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Gene B9D1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
117 supporting clones for gene B9D1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK297782   .a 1 to 878 1 to 878 H187Y tiling clone,   878/878
(100 %)
1 diff
(99.9 %id)
DC355944   .a 1 to 553 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC423204 uterus .a 26 to 574 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC423255 uterus .a 26 to 593 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
CA776537 Pancreas, Purified pancreatic islet .b 1 to 480 1 to 480   tiling clone, fully sequenced,   480/480
(100 %)
1 diff
(99.8 %id)
BM690839 eye, Retina Foveal and Macular .b 346 to 904 8 to 566       559/571
(97 %)
8 diff
(98.6 %id)
CA776227 Pancreas, Purified pancreatic islet .b 419 to 923 505 to 1   tiling clone, fully sequenced,   505/505
(100 %)
0 diff
(100 %id)
TI_151737118   .b 431 to 924 596 to 103   AAA   494/494
(100 %)
2 diff
(99.6 %id)
TI_57165887   .c 1 to 740 23 to 762 S2D L15F R16A E17K G18V ... tiling clone,   740/763
(96 %)
7 diff
(99.1 %id)
BI833202 pooled pancreas and spleen .c 8 to 740 1 to 733   tiling clone,   733/734
(99 %)
3 diff
(99.6 %id)
DB168250 kidney, tumor tissue .d 1 to 495 14 to 509   tiling clone, capped   496/508
(97 %)
6 diff
(98.9 %id)
TI_158431343   .d 301 to 873 671 to 100   tiling clone, AAA   572/847
(67 %)
15 diff
(98.3 %id)
BC002944 Skin, melanotic melanoma. .e 1 to 754 1 to 754 exact tiling clone, available from MGC, AAA   754/754
(100 %)
0 diff
(100 %id)
BF025740 melanotic melanoma, skin .e 20 to 752 1 to 730       732/860
(85 %)
18 diff
(98.0 %id)
TI_1948143367   .e 97 to 561 597 to 130       468/1394
(33 %)
10 diff
(99.3 %id)
CV026474 mixed .e 101 to 561 1 to 461       461/569
(81 %)
6 diff
(99.0 %id)
BF843789 head_neck .e 537 to 947 416 to 7     Submitted on the opposite strand 410/422
(97 %)
0 diff
(100 %id)
BI037376 nervous_tumor .e 559 to 990 12 to 442   tiling clone,   431/442
(97 %)
6 diff
(98.7 %id)
BM129815 Islets of Langerhans, Pancreas .f 1 to 529 2 to 530   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
CK819721 Islets of Langerhans, Pancreas .f 213 to 798 597 to 13   tiling clone, AAA   585/585
(100 %)
7 diff
(98.9 %id)
BM129507 Islets of Langerhans, Pancreas .f 214 to 798 597 to 13   AAA   585/585
(100 %)
2 diff
(99.7 %id)
CR606056 Placenta Cot 25-normalized .g 1 to 1322 1 to 1322 exact tiling clone,   1322/1322
(100 %)
0 diff
(100 %id)
BX358419 Placenta Cot 25-normalized .g 3 to 971 1 to 968 H39X W40C C41V G42W T43N ...     968/968
(100 %)
17 diff
(98.3 %id)
AW365160 head_neck .g 762 to 1033 5 to 275       271/275
(98 %)
7 diff
(97.5 %id)
T69629 Liver .h 1 to 309 1 to 310   tiling clone,   310/310
(100 %)
4 diff
(98.8 %id)
T69563 Liver .h 562 to 923 362 to 3   tiling clone,   360/378
(95 %)
5 diff
(98.7 %id)
AA335386 epididymis .h 576 to 920 8 to 352   tiling clone,   345/352
(98 %)
8 diff
(97.8 %id)
AW965536   .h 577 to 918 1 to 342       342/479
(71 %)
1 diff
(99.8 %id)
FN066078 breast carcinoma .h 588 to 706 119 to 1     Submitted on the opposite strand 119/119
(100 %)
0 diff
(100 %id)
NM_015681.3   .i 1 to 932 1 to 932 exact RefSeq,   932/932
(100 %)
4 diff
(99.6 %id)
AB030506   .i 14 to 923 8 to 919   tiling clone, AAA   912/919
(99 %)
10 diff
(99.0 %id)
BM782062 myeloma .i 16 to 618 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
BU930843 Prostate .i 21 to 401 1 to 387       387/704
(54 %)
8 diff
(98.9 %id)
DA101250 cerebellum .i 24 to 624 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DA741206   .i 25 to 587 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
CD627211   .i 29 to 408 16 to 396       381/422
(90 %)
8 diff
(98.2 %id)
CA389709 eye, RPE/choroid .i 30 to 389 1 to 362       362/362
(100 %)
3 diff
(99.2 %id)
BQ438211 melanotic melanoma, skin .i 35 to 897 5 to 878       874/896
(97 %)
35 diff
(96.1 %id)
BQ422055 large cell carcinoma, lung .i 38 to 813 1 to 781       781/863
(90 %)
15 diff
(98.3 %id)
BQ071811 brain, neuroblastoma, cell line .i 39 to 728 1 to 690       690/1142
(60 %)
3 diff
(99.8 %id)
TI_57175521   .i 39 to 690 271 to 965       549/965
(56 %)
22 diff
(97.8 %id)
BI831911 brain, medulla .i 40 to 690 1 to 694       548/694
(78 %)
26 diff
(96.3 %id)
BU171805 melanotic melanoma, skin .i 41 to 868 1 to 837       837/944
(88 %)
29 diff
(97.0 %id)
BX507706   .i 48 to 589 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
C18780 placenta .i 52 to 357 1 to 302       302/308
(98 %)
11 diff
(96.5 %id)
TI_149300870   .i 142 to 922 856 to 84   AAA   773/935
(82 %)
9 diff
(99.1 %id)
BI825552 brain, medulla .i 146 to 932 1 to 786       786/855
(91 %)
20 diff
(97.7 %id)
TI_57170612   .i 146 to 932 67 to 852       786/921
(85 %)
25 diff
(97.3 %id)
BQ437211 eye, retinoblastoma .i 147 to 908 1 to 766       766/960
(79 %)
12 diff
(98.8 %id)
AI525545 Prostate .i 149 to 772 14 to 628       615/711
(86 %)
22 diff
(97.0 %id)
CN479141 Human Lung Epithelial cells, lung .i 164 to 927 782 to 19   AAA   764/764
(100 %)
0 diff
(100 %id)
CN306143 embryonic stem cells, DMSO-treated H9 cellline .i 187 to 884 1 to 698       698/698
(100 %)
1 diff
(99.9 %id)
CD676260 eye, lens .i 189 to 811 1 to 623       623/623
(100 %)
0 diff
(100 %id)
TI_149296452   .i 218 to 922 784 to 80   AAA   705/955
(73 %)
0 diff
(100 %id)
BU684397 lung, Primary Lung Cystic Fibrosis EpithelialCells .i 218 to 922 721 to 17   AAA   705/720
(97 %)
0 diff
(100 %id)
BE745789 adenocarcinoma cell line, ovary .i 265 to 920 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
BM976857 lung, Primary Lung Cystic Fibrosis EpithelialCells .i 316 to 922 621 to 15   AAA   607/607
(100 %)
0 diff
(100 %id)
CA424618 cell lines, Chondrosarcoma .i 321 to 927 625 to 19   AAA   607/607
(100 %)
1 diff
(99.9 %id)
AA256667 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 334 to 685 1 to 351       351/351
(100 %)
1 diff
(99.8 %id)
TI_149308380   .i 334 to 922 684 to 96   AAA   589/995
(59 %)
9 diff
(99.1 %id)
BM979596 lung, Primary Lung Epithelial Cells .i 354 to 922 585 to 17   AAA   569/577
(98 %)
1 diff
(99.9 %id)
AI936091 normal prostate, Prostate .i 359 to 922 578 to 16   AAA   563/563
(100 %)
8 diff
(98.6 %id)
CD107270 brain, Pituitary .i 360 to 922 1 to 564   AAA   564/564
(100 %)
1 diff
(99.9 %id)
AW300551 Kidney .i 363 to 923 564 to 4       561/564
(99 %)
0 diff
(100 %id)
AI818169 normal prostate, Prostate .i 369 to 923 557 to 3       555/557
(99 %)
1 diff
(99.9 %id)
BE677745 pooled .i 372 to 918 557 to 11   AAA   547/547
(100 %)
7 diff
(98.8 %id)
AW276624 lung, two pooled squamous cell carcinomas .i 377 to 922 558 to 14   AAA   545/545
(100 %)
4 diff
(99.3 %id)
BM726709 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 439 to 915 1 to 477   fully sequenced,   477/477
(100 %)
1 diff
(99.8 %id)
AI079173 parathyroid gland, parathyroid tumor .i 441 to 923 487 to 6       482/487
(98 %)
4 diff
(99.2 %id)
TI_153989028   .i 441 to 922 583 to 102   AAA   482/482
(100 %)
9 diff
(98.2 %id)
AI129142 senescent fibroblast .i 445 to 922 480 to 12   AAA   469/544
(86 %)
17 diff
(96.9 %id)
T11912   .i 446 to 745 297 to 1       297/297
(100 %)
5 diff
(98.4 %id)
AA906546 pooled .i 450 to 922 504 to 33   AAA   472/472
(100 %)
11 diff
(97.7 %id)
AI347473 2 pooled tumors (clear cell type), Kidney .i 455 to 924 478 to 9       470/478
(98 %)
0 diff
(100 %id)
W44801 parathyroid gland, parathyroid tumor .i 485 to 923 442 to 6       437/442
(98 %)
1 diff
(99.8 %id)
AW080434 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .i 492 to 922 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AI050894 parathyroid gland, parathyroid tumor .i 502 to 922 418 to 1       418/418
(100 %)
7 diff
(98.4 %id)
AI204539   .i 511 to 923 417 to 4       414/421
(98 %)
5 diff
(98.9 %id)
AW205236   .i 517 to 922 423 to 18   AAA   406/406
(100 %)
4 diff
(99.1 %id)
CF528564 placenta .i 520 to 924 420 to 16   AAA   405/405
(100 %)
2 diff
(99.6 %id)
AI300844 2 pooled tumors (clear cell type), Kidney .i 522 to 928 411 to 5   tiling clone,   407/411
(99 %)
0 diff
(100 %id)
BM681492 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 538 to 922 400 to 17   fully sequenced, AAA   384/384
(100 %)
1 diff
(99.8 %id)
AA256668 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 767 to 922 156 to 1       156/156
(100 %)
0 diff
(100 %id)
CN306144 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 1 to 615 6 to 620 exact tiling clone,   620/620
(100 %)
2 diff
(99.7 %id)
AK293815 cerebellum .k 1 to 1346 2 to 1347 P167L tiling clone,   1347/1347
(100 %)
2 diff
(99.9 %id)
T11911   .k 41 to 263 1 to 223       223/223
(100 %)
11 diff
(95.1 %id)
DB249673 uterus .k 92 to 533 2 to 443   capped   442/442
(100 %)
0 diff
(100 %id)
DA417865 thalamus .k 136 to 701 2 to 568 P161S S162L L164S P166T S168I ... capped   567/567
(100 %)
2 diff
(99.7 %id)
CN306145 embryonic stem cells, cell lines H1, H7, andH9 .k 661 to 1272 1 to 612       612/612
(100 %)
0 diff
(100 %id)
AW294805   .k 730 to 1227 513 to 16   AAA   498/498
(100 %)
2 diff
(99.6 %id)
AA243762 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 755 to 1228 1 to 473   fully sequenced,   473/473
(100 %)
1 diff
(99.8 %id)
BX389589 Placenta Cot 25-normalized .k 764 to 1228 1 to 464       464/464
(100 %)
2 diff
(99.6 %id)
BX389590 Placenta Cot 25-normalized .k 764 to 1228 1 to 463       463/463
(100 %)
2 diff
(99.6 %id)
BX389591 Placenta Cot 25-normalized .k 764 to 1228 1 to 463       463/463
(100 %)
4 diff
(99.2 %id)
BU753424 placenta .k 982 to 1232 268 to 18   AAA   251/251
(100 %)
6 diff
(97.7 %id)
AA243643 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 1115 to 1229 114 to 1   fully sequenced,   114/114
(100 %)
0 diff
(100 %id)
DB067258 testis .l 1 to 533 2 to 534 exact tiling clone, capped   533/533
(100 %)
0 diff
(100 %id)
AK309320 tongue, tumor tissue .m 1 to 928 1 to 928 exact tiling clone,   928/928
(100 %)
1 diff
(99.9 %id)
FN065893 breast carcinoma .m 552 to 603 1 to 52       52/61
(85 %)
1 diff
(98.4 %id)
DA083196 cerebellum .n 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
CN398509 embryonic stem cells, cell lines H1, H7, andH9 .n 14 to 549 1 to 536 E140K     536/536
(100 %)
2 diff
(99.7 %id)
DA101323 cerebellum .n 258 to 813 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
AI871276 anaplastic oligodendroglioma, brain .o 1 to 597 598 to 1 L124F Q125T D126R L127S Q128A ... tiling clone,   598/598
(100 %)
3 diff
(99.5 %id)
AA432038   .p 1 to 381 6 to 381   tiling clone, fully sequenced,   376/381
(98 %)
10 diff
(97.4 %id)
TI_157604721   .p 255 to 733 569 to 89   tiling clone, AAA   481/845
(56 %)
17 diff
(98.0 %id)
AA431779   .p 320 to 734 419 to 5   tiling clone, fully sequenced,   415/419
(99 %)
1 diff
(99.8 %id)
BQ012937 placenta .p 320 to 733 432 to 19   AAA   414/414
(100 %)
0 diff
(100 %id)
CF529572 placenta .p 364 to 733 388 to 19   AAA   370/370
(100 %)
3 diff
(99.2 %id)
AI202480 Prostate .p 515 to 727 228 to 16   AAA   213/213
(100 %)
1 diff
(99.6 %id)
CD627206   .q 1 to 402 16 to 417 V127I S128M Q130V G131E P132V ... tiling clone,   402/422
(95 %)
17 diff
(96.0 %id)
CD627208   .q 1 to 402 40 to 441 V127I S128M Q130V G131E P132V ...     402/446
(90 %)
17 diff
(96.2 %id)
BF366666 nervous_tumor .r-u 1 to 300 1 to 300   tiling clone,   300/308
(97 %)
4 diff
(98.8 %id)
CD513347 brain, Pituitary .r-u 45 to 796 37 to 804 exact tiling clone,   768/979
(78 %)
25 diff
(97.5 %id)
AV683092 hepatocellular carcinoma .r-u 169 to 561 1 to 389 N69H H70Q Q71A A72L L73Q ...     389/393
(98 %)
3 diff
(99.3 %id)
AV699443 hepatocellular carcinoma .r-u 650 to 1417 766 to 1   tiling clone,   766/767
(99 %)
28 diff
(96.4 %id)
BI029739 marrow .r-u 728 to 1199 7 to 478   tiling clone,   472/478
(98 %)
6 diff
(98.8 %id)
BQ337493 marrow .r-u 746 to 1199 1 to 451   tiling clone,   451/451
(100 %)
6 diff
(98.7 %id)
BM787681 stomach .s 1 to 415 222 to 636 R3E tiling clone,   415/636
(65 %)
6 diff
(99.1 %id)
CD627207   Gene B9D1, variant not shown         This clone was ignored    
CD627209   Gene B9D1, variant not shown         This clone was ignored    
CD627210   Gene B9D1, variant not shown         This clone was ignored    
DC347747 tongue, tumor tissue Gene B9D1, variant not shown         Submitted on the opposite strand    
DC425997 tongue, tumor tissue Gene B9D1, variant not shown         Submitted on the opposite strand    
AW292166   Gene B9D1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB369080   Gene B9D1, variant not shown         This clone was ignored    
DA736570   Gene B9D1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r-u, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI