BPTF.b 8621 to 8896 14 to 289       276/289
(95 %)
6 diff
(98.0 %id)
R84565 liver and spleen BPTF.b 8629 to 8800 1 to 172       172/172
(100 %)
2 diff
(98.9 %id)
BQ001968 lung, Metastatic Chondrosarcoma BPTF.b 8634 to 9228 613 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 595/595
(100 %)
1 diff
(99.9 %id)
AI862331 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus BPTF.b 8671 to 9228 558 to 1       558/560
(99 %)
3 diff
(99.5 %id)
AI803033 pooled BPTF.b 8672 to 8909 238 to 1       238/238
(100 %)
1 diff
(99.6 %id)
AA700432 liver and spleen BPTF.b 8675 to 9229 553 to 1       553/553
(100 %)
10 diff
(98.2 %id)
AI186130 lung BPTF.b 8687 to 9228 542 to 1       542/542
(100 %)
0 diff
(100 %id)
AI720707 colon BPTF.b 8702 to 9224 525 to 3       523/525
(99 %)
0 diff
(100 %id)
AA236286 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.b 8741 to 9250 510 to 1     Submitted on the opposite strand 510/519
(98 %)
1 diff
(99.9 %id)
BE870101 adenocarcinoma, colon BPTF.b 8742 to 9522 1 to 794       794/867
(91 %)
42 diff
(95.2 %id)
AI336961 pooled germ cell tumors BPTF.b 8750 to 9228 479 to 1       479/479
(100 %)
0 diff
(100 %id)
AW015054   BPTF.b 8753 to 9228 493 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 476/476
(100 %)
0 diff
(100 %id)
DA028856   BPTF.b 8774 to 9335 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA164675 amygdala BPTF.b 8780 to 9346 2 to 569   capped   568/568
(100 %)
4 diff
(99.3 %id)
AI698141 carcinoid, lung BPTF.b 8791 to 9228 439 to 1       439/439
(100 %)
3 diff
(99.4 %id)
BF185928 brain, glioblastoma BPTF.b 8810 to 9469 1 to 653       653/653
(100 %)
16 diff
(97.6 %id)
BQ363846 stomach BPTF.b 8812 to 9211 146 to 546       401/546
(73 %)
9 diff
(98.4 %id)
N91172 lung BPTF.b 8827 to 9228 398 to 1   fully sequenced,   398/398
(100 %)
1 diff
(99.8 %id)
BE831043 marrow BPTF.b 8835 to 9160 336 to 8       329/336
(97 %)
5 diff
(98.6 %id)
W32818 heart BPTF.b 8882 to 9111 1 to 230       230/237
(97 %)
1 diff
(99.6 %id)
BE831045 marrow BPTF.b 8884 to 9119 243 to 7       237/244
(97 %)
3 diff
(98.8 %id)
EC491758 Prostate BPTF.b 8893 to 8993 1 to 99       99/99
(100 %)
2 diff
(98.0 %id)
AA357158   BPTF.b 8914 to 9228 315 to 1     Submitted on the opposite strand 315/335
(94 %)
0 diff
(100 %id)
DB342020 thymus BPTF.b 9309 to 9829 524 to 1   tiling clone,   524/524
(100 %)
17 diff
(96.8 %id)
H44955 breast BPTF.b 9409 to 9822 418 to 1   tiling clone,   418/434
(96 %)
14 diff
(96.8 %id)
H28584 breast BPTF.b 9475 to 9832 365 to 1       365/365
(100 %)
4 diff
(99.0 %id)
AK025776   BPTF.c 1 to 3396 1 to 3397   tiling clone, available from FLJ, AAA   3397/3402
(99 %)
5 diff
(99.9 %id)
AK027184 Human lung BPTF.c 2267 to 4214 1 to 1955   tiling clone, available from FLJ, AAA   1955/1955
(100 %)
15 diff
(99.3 %id)
AA280072 germinal center B cell BPTF.c 2978 to 3507 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
BU183064 melanotic melanoma, skin BPTF.c 3212 to 4061 12 to 865   tiling clone,   854/866
(98 %)
14 diff
(98.4 %id)
BG113938 Bone, osteosarcoma, cell line BPTF.c 3356 to 3778 1 to 413       413/501
(82 %)
22 diff
(95.7 %id)
BG189415   BPTF.c 3376 to 3902 1 to 528   AAA   528/528
(100 %)
8 diff
(98.5 %id)
BG192519   BPTF.c 3377 to 3901 1 to 524       524/525
(99 %)
2 diff
(99.7 %id)
BG197611   BPTF.c 3377 to 3902 1 to 525   AAA   525/525
(100 %)
7 diff
(98.7 %id)
BG213746   BPTF.c 3377 to 3902 1 to 526   AAA   526/526
(100 %)
6 diff
(98.9 %id)
BG217510   BPTF.c 3377 to 3902 1 to 526   AAA   526/526
(100 %)
4 diff
(99.3 %id)
BG201209   BPTF.c 3380 to 3903 45 to 567       523/569
(91 %)
9 diff
(98.5 %id)
BG185203   BPTF.c 3395 to 3902 1 to 508   AAA   508/508
(100 %)
4 diff
(99.3 %id)
BG210081   BPTF.c 3395 to 3902 1 to 509   AAA   509/509
(100 %)
2 diff
(99.7 %id)
BG187296   BPTF.c 3413 to 3894 1 to 482   AAA   482/492
(97 %)
3 diff
(99.4 %id)
AA826415 carcinoid, lung BPTF.c 3448 to 3907 460 to 1       460/460
(100 %)
0 diff
(100 %id)
AW172481 pooled BPTF.c 3509 to 3902 408 to 15   AAA   394/396
(99 %)
0 diff
(100 %id)
AW117395 pooled BPTF.c 3572 to 3901 335 to 7       329/335
(98 %)
0 diff
(100 %id)
R92601 liver and spleen BPTF.c 3577 to 3887 326 to 8       319/329
(96 %)
0 diff
(100 %id)
AA948169 pooled germ cell tumors BPTF.c 3623 to 3902 280 to 1       280/280
(100 %)
0 diff
(100 %id)
AI023555   BPTF.c 3745 to 4189 445 to 1   tiling clone,   445/445
(100 %)
1 diff
(99.8 %id)
AA279991 germinal center B cell BPTF.c 3749 to 3901 153 to 1       153/153
(100 %)
0 diff
(100 %id)
EC442440 Prostate BPTF.c 3762 to 3865 1 to 104       104/104
(100 %)
0 diff
(100 %id)
BF593526 Kidney BPTF.c 3783 to 4214 431 to 1   tiling clone,   431/431
(100 %)
1 diff
(99.8 %id)
AK293224   BPTF.d 1 to 2638 1 to 2639   tiling clone,   2639/2639
(100 %)
5 diff
(99.9 %id)
BP270715 small intestine BPTF.d 1383 to 1963 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BI020310 marrow BPTF.d 1649 to 1787 138 to 2       137/138
(99 %)
0 diff
(100 %id)
BF771439 epid_tumor BPTF.d 2556 to 2940 392 to 1   tiling clone, Submitted on the opposite strand 392/392
(100 %)
19 diff
(95.2 %id)
BX110667   BPTF.e 1 to 475 1 to 475   tiling clone,   475/475
(100 %)
0 diff
(100 %id)
AK296256 thalamus BPTF.e 328 to 2790 1 to 2463   tiling clone,   2463/2463
(100 %)
1 diff
(100.0 %id)
TI_159714403   BPTF.e 2384 to 2980 664 to 68       597/1116
(53 %)
1 diff
(100.0 %id)
CB306914 Human Lung Epithelial cells, lung BPTF.e 2384 to 2959 594 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 576/581
(99 %)
1 diff
(99.9 %id)
AW974598   BPTF.e 2516 to 3099 584 to 1     Submitted on the opposite strand 584/725
(80 %)
2 diff
(99.8 %id)
AW516959 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors BPTF.e 2536 to 2959 424 to 1       424/424
(100 %)
0 diff
(100 %id)
BM550180 leukocyte BPTF.e 2536 to 3474 7 to 954       948/1058
(89 %)
24 diff
(97.8 %id)
AA580344 colon, colon tumor BPTF.e 2565 to 2960 396 to 1       396/396
(100 %)
0 diff
(100 %id)
DB490431 hypothalamus BPTF.e 2579 to 2974 1 to 396       396/396
(100 %)
2 diff
(99.5 %id)
CN353670 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.e 2582 to 2959 30 to 406   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 377/406
(92 %)
6 diff
(98.6 %id)
N76736 multiple sclerosis lesions BPTF.e 2613 to 2715 1 to 103       103/103
(100 %)
0 diff
(100 %id)
AA648987 germinal center B cell BPTF.e 2623 to 3106 487 to 4       484/487
(99 %)
0 diff
(100 %id)
EC495554 Prostate BPTF.e 2624 to 2736 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
EC467186 Prostate BPTF.e 2625 to 2736 5 to 118       114/118
(96 %)
6 diff
(95.0 %id)
AA252844 germinal center B cell BPTF.e 2653 to 2960 1 to 308       308/308
(100 %)
0 diff
(100 %id)
AW418631 carcinoid, lung BPTF.e 2656 to 2934 1 to 279     Submitted on the opposite strand 279/279
(100 %)
2 diff
(99.3 %id)
BE327236 carcinoid, lung BPTF.e 2656 to 2934 1 to 279     Submitted on the opposite strand 279/279
(100 %)
2 diff
(99.3 %id)
BE868740 adenocarcinoma, colon BPTF.e 2658 to 3262 1 to 603       603/603
(100 %)
7 diff
(98.9 %id)
BI494854 cochlea, ear BPTF.e 2694 to 2959 8 to 273   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 266/273
(97 %)
6 diff
(97.9 %id)
W74679 heart BPTF.e 2702 to 3176 1 to 486   fully sequenced,   486/486
(100 %)
18 diff
(96.3 %id)
BF091945 testis_normal BPTF.e 2732 to 3166 437 to 3       435/437
(99 %)
0 diff
(100 %id)
BI494853 cochlea, ear BPTF.e 2734 to 2958 243 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 225/225
(100 %)
0 diff
(100 %id)
TI_159701058   BPTF.e 2742 to 3561 933 to 129       805/1086
(74 %)
0 diff
(100 %id)
CB216388 normal endometrium, mid-secretory phase,cycle day 23, uterus BPTF.e 2745 to 3379 1 to 635   tiling clone,   635/635
(100 %)
1 diff
(99.9 %id)
TI_57177930   BPTF.e 2774 to 3558 105 to 875       771/875
(88 %)
6 diff
(99.4 %id)
BI766147 pooled lung and spleen BPTF.e 2775 to 3558 1 to 770       770/770
(100 %)
19 diff
(97.6 %id)
AW582000 stomach BPTF.e 2781 to 3427 654 to 13       642/655
(98 %)
0 diff
(100 %id)
AW609218 stomach BPTF.e 2802 to 3401 649 to 48       602/649
(92 %)
0 diff
(100 %id)
F05276 brain, total brain BPTF.e 2824 to 3105 1 to 282       282/282
(100 %)
2 diff
(99.3 %id)
AA425478   BPTF.e 2824 to 2960 1 to 137       137/137
(100 %)
0 diff
(100 %id)
R14173 whole brain BPTF.e 2825 to 2960 1 to 136       136/136
(100 %)
2 diff
(98.6 %id)
AA425278   BPTF.e 3124 to 3563 443 to 4   tiling clone,   440/443
(99 %)
0 diff
(100 %id)
N59267 multiple sclerosis lesions BPTF.e 3144 to 3561 426 to 1   tiling clone,   426/437
(97 %)
10 diff
(97.8 %id)
W74710 heart BPTF.e 3146 to 3562 424 to 1   fully sequenced,   424/424
(100 %)
11 diff
(97.5 %id)
Z38300 brain, total brain BPTF.e 4584 to 4784 201 to 1   tiling clone,   201/201
(100 %)
0 diff
(100 %id)
AL833375 lymph node BPTF.f 1 to 4042 10 to 4051 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 4042/4043
(99 %)
9 diff
(99.8 %id)
CN353671 embryonic stem cells, DMSO-treated H9 cellline BPTF.f 1145 to 1694 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
CV348653 head_normal BPTF.f 1218 to 1711 1 to 494       494/494
(100 %)
35 diff
(93.0 %id)
BG995421 head_neck BPTF.f 1224 to 1682 1 to 458       458/458
(100 %)
10 diff
(97.9 %id)
BC050566 Eye, retinoblastoma BPTF.f 1230 to 2816 1 to 1587   available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1587/1587
(100 %)
2 diff
(99.9 %id)
BE782463 eye, retinoblastoma BPTF.f 1249 to 1892 1 to 652   available from MGC,   652/652
(100 %)
23 diff
(96.5 %id)
BM713520 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.f 1365 to 1761 1 to 397   fully sequenced, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 397/397
(100 %)
0 diff
(100 %id)
BC067234 Kidney BPTF.f 1442 to 2819 4 to 1381   available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1378/1383
(99 %)
3 diff
(99.8 %id)
BU739549 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.f 1700 to 2217 536 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 518/518
(100 %)
0 diff
(100 %id)
TI_149313877   BPTF.f 1918 to 2818 962 to 85   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 878/976
(89 %)
35 diff
(96.5 %id)
AW390459 stomach BPTF.f 2058 to 2721 677 to 18       660/677
(97 %)
0 diff
(100 %id)
AW609219 stomach BPTF.f 2099 to 2659 641 to 80       562/642
(87 %)
0 diff
(100 %id)
BE937230 stomach BPTF.f 2099 to 2717 616 to 1       616/619
(99 %)
13 diff
(97.9 %id)
DB268606 uterus BPTF.f 2102 to 2661 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
TI_149276413   BPTF.f 2107 to 2817 803 to 97       707/966
(73 %)
0 diff
(100 %id)
AA333683   BPTF.f 2113 to 2441 1 to 332       332/333
(99 %)
10 diff
(97.0 %id)
CA390796 eye, RPE/choroid BPTF.f 2113 to 2708 1 to 596       596/596
(100 %)
3 diff
(99.5 %id)
BG393106 embryonal carcinoma, cell line, testis BPTF.f 2121 to 2815 1 to 691       691/695
(99 %)
13 diff
(98.2 %id)
BQ575828 Chondrosarcoma Grade II, Left Pelvis BPTF.f 2123 to 2822 719 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 701/717
(97 %)
4 diff
(99.5 %id)
CB305710 lung, Primary Lung Cystic Fibrosis EpithelialCells BPTF.f 2127 to 2818 708 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 692/695
(99 %)
4 diff
(99.5 %id)
BU674038 lung, Primary Lung Epithelial Cells BPTF.f 2133 to 2756 20 to 643     Submitted on the opposite strand 624/643
(97 %)
6 diff
(99.1 %id)
H02382 placenta BPTF.f 2138 to 2512 1 to 386   fully sequenced,   386/386
(100 %)
9 diff
(97.7 %id)
T35574 lung BPTF.f 2140 to 2490 1 to 354       354/362
(97 %)
5 diff
(98.7 %id)
D12400 Liver BPTF.f 2168 to 2333 1 to 166       166/166
(100 %)
1 diff
(99.4 %id)
C14910   BPTF.f 2201 to 2517 1 to 320       320/320
(100 %)
11 diff
(96.6 %id)
AV704301 adrenal gland BPTF.f 2201 to 2823 1 to 623       623/741
(84 %)
15 diff
(98.0 %id)
AV727211 hypothalamus BPTF.f 2201 to 2823 1 to 621       621/639
(97 %)
10 diff
(98.5 %id)
AW894285 nervous_normal BPTF.f 2213 to 2582 17 to 382       366/382
(95 %)
6 diff
(98.5 %id)
AW903587 nervous_normal BPTF.f 2213 to 2582 17 to 382       366/382
(95 %)
6 diff
(98.5 %id)
BG619260 placenta BPTF.f 2217 to 2811 1 to 595   AAA   595/604
(98 %)
9 diff
(98.6 %id)
BQ020454 Fibrosarcoma BPTF.f 2218 to 2822 621 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 605/605
(100 %)
4 diff
(99.4 %id)
AW975302   BPTF.f 2219 to 2821 604 to 1     Submitted on the opposite strand 604/606
(99 %)
9 diff
(98.6 %id)
AA541375 metastatic prostate bone lesion BPTF.f 2241 to 2654 9 to 421       413/421
(98 %)
6 diff
(98.6 %id)
BU677220 lung, Primary Lung Epithelial Cells BPTF.f 2258 to 2817 580 to 23       558/580
(96 %)
0 diff
(100 %id)
BF909211 uterus_tumor BPTF.f 2272 to 2437 184 to 20     Submitted on the opposite strand 165/184
(89 %)
0 diff
(100 %id)
AI479002 B-cell, chronic lymphotic leukemia BPTF.f 2277 to 2822 546 to 1   tiling clone,   546/546
(100 %)
0 diff
(100 %id)
AW006220 anaplastic oligodendroglioma, brain BPTF.f 2285 to 2819 553 to 19       535/553
(96 %)
0 diff
(100 %id)
BG413512 pooled BPTF.f 2285 to 2817 538 to 6       533/538
(99 %)
0 diff
(100 %id)
BF885790 testis_normal BPTF.f 2292 to 2437 1 to 146       146/152
(96 %)
6 diff
(96.1 %id)
BG413496 pooled BPTF.f 2304 to 2817 518 to 6       513/518
(99 %)
0 diff
(100 %id)
BG497531 adenocarcinoma, Prostate BPTF.f 2311 to 2771 1 to 464       464/895
(51 %)
12 diff
(98.7 %id)
BP386727 pancreatic islet BPTF.f 2325 to 2817 1 to 494     Submitted on the opposite strand 494/500
(98 %)
4 diff
(99.2 %id)
N51384 multiple sclerosis lesions BPTF.f 2326 to 2818 494 to 1       494/495
(99 %)
3 diff
(99.4 %id)
BP383900 pancreatic islet BPTF.f 2329 to 2819 1 to 493     Submitted on the opposite strand 493/499
(98 %)
5 diff
(99.0 %id)
AI142472 uterus BPTF.f 2331 to 2818 488 to 1       488/488
(100 %)
4 diff
(99.2 %id)
AA659902 normal prostate, Prostate BPTF.f 2345 to 2822 478 to 1       478/478
(100 %)
4 diff
(99.2 %id)
BE644885 pooled BPTF.f 2360 to 2819 460 to 1       460/460
(100 %)
2 diff
(99.6 %id)
AA534253 invasive prostate tumor, Prostate BPTF.f 2362 to 2766 403 to 1       403/403
(100 %)
16 diff
(96.1 %id)
DB560752 hypothalamus BPTF.f 2369 to 2818 1 to 454     Submitted on the opposite strand 454/454
(100 %)
5 diff
(98.9 %id)
D58103   BPTF.f 2371 to 2747 1 to 378       378/378
(100 %)
6 diff
(98.5 %id)
AA804452 germinal center B cell BPTF.f 2402 to 2766 365 to 1       365/365
(100 %)
1 diff
(99.8 %id)
BI046190 prostate_normal BPTF.f 2404 to 2976 572 to 1   tiling clone,   572/578
(98 %)
5 diff
(99.2 %id)
AI191286 lung BPTF.f 2417 to 2819 405 to 3       403/409
(98 %)
0 diff
(100 %id)
AI864639 pooled BPTF.f 2427 to 2819 393 to 1       393/393
(100 %)
2 diff
(99.5 %id)
AI122991 pooled BPTF.f 2431 to 2819 389 to 1       389/389
(100 %)
1 diff
(99.8 %id)
AW197903 pooled BPTF.f 2436 to 2819 396 to 3       394/396
(99 %)
0 diff
(100 %id)
AA252812.
matches multiple genes
germinal center B cell BPTF.f 2458 to 2820 363 to 1     Submitted on the opposite strand, also hits gene BASP1 363/363
(100 %)
1 diff
(99.8 %id)
AA467779   BPTF.f 2458 to 2767 1 to 310       310/310
(100 %)
4 diff
(98.8 %id)
AW130113 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors BPTF.f 2459 to 2766 308 to 1       308/308
(100 %)
2 diff
(99.4 %id)
AW872897 squamous cell carcinoma, tongue BPTF.f 2459 to 2766 308 to 1       308/308
(100 %)
1 diff
(99.7 %id)
AA469450   BPTF.f 2462 to 2766 305 to 1       305/315
(96 %)
0 diff
(100 %id)
CN353667 embryonic stem cells, DMSO-treated H9 cellline BPTF.f 2465 to 2816 1 to 352       352/352
(100 %)
3 diff
(99.2 %id)
AA789290   BPTF.f 2467 to 2818 378 to 27   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 352/352
(100 %)
1 diff
(99.8 %id)
AA906959 carcinoid, lung BPTF.f 2469 to 2818 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
AA935730 carcinoid, lung BPTF.f 2469 to 2818 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
BG994095 head_neck BPTF.f 2475 to 2820 1 to 347       347/347
(100 %)
9 diff
(97.5 %id)
BP387119 pancreatic islet BPTF.f 2477 to 2797 1 to 322     Submitted on the opposite strand 322/322
(100 %)
7 diff
(97.9 %id)
H02279 placenta BPTF.f 2482 to 2817 350 to 1   fully sequenced,   350/350
(100 %)
8 diff
(97.8 %id)
AI990477 pooled germ cell tumors BPTF.f 2483 to 2818 351 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 337/337
(100 %)
3 diff
(99.2 %id)
BE504778 pooled germ cell tumors BPTF.f 2483 to 2819 337 to 2       336/337
(99 %)
0 diff
(100 %id)
D57881   BPTF.f 2488 to 2786 1 to 299       299/299
(100 %)
3 diff
(99.0 %id)
BE673319 Prostate BPTF.f 2489 to 2818 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
AA721144 germinal center B cell BPTF.f 2516 to 2766 251 to 1       251/251
(100 %)
0 diff
(100 %id)
BM720293 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid BPTF.f 2520 to 2822 1 to 303   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 303/303
(100 %)
1 diff
(99.7 %id)
AI341486   BPTF.f 2546 to 2819 298 to 25       274/300
(91 %)
0 diff
(100 %id)
AA765502 germinal center B cell BPTF.f 2586 to 2766 181 to 1       181/181
(100 %)
0 diff
(100 %id)
Z18803   BPTF.f 2588 to 2818 248 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 230/230
(100 %)
2 diff
(99.2 %id)
FN131444 breast carcinoma BPTF.f 2606 to 2695 1 to 88       88/89
(98 %)
4 diff
(95.6 %id)
BE866105 bladder, carcinoma, cell line BPTF.f 2934 to 3621 1 to 662       662/668
(99 %)
64 diff
(90.5 %id)
BX093326 brain BPTF.f 2986 to 3769 1 to 787       787/787
(100 %)
6 diff
(99.3 %id)
H21410 brain BPTF.f 2986 to 3430 1 to 448       448/450
(99 %)
4 diff
(99.2 %id)
BM352441 Pancreas, Purified pancreatic islet BPTF.f 3007 to 3500 1 to 494       494/494
(100 %)
3 diff
(99.4 %id)
BM703035 eye, human retina BPTF.f 3061 to 3536 1 to 476   fully sequenced, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 476/476
(100 %)
0 diff
(100 %id)
CK822394 Pancreas, Purified pancreatic islet BPTF.f 3070 to 3629 1 to 560     Submitted on the opposite strand 560/560
(100 %)
0 diff
(100 %id)
CD104789 Pooled-Skin BPTF.f 3084 to 3805 1 to 734       734/817
(89 %)
19 diff
(97.7 %id)
CK822395 Pancreas, Purified pancreatic islet BPTF.f 3348 to 3792 446 to 1     Submitted on the opposite strand 446/446
(100 %)
3 diff
(99.4 %id)
BM352121 Pancreas, Purified pancreatic islet BPTF.f 3393 to 3828 446 to 11   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 436/436
(100 %)
3 diff
(99.4 %id)
AI735696 aorta BPTF.f 3478 to 4044 569 to 3       567/569
(99 %)
0 diff
(100 %id)
AI979257 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors BPTF.f 3517 to 4037 527 to 8       520/527
(98 %)
0 diff
(100 %id)
BU729258 eye, human retina BPTF.f 3534 to 4042 527 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 509/509
(100 %)
2 diff
(99.7 %id)
AW073401 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma BPTF.f 3555 to 4042 490 to 3   tiling clone,   488/490
(99 %)
0 diff
(100 %id)
H21369 brain BPTF.f 3637 to 4028 401 to 9       393/401
(98 %)
0 diff
(100 %id)
AA578878 Schwannoma tumor BPTF.f 3676 to 4042 367 to 1       367/367
(100 %)
2 diff
(99.5 %id)
AW088870 brain, tumor, 5 pooled (see description) BPTF.f 3700 to 4042 344 to 2       343/344
(99 %)
0 diff
(100 %id)
AI470900 Kidney BPTF.f 3724 to 4042 332 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 319/319
(100 %)
2 diff
(99.4 %id)
BC039881 Cervix, carcinoma BPTF.g 1 to 1581 12 to 1592 exact tiling clone, available from MGC, AAA   1581/1581
(100 %)
0 diff
(100 %id)
BG621459 placenta BPTF.g 954 to 1590 1 to 637   tiling clone,   637/648
(98 %)
6 diff
(99.1 %id)
AI650915 Kidney BPTF.g 1087 to 1581 495 to 1       495/495
(100 %)
0 diff
(100 %id)
AI192751 lung BPTF.g 1103 to 1581 479 to 1       479/479
(100 %)
0 diff
(100 %id)
BF219204 brain, glioblastoma BPTF.g 1138 to 1850 1 to 724       724/797
(90 %)
59 diff
(92.6 %id)
AA169547   BPTF.g 1204 to 1578 30 to 407   fully sequenced,   378/407
(92 %)
10 diff
(97.6 %id)
AA169449   BPTF.g 1226 to 1581 356 to 1   fully sequenced,   356/356
(100 %)
0 diff
(100 %id)
AA213399 germinal center B cell BPTF.g 1587 to 1785 1 to 209   tiling clone,   209/209
(100 %)
6 diff
(97.2 %id)
BM458331 lymph, lymphoma, cell line BPTF.h 1 to 1076 1 to 1086   tiling clone,   1086/1086
(100 %)
27 diff
(97.6 %id)
DA486972 brain BPTF.h 611 to 1180 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
AI203700   BPTF.h 677 to 1104 430 to 3       428/430
(99 %)
0 diff
(100 %id)
AI218116 pooled BPTF.h 885 to 1192 309 to 2       308/309
(99 %)
0 diff
(100 %id)
CV572342 cornea, eye BPTF.h 1174 to 1789 1 to 619   tiling clone,   619/619
(100 %)
5 diff
(99.2 %id)
CN315382 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells BPTF.h 1376 to 2114 11 to 753   tiling clone,   743/753
(98 %)
6 diff
(99.3 %id)
M85986   BPTF.h 1469 to 1859 402 to 8   tiling clone,   395/402
(98 %)
0 diff
(100 %id)
BQ050455 leiomyosarcoma, uterus BPTF.i 1 to 939 1 to 957   tiling clone,   957/1055
(90 %)
41 diff
(96.2 %id)
AW970862   BPTF.i 34 to 469 76 to 511       436/511
(85 %)
6 diff
(98.9 %id)
AA494027 liposarcoma BPTF.i 47 to 486 1 to 440       440/440
(100 %)
4 diff
(99.1 %id)
T81480 liver and spleen BPTF.i 135 to 428 301 to 4       298/316
(94 %)
0 diff
(100 %id)
AU120882 whole embryo, mainly body BPTF.i 756 to 1520 2 to 764   tiling clone, to resequence, capped   763/768
(99 %)
6 diff
(99.3 %id)
DB359724 whole embryo, mainly body BPTF.i 2009 to 2555 548 to 1   tiling clone, to resequence,   548/556
(98 %)
12 diff
(97.9 %id)
BG532502 embryonal carcinoma, testis BPTF.j 1 to 782 1 to 803   tiling clone,   803/803
(100 %)
22 diff
(97.3 %id)
AA146707 colon, tumor BPTF.j 379 to 787 1 to 412   tiling clone,   412/412
(100 %)
3 diff
(99.3 %id)
AI791696 2 pooled tumors (clear cell type), Kidney BPTF.k-u 1 to 508 1 to 509   tiling clone,   509/509
(100 %)
3 diff
(99.5 %id)
AA338690 brain BPTF.k-u 35 to 298 1 to 264       264/264
(100 %)
1 diff
(99.7 %id)
BM998996 lung, Lung Focal Fibrosis BPTF.k-u 129 to 539 426 to 16   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 411/434
(94 %)
0 diff
(100 %id)
CD370808 Alveolar Macrophage, lung BPTF.k-u 479 to 988 528 to 19   AAA   510/512
(99 %)
0 diff
(100 %id)
AI733360 2 pooled tumors (clear cell type), Kidney BPTF.k-u 483 to 995 514 to 2   tiling clone,   513/516
(99 %)
0 diff
(100 %id)
AA938284 2 pooled tumors (clear cell type), Kidney BPTF.k-u 565 to 995 431 to 2       430/431
(99 %)
0 diff
(100 %id)
AI243695 pooled BPTF.k-u 627 to 995 373 to 5       369/373
(98 %)
0 diff
(100 %id)
AI651563 Kidney BPTF.k-u 733 to 990 288 to 31   AAA   258/258
(100 %)
5 diff
(98.1 %id)
DA203599 brain BPTF.l 1 to 578 2 to 579 exact tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BQ309169 breast BPTF.m 1 to 378 400 to 24 L12* tiling clone,   377/400
(94 %)
4 diff
(99.0 %id)
TI_154103642   BPTF.n 1 to 596 642 to 61 I2M G3A C4V D5I R6V ... tiling clone,   582/808
(72 %)
15 diff
(98.2 %id)
CA445868 Chondrosarcoma, Left Pelvis BPTF.n 131 to 576 462 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 444/444
(100 %)
2 diff
(99.6 %id)
AI078762 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BPTF.n 145 to 578 434 to 1   tiling clone,   434/434
(100 %)
0 diff
(100 %id)
AK022081 whole embryo, mainly body BPTF.o 1 to 2120 2 to 2123 exact tiling clone, available from FLJ,   2123/2123
(100 %)
10 diff
(99.6 %id)
AU120942 whole embryo, mainly body BPTF.o 1 to 795 2 to 796   capped   795/799
(99 %)
8 diff
(99.0 %id)
BF828350 head_normal BPTF.o 961 to 1309 350 to 2     Submitted on the opposite strand 349/350
(99 %)
0 diff
(100 %id)
BF828986 head_normal BPTF.o 961 to 1309 350 to 2     Submitted on the opposite strand 349/350
(99 %)
0 diff
(100 %id)
AU146870 whole embryo, mainly body BPTF.o 1565 to 2120 556 to 1       556/556
(100 %)
8 diff
(98.6 %id)
BU556662 ovary, teratocarcinoma, cell line BPTF.p 1 to 908 1 to 907   tiling clone,   907/932
(97 %)
9 diff
(99.1 %id)
AK022177 mammary gland BPTF.p 207 to 2184 1 to 1979 N105S M106V tiling clone, available from FLJ,   1979/1979
(100 %)
16 diff
(99.2 %id)
AU121406 mammary gland BPTF.p 208 to 1003 2 to 801   to resequence, capped   800/806
(99 %)
16 diff
(98.1 %id)
AU147226 mammary gland BPTF.p 1639 to 2184 545 to 1   tiling clone, to resequence,   545/549
(99 %)
14 diff
(97.5 %id)
DA095667 cerebellum BPTF.p 1892 to 2459 2 to 570   tiling clone, capped   569/569
(100 %)
7 diff
(98.8 %id)
DB298677 cerebellum BPTF.p 3212 to 3689 478 to 1   tiling clone,   478/478
(100 %)
0 diff
(100 %id)
AA089851   BPTF.q-u 1 to 231 1 to 230   tiling clone,   230/230
(100 %)
16 diff
(93.1 %id)
BU162932 ductal carcinoma, cell line, Pancreas BPTF.q-u 77 to 1017 1 to 950   tiling clone,   950/1021
(93 %)
28 diff
(97.3 %id)
BF767584 colon_normal BPTF.q-u 843 to 1184 34 to 379 F3L C8M H9P I10Y F13I ... tiling clone,   346/383
(90 %)
27 diff
(93.0 %id)
BF674448 Prostate BPTF.r-u -9 to 679 1 to 671 E15K T16L D17M V18* tiling clone,   671/880
(76 %)
43 diff
(95.2 %id)
DB236330 trachea BPTF.r-u 1 to 521 2 to 523 S37G tiling clone, capped   522/522
(100 %)
3 diff
(99.5 %id)
AA781177   BPTF.r-u 405 to 1006 603 to 2   tiling clone,   602/603
(99 %)
0 diff
(100 %id)
DA411411 thalamus BPTF.s 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
4 diff
(99.3 %id)
BF086961 head_neck BPTF.s 83 to 591 34 to 543   tiling clone,   510/544
(93 %)
8 diff
(98.6 %id)
BG961173 colon BPTF.t-u 1 to 567 582 to 16 exact tiling clone,   567/591
(95 %)
6 diff
(99.0 %id)
BE720774 head_neck BPTF.u-u 1 to 391 13 to 399   tiling clone,   387/399
(96 %)
6 diff
(98.5 %id)
AA345753 gall bladder BPTF.va-u 1 to 216 1 to 216 exact tiling clone,   216/217
(99 %)
1 diff
(99.6 %id)
AW364180 denis_drash BPTF.va-u 43 to 370 329 to 1   tiling clone,   329/329
(100 %)
3 diff
(99.1 %id)
T90610 lung BPTF.vb-u 1 to 336 1 to 344 A17P T18L K19S L20C S21Q ... tiling clone,   344/393
(87 %)
17 diff
(95.7 %id)
AA525942 ovary BPTF.vc-u 1 to 308 8 to 316 exact tiling clone,   309/360
(85 %)
6 diff
(98.4 %id)
AW753515 colon BPTF.vd-u 1 to 286 1 to 286 S2G tiling clone,   286/304
(94 %)
5 diff
(98.4 %id)
AJ277303 entorhinal cortex, stomach Gene BPTF, variant not shown              
AA332058 Embryo, 8 weeks Gene BPTF, variant not shown         Suspected internal deletion, this clone was ignored    
AV708970 adrenal gland Gene BPTF, variant not shown         Suspected internal deletion, this clone was ignored    
AK130939 uterus Gene BPTF, variant not shown       available from FLJ,      
AK297281 brain Gene BPTF, variant not shown         Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
AW853667 colon Gene BPTF, variant not shown              
BQ348260 head_neck Gene BPTF, variant not shown         Suspected internal deletion, this clone was ignored    
CN283470 embryonic stem cells, cell lines H1, H7, andH9 Gene BPTF, variant not shown         Suspected internal deletion, this clone was ignored    
DW449262 Liver Gene BPTF, variant not shown              
DC350712 brain Gene BPTF, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
DB355920 whole embryo, mainly head Gene BPTF, variant not shown              
DA569298 whole embryo, mainly head Gene BPTF, variant not shown       capped      
BF111386 carcinoid, lung Gene BPTF, variant not shown              
CA488069   Gene BPTF, variant not shown       AAA This clone was ignored    
CD516292 White Matter Gene BPTF, variant not shown         Suspected internal deletion, this clone was ignored    
CB134194 Liver Gene BPTF, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BM677248 eye, fetal eye Gene BPTF, variant not shown       AAA This clone was ignored    
BM721645 eye, fetal eye Gene BPTF, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m, .n, .o, .p, .q-u, .r-u, .s, .t-u, .u-u, .va-u, .vb-u, .vc-u, .vd-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI