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Gene ETV6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
265 supporting clones for gene ETV6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI672643 thymus, pooled ETV6.a 1 to 292 1 to 292   tiling clone, Submitted on the opposite strand 292/292
(100 %)
1 diff
(99.7 %id)
AW182517 pooled ETV6.a 1 to 173 1 to 173     Submitted on the opposite strand 173/173
(100 %)
2 diff
(98.9 %id)
BC043399 Testis, embryonal carcinoma ETV6.a 259 to 2463 1 to 2204 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2204/2204
(100 %)
2 diff
(100.0 %id)
NM_001987.4   ETV6.a 259 to 6234 1 to 5976 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 5976/5976
(100 %)
0 diff
(100 %id)
BQ430842 embryonal carcinoma, cell line, testis ETV6.a 261 to 1133 1 to 883       883/884
(99 %)
17 diff
(98.1 %id)
DB189439 lung, tumor tissue ETV6.a 411 to 606 2 to 197   capped   196/196
(100 %)
0 diff
(100 %id)
DR002910 fetal brain ETV6.a 416 to 901 1 to 486       486/486
(100 %)
3 diff
(99.4 %id)
U11732 leukemia ETV6.a 509 to 2088 1 to 1580 exact     1580/1580
(100 %)
0 diff
(100 %id)
TI_1948212118   ETV6.a 532 to 1316 129 to 919       791/1208
(65 %)
14 diff
(98.9 %id)
TI_1948212263   ETV6.a 532 to 1257 141 to 871   fully sequenced,   731/871
(83 %)
10 diff
(98.9 %id)
TI_1948212400   ETV6.a 532 to 1181 152 to 815       664/1292
(51 %)
28 diff
(97.9 %id)
EL734454 mixed ETV6.a 533 to 1233 1 to 701       701/701
(100 %)
2 diff
(99.8 %id)
Z35761 blood ETV6.a 533 to 995 1 to 463       463/549
(84 %)
1 diff
(99.9 %id)
BU172383 melanotic melanoma, skin ETV6.a 560 to 1348 1 to 794       794/852
(93 %)
34 diff
(96.1 %id)
AI902708 breast ETV6.a 631 to 937 307 to 1       307/308
(99 %)
9 diff
(97.1 %id)
DQ841178   ETV6.a 694 to 2000 521 to 1827       1307/1827
(71 %)
6 diff
(99.7 %id)
BE933501 head_neck ETV6.a 891 to 1092 208 to 6       203/208
(97 %)
1 diff
(99.6 %id)
AW503299 lymph ETV6.a 955 to 1462 1 to 508       508/508
(100 %)
3 diff
(99.5 %id)
TI_154159154   ETV6.a 961 to 1632 89 to 759       671/671
(100 %)
13 diff
(98.1 %id)
BQ641481 eye, normal pigmented retinal epithelium ETV6.a 1044 to 1685 74 to 720       647/1014
(63 %)
19 diff
(98.2 %id)
BQ326596 colon_normal ETV6.a 1081 to 1494 38 to 445       408/445
(91 %)
6 diff
(98.7 %id)
BQ368003 placenta_normal ETV6.a 1118 to 1690 13 to 577       565/596
(94 %)
14 diff
(97.7 %id)
TI_1948212264   ETV6.a 1227 to 1890 795 to 122   fully sequenced,   674/795
(84 %)
4 diff
(99.5 %id)
CD699712 normal nasopharynx ETV6.a 1262 to 1684 23 to 444       422/448
(94 %)
10 diff
(97.8 %id)
AI909914 breast ETV6.a 1293 to 1404 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
TI_1948212119   ETV6.a 1339 to 1890 679 to 123       557/1292
(43 %)
41 diff
(96.9 %id)
BF757365 colon ETV6.a 1439 to 1618 7 to 182       176/184
(95 %)
8 diff
(95.7 %id)
TI_149297247   ETV6.a 1469 to 2311 891 to 61   AAA   831/964
(86 %)
11 diff
(98.9 %id)
CB528418 Aveolar Macrophage, lung ETV6.a 1562 to 2311 765 to 17   AAA   749/749
(100 %)
4 diff
(99.5 %id)
TI_159713848   ETV6.a 1578 to 2463 963 to 88   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 876/1020
(85 %)
30 diff
(97.1 %id)
AA234326 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 1595 to 1807 1 to 211       211/211
(100 %)
3 diff
(98.6 %id)
AA773253 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 1596 to 1925 1 to 330       330/330
(100 %)
0 diff
(100 %id)
CN314943 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells ETV6.a 1604 to 2347 15 to 764       750/764
(98 %)
13 diff
(98.3 %id)
AW007246 adenocarcinoma, Pancreas ETV6.a 1617 to 2311 719 to 15   AAA   705/706
(99 %)
27 diff
(96.2 %id)
BM982346 lung, Primary Lung Cystic Fibrosis EpithelialCells ETV6.a 1679 to 2311 649 to 17   AAA   633/633
(100 %)
0 diff
(100 %id)
TI_149272279   ETV6.a 1687 to 2482 927 to 139   AAA   789/1085
(72 %)
14 diff
(98.8 %id)
CB243807 Human Lung Epithelial cells, lung ETV6.a 1742 to 2445 721 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 703/703
(100 %)
1 diff
(99.9 %id)
BG741145 skin ETV6.a 1763 to 2564 1 to 805       805/807
(99 %)
32 diff
(96.1 %id)
CB851871 Human Lung Epithelial cells, lung ETV6.a 1792 to 2469 694 to 13       682/694
(98 %)
0 diff
(100 %id)
BE217961 carcinoid, lung ETV6.a 1802 to 2291 490 to 1       490/490
(100 %)
7 diff
(98.6 %id)
AI692672 carcinoid, lung ETV6.a 1803 to 2448 646 to 1       646/647
(99 %)
5 diff
(99.3 %id)
BG413466 pooled ETV6.a 1817 to 2314 501 to 4       498/504
(98 %)
0 diff
(100 %id)
T84624 liver and spleen ETV6.a 1823 to 2097 1 to 290   fully sequenced,   290/290
(100 %)
9 diff
(96.9 %id)
BU623106 cell lines, Chondrosarcoma ETV6.a 1851 to 2472 640 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 622/622
(100 %)
0 diff
(100 %id)
T79261 liver and spleen ETV6.a 1857 to 2118 1 to 261   fully sequenced,   261/261
(100 %)
4 diff
(98.5 %id)
AI123680 pooled ETV6.a 1866 to 2314 450 to 1       450/450
(100 %)
2 diff
(99.6 %id)
BF510432   ETV6.a 1890 to 2445 575 to 18   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 558/575
(97 %)
3 diff
(99.5 %id)
CA309586 Alveolar Macrophage, lung ETV6.a 1890 to 2486 615 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 597/597
(100 %)
0 diff
(100 %id)
AI718342 colon ETV6.a 1946 to 2311 366 to 1       366/366
(100 %)
1 diff
(99.8 %id)
AA527153 breast ETV6.a 1957 to 2429 473 to 1       473/547
(86 %)
13 diff
(97.7 %id)
BE076616 breast ETV6.a 1972 to 2319 355 to 4     Submitted on the opposite strand 352/358
(98 %)
0 diff
(100 %id)
AI690689 serous papillary carcinoma, high grade, 2pooled tumors, uterus ETV6.a 1993 to 2493 501 to 3       499/501
(99 %)
0 diff
(100 %id)
AW972388   ETV6.a 1997 to 2462 468 to 1     Submitted on the opposite strand 468/469
(99 %)
23 diff
(95.1 %id)
AW263213 pooled ETV6.a 1999 to 2486 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
AI630840 carcinoid, lung ETV6.a 2021 to 2291 270 to 1       270/270
(100 %)
4 diff
(98.6 %id)
BE348335 carcinoid, lung ETV6.a 2021 to 2291 271 to 1       271/271
(100 %)
3 diff
(98.9 %id)
BQ024180 placenta ETV6.a 2025 to 2481 456 to 1       456/456
(100 %)
6 diff
(98.7 %id)
AA641858 germinal center B cell ETV6.a 2045 to 2217 172 to 1       172/172
(100 %)
1 diff
(99.5 %id)
AA654173 germinal center B cell ETV6.a 2051 to 2391 406 to 71   AAA   336/381
(88 %)
0 diff
(100 %id)
AA827307 Kidney, kidney tumor ETV6.a 2061 to 2463 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
AW470787 2 pooled tumors (clear cell type), Kidney ETV6.a 2061 to 2487 432 to 6       427/432
(98 %)
0 diff
(100 %id)
AA831368 germinal center B cell ETV6.a 2062 to 2486 434 to 11   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 424/424
(100 %)
1 diff
(99.8 %id)
AW663067 pooled ETV6.a 2066 to 2494 429 to 1   tiling clone,   429/429
(100 %)
0 diff
(100 %id)
T91395 liver and spleen ETV6.a 2067 to 2434 377 to 1   fully sequenced,   377/377
(100 %)
9 diff
(97.7 %id)
BQ888640 dorsal root ganglia ETV6.a 2077 to 2725 1 to 653       653/1088
(60 %)
29 diff
(97.4 %id)
BE220098 carcinoid, lung ETV6.a 2079 to 2291 213 to 1       213/213
(100 %)
1 diff
(99.6 %id)
AI813471 2 pooled tumors (clear cell type), Kidney ETV6.a 2080 to 2478 412 to 14   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 399/399
(100 %)
3 diff
(99.3 %id)
T79177 liver and spleen ETV6.a 2088 to 2446 360 to 1   fully sequenced,   360/360
(100 %)
3 diff
(99.2 %id)
AA262997 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 2091 to 2444 353 to 1       353/353
(100 %)
3 diff
(99.2 %id)
AI335729 uterus ETV6.a 2094 to 2291 198 to 1       198/198
(100 %)
6 diff
(97.0 %id)
AA983191 2 pooled tumors (clear cell type), Kidney ETV6.a 2144 to 2477 336 to 3       334/336
(99 %)
0 diff
(100 %id)
AI702233 carcinoid, lung ETV6.a 2184 to 2291 109 to 1       109/109
(100 %)
1 diff
(99.1 %id)
CB996610 placenta, pre-eclamptic placenta ETV6.a 2188 to 2867 27 to 716   tiling clone,   690/866
(79 %)
21 diff
(97.6 %id)
CB991555 placenta, pre-eclamptic placenta ETV6.a 2188 to 2640 27 to 481       455/1115
(40 %)
4 diff
(99.7 %id)
AA810450 germinal center B cell ETV6.a 2192 to 2454 263 to 1       263/263
(100 %)
3 diff
(98.9 %id)
BM144725 leukopheresis ETV6.a 2197 to 2443 265 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 250/250
(100 %)
16 diff
(93.6 %id)
BQ188457 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ETV6.a 2203 to 2456 257 to 4   AAA Submitted on the opposite strand 254/267
(95 %)
0 diff
(100 %id)
BM719175 eye, fetal eye ETV6.a 2206 to 2484 29 to 306   fully sequenced, Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 278/306
(90 %)
8 diff
(97.4 %id)
CB243804 Human Lung Epithelial cells, lung ETV6.a 2207 to 2483 1 to 278     Submitted on the opposite strand 278/298
(93 %)
8 diff
(97.4 %id)
FN056989 breast carcinoma ETV6.a 2225 to 2302 78 to 1     Submitted on the opposite strand 78/78
(100 %)
0 diff
(100 %id)
BM683130 eye, fetal eye ETV6.a 2247 to 2463 235 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 217/217
(100 %)
0 diff
(100 %id)
BG254285 adenocarcinoma, cell line, Prostate ETV6.a 2563 to 3129 1 to 573   tiling clone,   573/743
(77 %)
12 diff
(98.4 %id)
BM821279 stomach ETV6.a 2647 to 3057 1 to 410       410/410
(100 %)
1 diff
(99.8 %id)
BM829795 stomach ETV6.a 2647 to 3234 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
DB005366 breast, tumor tissue ETV6.a 2746 to 3171 2 to 427   capped   426/426
(100 %)
0 diff
(100 %id)
AA205762   ETV6.a 2770 to 3066 1 to 293       293/294
(99 %)
8 diff
(97.3 %id)
BF803155 colon_ins ETV6.a 2784 to 3074 13 to 301       289/301
(96 %)
6 diff
(98.1 %id)
BQ329902 lung_normal ETV6.a 3064 to 3399 334 to 1   AAA   334/334
(100 %)
18 diff
(94.7 %id)
BQ329903 lung_normal ETV6.a 3071 to 3405 338 to 4       335/338
(99 %)
0 diff
(100 %id)
AA452592   ETV6.a 3074 to 3348 1 to 275   tiling clone, Submitted on the opposite strand 275/275
(100 %)
1 diff
(99.7 %id)
AI274097 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 3075 to 3230 1 to 156     Submitted on the opposite strand 156/156
(100 %)
1 diff
(99.4 %id)
T91205 liver and spleen ETV6.a 3078 to 3426 1 to 350     Submitted on the opposite strand 350/350
(100 %)
13 diff
(96.3 %id)
AW195475 Kidney ETV6.a 3078 to 3579 1 to 503     Submitted on the opposite strand 503/503
(100 %)
3 diff
(99.5 %id)
BE844216 testis_normal ETV6.a 3130 to 3327 210 to 14       197/223
(88 %)
0 diff
(100 %id)
BG982917 colon_normal ETV6.a 3150 to 3352 1 to 203       203/223
(91 %)
9 diff
(96.0 %id)
CB962155 Blood vessels - aorta, basilar and artery ETV6.a 3212 to 3882 1 to 677   tiling clone,   677/748
(90 %)
8 diff
(99.0 %id)
BF858887 prostate_tumor ETV6.a 3235 to 3555 391 to 75     Submitted on the opposite strand 317/391
(81 %)
0 diff
(100 %id)
AW363261 colon ETV6.a 3326 to 3961 630 to 3       628/630
(99 %)
0 diff
(100 %id)
AW170339 cervix, tumor ETV6.a 3330 to 3850 1 to 521     Submitted on the opposite strand 521/521
(100 %)
4 diff
(99.3 %id)
GD141362   ETV6.a 3349 to 3614 271 to 6   AAA Submitted on the opposite strand 266/273
(97 %)
0 diff
(100 %id)
R24905 placenta ETV6.a 3482 to 3866 1 to 398       398/431
(92 %)
18 diff
(95.9 %id)
H63489 liver and spleen ETV6.a 3570 to 4095 1 to 526       526/575
(91 %)
24 diff
(95.9 %id)
H64955 liver and spleen ETV6.a 3571 to 4024 1 to 455       455/456
(99 %)
8 diff
(98.3 %id)
N31299 melanocyte ETV6.a 3590 to 3789 1 to 201       201/201
(100 %)
2 diff
(99.1 %id)
AV722693 hypothalamus ETV6.a 3628 to 4318 1 to 686   tiling clone,   686/687
(99 %)
10 diff
(98.6 %id)
AW388295 stomach ETV6.a 3664 to 3793 25 to 154       130/154
(84 %)
6 diff
(96.2 %id)
BM967146 Islets of Langerhans, Pancreas ETV6.a 3718 to 4281 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
BM967174 Islets of Langerhans, Pancreas ETV6.a 3718 to 4276 1 to 563       563/563
(100 %)
3 diff
(99.5 %id)
CK823446 Islets of Langerhans, Pancreas ETV6.a 3718 to 4311 1 to 599       599/599
(100 %)
6 diff
(99.0 %id)
BX113669 liver and spleen ETV6.a 3720 to 4243 528 to 1     Submitted on the opposite strand 528/528
(100 %)
3 diff
(99.5 %id)
AA504759 germinal center B cell ETV6.a 3750 to 4189 8 to 446       439/446
(98 %)
6 diff
(98.7 %id)
BF856548 prostate_tumor ETV6.a 3782 to 3953 1 to 177       177/177
(100 %)
11 diff
(93.8 %id)
BF857611 prostate_tumor ETV6.a 3782 to 3942 1 to 164       164/164
(100 %)
9 diff
(94.6 %id)
BF858811 prostate_tumor ETV6.a 3784 to 4203 1 to 420       420/420
(100 %)
15 diff
(96.5 %id)
AA721603 breast, normal ductal tissue ETV6.a 3787 to 4114 1 to 326       326/326
(100 %)
8 diff
(97.6 %id)
AW975566   ETV6.a 3792 to 4115 446 to 123     Submitted on the opposite strand 324/494
(65 %)
0 diff
(100 %id)
BF857615 prostate_tumor ETV6.a 3799 to 4000 1 to 193       193/194
(99 %)
12 diff
(93.9 %id)
T79706 liver and spleen ETV6.a 3802 to 4147 1 to 355       355/366
(96 %)
15 diff
(96.0 %id)
BF856552 prostate_tumor ETV6.a 3814 to 3997 12 to 189       178/189
(94 %)
6 diff
(96.9 %id)
CR741021   ETV6.a 3842 to 4136 302 to 7     Submitted on the opposite strand 296/307
(96 %)
0 diff
(100 %id)
T84954 liver and spleen ETV6.a 3909 to 4201 299 to 1     Submitted on the opposite strand 299/303
(98 %)
11 diff
(96.4 %id)
FN102082 breast carcinoma ETV6.a 3925 to 4010 84 to 1     Submitted on the opposite strand 84/84
(100 %)
2 diff
(97.7 %id)
BQ003277 Chondrosarcoma, Left Pelvis ETV6.a 3954 to 4608 671 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 655/655
(100 %)
0 diff
(100 %id)
AA452774.
matches multiple genes
  ETV6.a 3996 to 4130 154 to 20     Submitted on the opposite strand, also hits gene FIBIN 135/154
(87 %)
0 diff
(100 %id)
CK823445 Islets of Langerhans, Pancreas ETV6.a 4047 to 4568 527 to 2       526/527
(99 %)
0 diff
(100 %id)
AA370643 Prostate ETV6.a 4071 to 4387 1 to 323       323/330
(97 %)
6 diff
(98.2 %id)
AI769242 pooled ETV6.a 4081 to 4419 358 to 20   AAA   339/348
(97 %)
5 diff
(98.6 %id)
AW962779   ETV6.a 4087 to 4460 1 to 379       379/379
(100 %)
24 diff
(93.7 %id)
AI224851 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 4089 to 4573 489 to 1       489/489
(100 %)
8 diff
(98.4 %id)
AI660081 thymus, pooled ETV6.a 4096 to 4594 499 to 1       499/499
(100 %)
3 diff
(99.4 %id)
AI032051 liver and spleen ETV6.a 4164 to 4596 439 to 3       437/439
(99 %)
0 diff
(100 %id)
AW015010   ETV6.a 4172 to 4594 440 to 18   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 423/423
(100 %)
2 diff
(99.6 %id)
H98001 melanocyte ETV6.a 4180 to 4596 430 to 5       426/432
(98 %)
0 diff
(100 %id)
T79621 liver and spleen ETV6.a 4201 to 4596 411 to 4       408/468
(87 %)
0 diff
(100 %id)
H63431 liver and spleen ETV6.a 4201 to 4547 349 to 1       349/355
(98 %)
7 diff
(98.1 %id)
H64956 liver and spleen ETV6.a 4201 to 4548 352 to 1       352/399
(88 %)
11 diff
(97.3 %id)
AI568340 lymph node, lymphoma, follicular mixed small and largecell ETV6.a 4213 to 4568 355 to 2       354/355
(99 %)
0 diff
(100 %id)
AI343373 colon, colon tumor, RER+ ETV6.a 4214 to 4589 410 to 35   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 376/376
(100 %)
12 diff
(96.9 %id)
AA505095.
matches multiple genes
germinal center B cell ETV6.a 4230 to 4589 402 to 43   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base), also hits gene serspyby 360/360
(100 %)
3 diff
(99.2 %id)
AA830304 germinal center B cell ETV6.a 4230 to 4594 386 to 22   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 365/365
(100 %)
3 diff
(99.2 %id)
C05886   ETV6.a 4231 to 4729 491 to 1   tiling clone,   491/497
(98 %)
6 diff
(98.8 %id)
AI024026 liver and spleen ETV6.a 4247 to 4596 352 to 3       350/352
(99 %)
0 diff
(100 %id)
N22911 melanocyte ETV6.a 4325 to 4701 388 to 12       377/388
(97 %)
0 diff
(100 %id)
BC020284.
matches multiple genes
bladder, Bladder, transitional cell papilloma, transitional cell papilloma, cell line ETV6.a 4330 to 6113 1 to 1787   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base), also hits gene NEDD4 1787/1787
(100 %)
5 diff
(99.8 %id)
CN403893 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells ETV6.a 4679 to 5151 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
BM728587 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ETV6.a 4699 to 5144 203 to 646       444/646
(68 %)
6 diff
(99.1 %id)
DA646082 mammary gland ETV6.a 4743 to 5589 2 to 848   capped   847/847
(100 %)
7 diff
(99.2 %id)
AA310659   ETV6.a 4789 to 5263 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
BP431828   ETV6.a 4789 to 5171 1 to 383       383/383
(100 %)
4 diff
(99.0 %id)
AW953495   ETV6.a 4790 to 5489 1 to 702       702/702
(100 %)
7 diff
(99.1 %id)
BQ337094 marrow ETV6.a 4809 to 5437 20 to 645       626/671
(93 %)
7 diff
(99.0 %id)
BF890739 marrow ETV6.a 4824 to 5237 1 to 415       415/415
(100 %)
4 diff
(99.1 %id)
BU198159   ETV6.a 4844 to 5471 1 to 628       628/629
(99 %)
7 diff
(98.9 %id)
BF750794 breast_normal ETV6.a 4858 to 5339 1 to 482       482/483
(99 %)
26 diff
(94.7 %id)
CV379817 marrow ETV6.a 4895 to 5244 1 to 350       350/350
(100 %)
24 diff
(93.2 %id)
AV751735 Pituitary ETV6.a 4920 to 5580 1 to 658       658/681
(96 %)
15 diff
(97.8 %id)
R26929 placenta ETV6.a 4933 to 5265 1 to 340       340/360
(94 %)
10 diff
(97.3 %id)
BM541546 leiomyosarcoma, uterus ETV6.a 4937 to 5844 1 to 904       904/1098
(82 %)
17 diff
(98.5 %id)
H39509 breast ETV6.a 4943 to 5418 1 to 477       477/479
(99 %)
4 diff
(99.2 %id)
H43454 breast ETV6.a 4943 to 5365 1 to 430       430/445
(96 %)
15 diff
(96.7 %id)
H44834 breast ETV6.a 4944 to 5322 1 to 391       391/391
(100 %)
12 diff
(97.0 %id)
BF748931 breast_normal ETV6.a 4952 to 5096 145 to 1     Submitted on the opposite strand 145/150
(96 %)
1 diff
(99.4 %id)
BU630424 cell lines, Chondrosarcoma ETV6.a 5000 to 5714 733 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 715/715
(100 %)
0 diff
(100 %id)
Z44378 brain, total brain ETV6.a 5036 to 5395 1 to 360       360/360
(100 %)
0 diff
(100 %id)
BC061911 Duodenum, adenocarcinoma ETV6.a 5039 to 6127 1 to 1089   available from MGC, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 1089/1089
(100 %)
5 diff
(99.6 %id)
BF980782 duodenal adenocarcinoma, cell line, small intestine ETV6.a 5039 to 5738 1 to 701   available from MGC,   701/1028
(68 %)
16 diff
(98.5 %id)
AW383255 head_neck ETV6.a 5041 to 5556 17 to 532       516/532
(96 %)
18 diff
(96.7 %id)
BE154723 head_neck ETV6.a 5045 to 5556 1 to 510       510/510
(100 %)
7 diff
(98.7 %id)
BE154716 head_neck ETV6.a 5046 to 5556 1 to 510       510/510
(100 %)
5 diff
(99.1 %id)
BF350668 head_neck ETV6.a 5054 to 5561 514 to 8       507/514
(98 %)
0 diff
(100 %id)
T32581 gallbladder ETV6.a 5057 to 5339 1 to 283       283/286
(98 %)
3 diff
(99.0 %id)
CB994307 placenta, pre-eclamptic placenta ETV6.a 5065 to 5771 28 to 746       719/827
(86 %)
23 diff
(97.3 %id)
CB992442 placenta, pre-eclamptic placenta ETV6.a 5065 to 5829 28 to 801       774/813
(95 %)
19 diff
(97.7 %id)
CB993423 placenta, pre-eclamptic placenta ETV6.a 5065 to 5812 28 to 781       754/800
(94 %)
34 diff
(95.8 %id)
CB991896.
matches multiple genes
placenta, pre-eclamptic placenta ETV6.a 5065 to 5487 28 to 450     also hits gene VASH2 423/452
(93 %)
5 diff
(98.9 %id)
CB997564 placenta, pre-eclamptic placenta ETV6.a 5065 to 5700 28 to 669       642/865
(74 %)
18 diff
(98.0 %id)
CB991407 placenta, pre-eclamptic placenta ETV6.a 5065 to 5853 28 to 830       803/832
(96 %)
22 diff
(97.4 %id)
BU507161 leiomyosarcoma, uterus ETV6.a 5076 to 5993 1 to 920       920/920
(100 %)
7 diff
(99.3 %id)
AA132682 colon, tumor ETV6.a 5077 to 5513 1 to 437       437/438
(99 %)
3 diff
(99.4 %id)
BE568091 bladder, carcinoma, cell line ETV6.a 5088 to 5762 1 to 666       666/673
(98 %)
11 diff
(98.4 %id)
BE154656 head_neck ETV6.a 5103 to 5417 1 to 315       315/315
(100 %)
3 diff
(99.1 %id)
AA310270   ETV6.a 5212 to 5693 1 to 483       483/483
(100 %)
2 diff
(99.6 %id)
BY798812 eye ETV6.a 5227 to 5868 1 to 644       644/644
(100 %)
6 diff
(99.1 %id)
CN403894 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells ETV6.a 5254 to 5845 1 to 592       592/592
(100 %)
8 diff
(98.7 %id)
R05880 liver and spleen ETV6.a 5257 to 5595 1 to 346       346/426
(81 %)
11 diff
(97.5 %id)
BQ641702 eye, normal pigmented retinal epithelium ETV6.a 5330 to 6144 8 to 820   tiling clone,   813/935
(86 %)
17 diff
(98.2 %id)
CA310639 Human Lung Epithelial cells, lung ETV6.a 5331 to 6127 810 to 16   AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 795/795
(100 %)
6 diff
(99.3 %id)
TI_149302492   ETV6.a 5364 to 6232 933 to 76   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 858/979
(87 %)
18 diff
(98.2 %id)
BF747959 breast_normal ETV6.a 5368 to 5830 461 to 1     Submitted on the opposite strand 461/461
(100 %)
4 diff
(99.2 %id)
BM794339 Ascites, stomach ETV6.a 5386 to 6015 1 to 630       630/630
(100 %)
2 diff
(99.7 %id)
BM699498 eye, fetal eyes ETV6.a 5418 to 5855 1 to 439       439/439
(100 %)
3 diff
(99.4 %id)
TI_149290294   ETV6.a 5423 to 6255 876 to 40       837/876
(95 %)
0 diff
(100 %id)
AA311547 heart ETV6.a 5437 to 5719 1 to 284       284/284
(100 %)
2 diff
(99.3 %id)
TI_149290471   ETV6.a 5500 to 6254 840 to 91       750/893
(83 %)
0 diff
(100 %id)
BG951877 colon ETV6.a 5510 to 5720 10 to 221       212/221
(95 %)
6 diff
(97.3 %id)
CD368131 Alveolar Macrophage, lung ETV6.a 5547 to 6234 707 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 691/691
(100 %)
5 diff
(99.3 %id)
AI762695 B-cell, chronic lymphotic leukemia ETV6.a 5585 to 6125 543 to 2       542/543
(99 %)
0 diff
(100 %id)
BU681757 lung ETV6.a 5592 to 6234 659 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 643/643
(100 %)
0 diff
(100 %id)
CB156051 Liver ETV6.a 5595 to 6056 1 to 463       463/463
(100 %)
2 diff
(99.6 %id)
BU742269 eye, fetal eye ETV6.a 5601 to 6234 649 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 633/633
(100 %)
3 diff
(99.6 %id)
AA205732   ETV6.a 5602 to 6127 529 to 1       529/529
(100 %)
4 diff
(99.3 %id)
BE940512 uterus_tumor ETV6.a 5617 to 5913 302 to 6       297/302
(98 %)
0 diff
(100 %id)
BE940663 uterus_tumor ETV6.a 5617 to 5905 17 to 303       287/303
(94 %)
6 diff
(98.1 %id)
BM980675 lung, Primary Lung Cystic Fibrosis EpithelialCells ETV6.a 5623 to 6232 628 to 20   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 609/609
(100 %)
2 diff
(99.7 %id)
T94918 lung ETV6.a 5626 to 5985 1 to 370       370/373
(99 %)
16 diff
(95.8 %id)
AI598130 anaplastic oligodendroglioma, brain ETV6.a 5629 to 6127 499 to 1       499/499
(100 %)
0 diff
(100 %id)
AW516813 cervix, tumor ETV6.a 5649 to 6127 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
BE940609 uterus_tumor ETV6.a 5650 to 5905 1 to 256       256/256
(100 %)
3 diff
(98.9 %id)
DA999536 breast, tumor tissue ETV6.a 5651 to 6231 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
AI123905 heart ETV6.a 5653 to 6127 475 to 1       475/475
(100 %)
0 diff
(100 %id)
DB360716 mammary gland ETV6.a 5666 to 6234 569 to 1       569/574
(99 %)
6 diff
(99.0 %id)
N67183 cochlea, ear ETV6.a 5675 to 6127 457 to 1       457/457
(100 %)
4 diff
(99.2 %id)
AA132557 colon, tumor ETV6.a 5678 to 6127 450 to 1       450/451
(99 %)
0 diff
(100 %id)
AI140199 lung ETV6.a 5687 to 6133 450 to 4       447/450
(99 %)
0 diff
(100 %id)
BM973463 lung ETV6.a 5690 to 6247 563 to 6       558/563
(99 %)
0 diff
(100 %id)
R05794 liver and spleen ETV6.a 5702 to 6136 441 to 1       441/444
(99 %)
6 diff
(98.7 %id)
H53399 pineal gland ETV6.a 5724 to 6106 1 to 385       385/387
(99 %)
3 diff
(99.3 %id)
BU607628 Human Lung Epithelial cells, lung ETV6.a 5731 to 6134 415 to 12   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 404/413
(97 %)
0 diff
(100 %id)
AA928496 adenocarcinoma, colon ETV6.a 5747 to 6127 381 to 1       381/381
(100 %)
0 diff
(100 %id)
BF241262 bone marrow, from acute myelogenous leukemia ETV6.a 5747 to 6174 1 to 434       434/529
(82 %)
24 diff
(95.5 %id)
AI400044 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ETV6.a 5764 to 6127 364 to 1       364/364
(100 %)
0 diff
(100 %id)
AI435278 B-cell, chronic lymphotic leukemia ETV6.a 5764 to 6236 473 to 1       473/473
(100 %)
1 diff
(99.8 %id)
AI200299 lung ETV6.a 5765 to 6135 371 to 1       371/371
(100 %)
0 diff
(100 %id)
AI673408 colon, colonic mucosa from 5 ulcerative colitispatients ETV6.a 5800 to 6237 436 to 1       436/436
(100 %)
2 diff
(99.6 %id)
AW149083 Kidney, renal cell tumor ETV6.a 5810 to 6241 434 to 1       434/434
(100 %)
4 diff
(99.1 %id)
BU617795 cell lines, Chondrosarcoma ETV6.a 5811 to 6144 335 to 2       334/335
(99 %)
0 diff
(100 %id)
AI301558 carcinoid, lung ETV6.a 5812 to 6137 326 to 1       326/326
(100 %)
3 diff
(99.1 %id)
AI268890 adenocarcinoma, colon ETV6.a 5813 to 6128 316 to 1       316/316
(100 %)
0 diff
(100 %id)
H28028 breast ETV6.a 5828 to 6220 395 to 1       395/395
(100 %)
4 diff
(99.0 %id)
AW027091 thymus, pooled ETV6.a 5828 to 6234 407 to 1       407/407
(100 %)
0 diff
(100 %id)
BF913868 uterus_tumor ETV6.a 5837 to 6162 1 to 328       328/328
(100 %)
1 diff
(99.7 %id)
AI288094 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus ETV6.a 5837 to 6234 394 to 1       394/395
(99 %)
9 diff
(97.8 %id)
AI284792 ovary, tumor, 5 pooled (see description) ETV6.a 5839 to 6234 394 to 1       394/397
(99 %)
9 diff
(97.8 %id)
R26706 placenta ETV6.a 5848 to 6235 408 to 1       408/468
(87 %)
25 diff
(94.7 %id)
AI860259 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) ETV6.a 5850 to 6247 398 to 1   tiling clone,   398/398
(100 %)
4 diff
(99.0 %id)
BP395117 pancreatic islet ETV6.a 5867 to 6203 1 to 341     Submitted on the opposite strand 341/341
(100 %)
3 diff
(99.2 %id)
H42473 breast ETV6.a 5867 to 6224 365 to 1       365/366
(99 %)
6 diff
(98.4 %id)
CA313599 Human Lung Epithelial cells, lung ETV6.a 5873 to 6234 28 to 389   AAA Submitted on the opposite strand 362/389
(93 %)
6 diff
(98.5 %id)
D79095 placenta ETV6.a 5880 to 6128 1 to 249       249/249
(100 %)
0 diff
(100 %id)
AW182884 cervix, tumor ETV6.a 5905 to 6239 333 to 1       333/333
(100 %)
5 diff
(98.5 %id)
N67358 cochlea, ear ETV6.a 5908 to 6241 334 to 1       334/337
(99 %)
0 diff
(100 %id)
AI673002 thymus, pooled ETV6.a 5911 to 6234 350 to 27   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 324/324
(100 %)
5 diff
(98.5 %id)
N67347 cochlea, ear ETV6.a 5916 to 6241 326 to 1       326/326
(100 %)
0 diff
(100 %id)
Z40311 brain, total brain ETV6.a 5921 to 6234 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AA885913 Kidney ETV6.a 5924 to 6234 311 to 1       311/311
(100 %)
2 diff
(99.4 %id)
CB852461 Human Lung Epithelial cells, lung ETV6.a 5937 to 6116 209 to 29       181/218
(83 %)
0 diff
(100 %id)
GD158595   ETV6.a 5966 to 6127 1 to 163   AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 163/163
(100 %)
10 diff
(93.9 %id)
GD149796   ETV6.a 5971 to 6133 7 to 169       163/178
(91 %)
4 diff
(97.8 %id)
GD149800   ETV6.a 5971 to 6133 7 to 169       163/178
(91 %)
5 diff
(97.2 %id)
GD149801   ETV6.a 5971 to 6133 7 to 169       163/176
(92 %)
2 diff
(98.9 %id)
AI419684 brain, glioblastoma (pooled) ETV6.a 5974 to 6232 258 to 1       258/258
(100 %)
5 diff
(98.1 %id)
BQ029451 lung, Metastatic Chondrosarcoma ETV6.a 5985 to 6247 270 to 6       265/270
(98 %)
0 diff
(100 %id)
FN053301 breast carcinoma ETV6.a 5992 to 6117 1 to 126       126/126
(100 %)
2 diff
(98.5 %id)
AI678254 Kidney ETV6.a 6002 to 6226 231 to 9       223/231
(96 %)
0 diff
(100 %id)
BM854851 stomach ETV6.a 6053 to 6234 1 to 182   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 182/182
(100 %)
1 diff
(99.5 %id)
AI078659 parathyroid gland, parathyroid tumor ETV6.a 6093 to 6254 173 to 8       166/176
(94 %)
0 diff
(100 %id)
AI628893 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors ETV6.b 1 to 652 659 to 7 P10L E16K E17K A24X H25A ... tiling clone,   653/659
(99 %)
11 diff
(98.4 %id)
AI540115 B-cell, chronic lymphotic leukemia ETV6.b 148 to 652 507 to 3   tiling clone,   505/507
(99 %)
0 diff
(100 %id)
BX097078 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors ETV6.b 207 to 649 457 to 15   AAA   443/443
(100 %)
0 diff
(100 %id)
AI720676 colon ETV6.b 320 to 649 331 to 2       330/331
(99 %)
0 diff
(100 %id)
DA719230   ETV6.c 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
AI014620 pooled ETV6.c 215 to 630 443 to 28   tiling clone,   416/450
(92 %)
1 diff
(99.8 %id)
BX105902 pooled ETV6.d 1 to 461 1 to 461 exact tiling clone,   461/461
(100 %)
0 diff
(100 %id)
AI809966 pooled ETV6.d 118 to 733 619 to 4 exact tiling clone,   616/619
(99 %)
2 diff
(99.7 %id)
AA584562 pheochromocytoma ETV6.d 394 to 916 1 to 523   tiling clone, Submitted on the opposite strand 523/523
(100 %)
4 diff
(99.3 %id)
BX510050   ETV6.e-u 1 to 561 1 to 561 S74R V77I tiling clone,   561/561
(100 %)
2 diff
(99.7 %id)
DB335153 breast, tumor tissue ETV6.f-u 1 to 537 537 to 1 exact tiling clone,   537/537
(100 %)
0 diff
(100 %id)
BF436898 Prostate ETV6.g-u 1 to 427 426 to 1 R51E T52P V53* tiling clone,   426/426
(100 %)
3 diff
(99.3 %id)
AI913022 adenocarcinoma, Pancreas ETV6.g-u 13 to 415 404 to 1 T19H A20R E21R P22A L23P ...     404/404
(100 %)
3 diff
(99.3 %id)
AI889848 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus ETV6.g-u 66 to 427 363 to 1 A4G A6X A7V S11X L15X ... tiling clone,   363/363
(100 %)
6 diff
(98.4 %id)
BX106849 adenocarcinoma, Pancreas ETV6.g-u 86 to 427 343 to 1 A7X T19H A20R E21R P22A ...   Submitted on the opposite strand 343/343
(100 %)
3 diff
(99.2 %id)
AI867281 colon, colon tumor, RER+ ETV6.g-u 150 to 412 263 to 1 T19H A20R E21R P22A L23P ...     263/263
(100 %)
4 diff
(98.5 %id)
AK289441 bladder Gene ETV6, variant not shown         This clone was ignored    
DA041153 bladder Gene ETV6, variant not shown       capped This clone was ignored    
CN430256 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored    
AV695229 hepatocellular carcinoma Gene ETV6, variant not shown         This clone was ignored    
AV699314 hepatocellular carcinoma Gene ETV6, variant not shown         This clone was ignored    
AV683347.
matches multiple genes
hepatocellular carcinoma Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene skustor    
AV683347.
matches multiple genes
hepatocellular carcinoma Gene skustor, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene skustor    
AW402677 lymph Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored    
BY996560   Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored    
DB371554 ovary, tumor tissue Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored    
DA812228 ovary, tumor tissue Gene ETV6, variant not shown       capped Suspected internal deletion, this clone was ignored    
CR996356 T-Lymphocytes Gene ETV6, variant not shown         This clone was ignored    
TI_154139120   Gene ETV6, variant not shown         Suspected internal deletion, this clone was ignored    
DB222926 trachea Gene ETV6, variant not shown       capped This clone was ignored    
DB349516 trachea Gene ETV6, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI