To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene C9orf47andS1PR3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
204 supporting clones for gene C9orf47andS1PR3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA804257 brain .a-u 1 to 469 2 to 470   tiling clone, capped   469/469
(100 %)
3 diff
(99.4 %id)
CD641731 pooled .a-u 137 to 814 1 to 676   tiling clone,   676/737
(91 %)
22 diff
(97.1 %id)
BM931110 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a-u 139 to 759 1 to 621   tiling clone, fully sequenced,   621/621
(100 %)
4 diff
(99.4 %id)
BP429387   .a-u 269 to 675 1 to 407   tiling clone,   407/407
(100 %)
3 diff
(99.3 %id)
BP428666   .a-u 270 to 671 1 to 402       402/402
(100 %)
2 diff
(99.6 %id)
BX492207   .a-u 307 to 476 1 to 170       170/170
(100 %)
2 diff
(98.9 %id)
AL536923 brain, fetal brain .a-u 378 to 1042 666 to 1       666/667
(99 %)
4 diff
(99.5 %id)
TI_2194695224   .a-u 388 to 1546 14 to 1162   tiling clone,   1149/1281
(89 %)
20 diff
(98.5 %id)
BM684576 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a-u 729 to 1054 327 to 1   fully sequenced,   327/327
(100 %)
4 diff
(98.8 %id)
TI_2194695223   .a-u 861 to 1941 1 to 1075       1075/1255
(85 %)
6 diff
(99.6 %id)
TI_2194694743   .a-u 864 to 1953 1152 to 63     Submitted on the opposite strand 1090/1241
(87 %)
0 diff
(100 %id)
TI_1971556105   .a-u 1005 to 1953 1083 to 143   tiling clone,   941/1280
(73 %)
0 diff
(100 %id)
AK130650 Spleen .a-u 1154 to 2597 1 to 1444   tiling clone, available from FLJ,   1444/1444
(100 %)
0 diff
(100 %id)
BM729144 eye, fetal eye .a-u 1218 to 1779 1 to 562     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 562/562
(100 %)
0 diff
(100 %id)
TI_2194695228   .a-u 1246 to 1954 13 to 721       709/1277
(55 %)
1 diff
(100.0 %id)
AL831887 brain .a-u 1258 to 3522 1 to 2265   tiling clone, available from DKFZ, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 2265/2280
(99 %)
4 diff
(99.9 %id)
BQ130749 insulinoma, Pancreas .a-u 2069 to 2558 1 to 490       490/490
(100 %)
5 diff
(99.0 %id)
CK905851 insulinoma, Pancreas .a-u 2116 to 2634 1 to 519       519/519
(100 %)
0 diff
(100 %id)
BM682071 eye, fetal eye .a-u 2822 to 3522 713 to 17   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 697/713
(97 %)
0 diff
(100 %id)
CK905850 insulinoma, Pancreas .a-u 2943 to 3522 594 to 16   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 579/594
(97 %)
0 diff
(100 %id)
BQ130496 insulinoma, Pancreas .a-u 2961 to 3522 576 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 561/576
(97 %)
0 diff
(100 %id)
AI865526 normal prostate, Prostate .a-u 3114 to 3522 409 to 1       409/416
(98 %)
3 diff
(99.3 %id)
AW452080   .a-u 3114 to 3522 424 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 409/436
(93 %)
0 diff
(100 %id)
BX090228 Prostate .a-u 3115 to 3522 1 to 408   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 408/421
(96 %)
1 diff
(99.8 %id)
AI201763 Prostate .a-u 3148 to 3521 374 to 1       374/374
(100 %)
6 diff
(98.4 %id)
AI424380 Prostate .a-u 3148 to 3522 376 to 2       375/376
(99 %)
0 diff
(100 %id)
AI918094 Prostate .a-u 3148 to 3522 375 to 1       375/375
(100 %)
1 diff
(99.8 %id)
BF475629 Prostate .a-u 3148 to 3522 375 to 1       375/375
(100 %)
0 diff
(100 %id)
BE856033 Prostate .a-u 3148 to 3522 375 to 1       375/375
(100 %)
0 diff
(100 %id)
BF221618 Prostate .a-u 3148 to 3522 375 to 1       375/375
(100 %)
0 diff
(100 %id)
AI680604 Prostate .a-u 3149 to 3522 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
BF222661 Prostate .a-u 3149 to 3522 372 to 1       372/372
(100 %)
5 diff
(98.7 %id)
AW137598   .a-u 3152 to 3522 386 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 371/386
(96 %)
0 diff
(100 %id)
AI658766 Prostate .a-u 3153 to 3522 370 to 1       370/370
(100 %)
0 diff
(100 %id)
BF222123 Prostate .a-u 3183 to 3522 343 to 4       340/343
(99 %)
0 diff
(100 %id)
AK130843 thymus .a-u 3460 to 5544 1 to 2085   tiling clone, available from FLJ,   2085/2085
(100 %)
2 diff
(100.0 %id)
T25325   .a-u 4741 to 4963 1 to 222       222/223
(99 %)
3 diff
(98.7 %id)
AL832194 human cervix .a-u 4793 to 12389 1 to 7596 exact tiling clone, available from DKFZ, AAA   7596/7596
(100 %)
6 diff
(100.0 %id)
BF908748 uterus_tumor .a-u 5120 to 5502 393 to 11     Submitted on the opposite strand 383/393
(97 %)
0 diff
(100 %id)
BM705261 eye, RPE and Choroid .a-u 7472 to 7929 1 to 458       458/458
(100 %)
0 diff
(100 %id)
BX471766   .a-u 7879 to 8428 1 to 547   tiling clone,   547/547
(100 %)
1 diff
(99.9 %id)
BM990167 lung, Metastatic Chondrosarcoma .a-u 11915 to 12532 637 to 19   tiling clone, AAA   619/619
(100 %)
1 diff
(99.9 %id)
AI888490 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a-u 11938 to 12389 486 to 34       453/486
(93 %)
0 diff
(100 %id)
AK129921 heart .a-u 12008 to 15623 1 to 3616   tiling clone, available from FLJ,   3616/3616
(100 %)
4 diff
(99.9 %id)
AW752560 colon .a-u 14036 to 14515 1 to 480       480/480
(100 %)
6 diff
(98.8 %id)
AW892465 nervous_normal .a-u 14256 to 14481 1 to 222       222/222
(100 %)
8 diff
(96.4 %id)
AW903104 nervous_normal .a-u 14256 to 14481 1 to 222       222/222
(100 %)
8 diff
(96.4 %id)
BE935631 nervous_normal .a-u 14256 to 14481 1 to 222       222/222
(100 %)
8 diff
(96.4 %id)
BQ337451 marrow .a-u 14509 to 14818 1 to 310   tiling clone,   310/414
(74 %)
7 diff
(98.4 %id)
DA722994   .b 1 to 521 2 to 522   tiling clone, capped   521/521
(100 %)
0 diff
(100 %id)
DA723002   .b 1 to 517 2 to 518   capped   517/517
(100 %)
0 diff
(100 %id)
DA707028   .b 27 to 597 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BP320942 placenta .b 30 to 630 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
DA226005 brain .b 32 to 571 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
CB959879 Human Placenta, placenta .b 32 to 749 22 to 752       731/846
(86 %)
26 diff
(97.0 %id)
CB988555 Human Placenta, placenta .b 32 to 782 22 to 773       752/773
(97 %)
10 diff
(98.8 %id)
CB989654 Human Placenta, placenta .b 32 to 784 22 to 776       755/776
(97 %)
13 diff
(98.4 %id)
DA217594 brain .b 35 to 539 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
AK312798 testis .b 36 to 1570 1 to 1535 exact     1535/1535
(100 %)
0 diff
(100 %id)
DB066725 testis .b 37 to 587 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BC060827 Placenta, normal .b 38 to 4242 1 to 4205 exact tiling clone, available from MGC, AAA   4205/4205
(100 %)
1 diff
(100.0 %id)
NM_005226.2   .b 38 to 4242 1 to 4205 exact RefSeq, AAA   4205/4205
(100 %)
0 diff
(100 %id)
DA807124 brain .b 38 to 592 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB218664 trachea .b 38 to 577 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB284823 uterus .b 38 to 581 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB212647 trachea .b 39 to 601 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA220583 brain .b 40 to 601 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA855806 placenta .b 40 to 364 2 to 326   capped   325/325
(100 %)
0 diff
(100 %id)
DA855862 placenta .b 40 to 616 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
BP278232   .b 42 to 624 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA093638 cerebellum .b 46 to 625 2 to 583   capped   582/582
(100 %)
3 diff
(99.5 %id)
DA721491   .b 47 to 593 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB135601 thymus .b 47 to 603 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB155798 thymus .b 47 to 624 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA406248 thalamus .b 58 to 539 2 to 483   capped   482/482
(100 %)
3 diff
(99.4 %id)
DA857679 placenta .b 60 to 600 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB148707 thymus .b 60 to 621 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB212598 trachea .b 60 to 625 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB221851 trachea .b 60 to 632 2 to 574   capped   573/577
(99 %)
1 diff
(99.9 %id)
DB235283 trachea .b 60 to 531 2 to 474   capped   473/473
(100 %)
3 diff
(99.4 %id)
DB275959 uterus .b 60 to 539 2 to 483   capped   482/482
(100 %)
3 diff
(99.4 %id)
DB279478 uterus .b 60 to 531 2 to 473   capped   472/472
(100 %)
0 diff
(100 %id)
DN996013 breast cancer, Mammary gland (cancer tissue) .b 66 to 470 1 to 405       405/405
(100 %)
5 diff
(98.8 %id)
DB000015 breast, tumor tissue .b 70 to 539 2 to 471   capped   470/470
(100 %)
0 diff
(100 %id)
CB045166 colon, juvenile granulosa tumor .b 95 to 728 36 to 669       634/670
(94 %)
8 diff
(98.9 %id)
CN343077 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 113 to 711 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
DA809813 brain .b 200 to 789 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA415285 thalamus .b 203 to 746 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BE500985 pooled germ cell tumors .b 350 to 652 301 to 1       301/301
(100 %)
1 diff
(99.7 %id)
DB229503 trachea .b 373 to 969 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB469956 hippocampus .b 411 to 870 1 to 475       475/475
(100 %)
46 diff
(90.4 %id)
DB483630 hippocampus .b 411 to 860 1 to 450       450/450
(100 %)
1 diff
(99.8 %id)
TI_1948209813   .b 428 to 1140 121 to 833   fully sequenced,   713/833
(85 %)
11 diff
(98.7 %id)
BC069579 PCR rescued clones .b 432 to 1570 1 to 1139 exact available from MGC,   1139/1139
(100 %)
2 diff
(99.9 %id)
CO957046 mixed .b 432 to 794 1 to 363       363/688
(52 %)
5 diff
(99.3 %id)
AF022139 brain .b 434 to 1567 1 to 1134       1134/1134
(100 %)
1 diff
(100.0 %id)
EL734095 mixed .b 434 to 1083 1 to 650       650/650
(100 %)
0 diff
(100 %id)
TI_1948209345   .b 434 to 1195 130 to 896       767/1182
(64 %)
9 diff
(99.3 %id)
TI_1948209657   .b 434 to 1178 127 to 874       748/1235
(60 %)
24 diff
(98.1 %id)
CX870941 embryonic stem .b 656 to 1468 1 to 813       813/813
(100 %)
0 diff
(100 %id)
CF147803 mixed .b 846 to 1570 730 to 6     Submitted on the opposite strand 725/731
(99 %)
0 diff
(100 %id)
DA989288 synovial membrane tissue from rheumatioidarthritis .b 889 to 1456 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
CO957061 mixed .b 914 to 1560 662 to 28       635/766
(82 %)
0 diff
(100 %id)
CX868026 embryonic stem .b 974 to 1656 1 to 683       683/683
(100 %)
1 diff
(99.9 %id)
BX481703   .b 977 to 1591 1 to 616       616/616
(100 %)
3 diff
(99.6 %id)
DA394663 thalamus .b 992 to 1572 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BQ292009 amnion_normal .b 1103 to 1425 328 to 5       324/328
(98 %)
0 diff
(100 %id)
TI_1948209814   .b 1110 to 1577 591 to 118   fully sequenced,   474/591
(80 %)
5 diff
(99.2 %id)
DA497305 brain .b 1318 to 1841 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
BG005362 placenta_normal .b 1372 to 1807 5 to 440       436/440
(99 %)
6 diff
(98.7 %id)
DB139822 thymus .b 1404 to 1893 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
BG005363 placenta_normal .b 1416 to 1817 1 to 404       404/407
(99 %)
14 diff
(96.6 %id)
CN343074 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1511 to 1690 1 to 180       180/180
(100 %)
0 diff
(100 %id)
AL703254 human skeletal muscle .b 1709 to 2311 1 to 603       603/603
(100 %)
1 diff
(99.9 %id)
AA375607 lung .b 1746 to 1895 1 to 150       150/150
(100 %)
0 diff
(100 %id)
DR763542 embryonic stem .b 1824 to 2654 1 to 831   tiling clone,   831/831
(100 %)
0 diff
(100 %id)
BE082615 breast .b 1923 to 2273 1 to 352       352/352
(100 %)
6 diff
(98.3 %id)
DB107275 thymus .b 2113 to 2690 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BG168627 hypernephroma, cell line, Kidney .b 2171 to 2664 1 to 515       515/1207
(42 %)
39 diff
(96.8 %id)
DA383239 thalamus .b 2188 to 2734 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
CV569577 cornea, eye .b 2232 to 2832 1 to 601       601/601
(100 %)
7 diff
(98.9 %id)
CN343075 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2305 to 3024 1 to 718       718/718
(100 %)
3 diff
(99.6 %id)
BE395422 endometrium, adenocarcinoma cell line, uterus .b 2344 to 2725 1 to 382       382/385
(99 %)
2 diff
(99.5 %id)
AI271657 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2390 to 2867 496 to 19   AAA   478/478
(100 %)
2 diff
(99.6 %id)
BF993744 placenta_normal .b 2406 to 2830 425 to 1       425/441
(96 %)
1 diff
(99.8 %id)
CN343073 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2423 to 3126 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
BY799115 eye .b 2445 to 3045 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
BF589582 Prostate .b 2452 to 2930 479 to 1       479/479
(100 %)
0 diff
(100 %id)
BE843370 testis_normal .b 2472 to 2871 20 to 425       406/425
(95 %)
6 diff
(98.6 %id)
BF432401 brain, glioblastoma (pooled) .b 2484 to 3050 567 to 1       567/567
(100 %)
0 diff
(100 %id)
AA524931   .b 2556 to 3031 496 to 22       475/498
(95 %)
0 diff
(100 %id)
BQ668511 epidermoid carcinoma, cell line, salivary gland .b 2588 to 3472 1 to 901       901/901
(100 %)
27 diff
(97.1 %id)
AI910290 breast .b 2661 to 2979 359 to 40       320/360
(88 %)
0 diff
(100 %id)
AI141395 brain, glioblastoma (pooled) .b 2715 to 3051 337 to 1       337/337
(100 %)
0 diff
(100 %id)
AL536342 brain, fetal brain .b 2762 to 3682 1 to 922       922/922
(100 %)
3 diff
(99.7 %id)
BX424439 brain, fetal brain .b 2762 to 3438 1 to 675       675/832
(81 %)
23 diff
(97.3 %id)
BG104796 adrenal cortex carcinoma, cell line, adrenal gland .b 2853 to 3583 1 to 729       729/804
(90 %)
12 diff
(98.6 %id)
DR760330 embryonic stem .b 2872 to 3702 1 to 831       831/831
(100 %)
6 diff
(99.3 %id)
AW582544 stomach .b 2963 to 3195 15 to 244       230/262
(87 %)
13 diff
(95.1 %id)
BE072703 breast .b 2968 to 3195 1 to 228       228/230
(99 %)
13 diff
(94.4 %id)
BE072909 breast .b 2969 to 3182 179 to 392       214/392
(54 %)
6 diff
(98.5 %id)
BE072698 breast .b 2987 to 3188 207 to 6     Submitted on the opposite strand 202/207
(97 %)
0 diff
(100 %id)
BG163912 hypernephroma, cell line, Kidney .b 3053 to 3804 1 to 745       745/927
(80 %)
31 diff
(96.7 %id)
BE072690 breast .b 3085 to 3188 109 to 6     Submitted on the opposite strand 104/109
(95 %)
0 diff
(100 %id)
AF121178 Liver .b 3218 to 3586 368 to 1       368/375
(98 %)
4 diff
(99.0 %id)
AI065043 Liver .b 3236 to 3670 1 to 434       434/434
(100 %)
4 diff
(99.1 %id)
AL536341 brain, fetal brain .b 3244 to 4218 975 to 1       975/975
(100 %)
14 diff
(98.6 %id)
W44359 senescent fibroblast .b 3312 to 3863 1 to 558       558/558
(100 %)
9 diff
(98.4 %id)
BX115131 senescent fibroblast .b 3313 to 4102 1 to 793       793/803
(98 %)
6 diff
(99.3 %id)
BU933776 mixed (pool of 40 RNAs) .b 3408 to 4227 1 to 837       837/841
(99 %)
49 diff
(94.2 %id)
BX380888 Placenta Cot 25-normalized .b 3413 to 4243 23 to 853       831/853
(97 %)
6 diff
(99.3 %id)
TI_154109161   .b 3439 to 4242 881 to 86   AAA   796/963
(82 %)
12 diff
(98.8 %id)
BP418774 small intestine .b 3483 to 3974 1 to 493     Submitted on the opposite strand 493/493
(100 %)
1 diff
(99.8 %id)
CA447674 Chondrosarcoma, Left Pelvis .b 3485 to 4242 772 to 19   AAA   754/754
(100 %)
7 diff
(99.1 %id)
W24825.
matches multiple genes
lung .b 3568 to 3802 1 to 235     This clone was ignored, also hits gene BPNT1 235/237
(99 %)
2 diff
(99.2 %id)
BX481704   .b 3577 to 4242 688 to 20   AAA   669/669
(100 %)
2 diff
(99.8 %id)
BM994343 lung, Metastatic Chondrosarcoma .b 3580 to 4242 681 to 19   AAA   663/663
(100 %)
0 diff
(100 %id)
C02466   .b 3583 to 3963 1 to 385       385/385
(100 %)
10 diff
(97.5 %id)
CN343076 embryonic stem cells, cell lines H1, H7, andH9 .b 3597 to 4241 26 to 669       644/669
(96 %)
6 diff
(99.2 %id)
CA427601 Bone, Subchondral Bone .b 3641 to 4236 614 to 19   AAA   596/596
(100 %)
0 diff
(100 %id)
AW970294   .b 3664 to 4241 579 to 1     Submitted on the opposite strand 579/685
(84 %)
2 diff
(99.8 %id)
BM997301 lung, Metastatic Chondrosarcoma .b 3670 to 4244 591 to 17   AAA   575/575
(100 %)
0 diff
(100 %id)
AW970373   .b 3672 to 4241 570 to 1     Submitted on the opposite strand 570/570
(100 %)
2 diff
(99.7 %id)
AA149845 uterus .b 3679 to 4243 1 to 563   fully sequenced,   563/563
(100 %)
2 diff
(99.7 %id)
AA424364 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3679 to 4159 1 to 481       481/481
(100 %)
0 diff
(100 %id)
AA534817 colon .b 3686 to 4242 557 to 1       557/557
(100 %)
1 diff
(99.9 %id)
DB369836   .b 3691 to 4201 512 to 1       512/520
(98 %)
1 diff
(99.9 %id)
CN343078 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3721 to 4242 1 to 522   AAA   522/522
(100 %)
2 diff
(99.7 %id)
AI921193 adenocarcinoma, Pancreas .b 3740 to 4243 505 to 2       504/505
(99 %)
0 diff
(100 %id)
R81036 placenta .b 3745 to 4148 1 to 417       417/418
(99 %)
18 diff
(95.7 %id)
CX867946 embryonic stem .b 3755 to 4242 519 to 32   AAA   488/488
(100 %)
6 diff
(98.8 %id)
DB552569 hippocampus .b 3774 to 4242 1 to 469     Submitted on the opposite strand 469/469
(100 %)
1 diff
(99.8 %id)
AI201627 heart .b 3776 to 4243 470 to 3       468/470
(99 %)
0 diff
(100 %id)
AI400436 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3794 to 4237 444 to 1       444/444
(100 %)
0 diff
(100 %id)
FN170917 breast carcinoma .b 3795 to 3872 1 to 78       78/78
(100 %)
3 diff
(96.2 %id)
DB537772 hippocampus .b 3815 to 4242 1 to 428     Submitted on the opposite strand 428/428
(100 %)
13 diff
(97.0 %id)
AA530943 normal prostatic epithelial cells, Prostate .b 3831 to 4116 286 to 1       286/287
(99 %)
1 diff
(99.7 %id)
AA234027 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3853 to 4226 1 to 374       374/374
(100 %)
0 diff
(100 %id)
AA729422 pooled germ cell tumors .b 3870 to 4242 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AA662564 Ewing's sarcoma .b 3872 to 4242 394 to 24   AAA   371/371
(100 %)
0 diff
(100 %id)
CB963906 Blood vessels - aorta, basilar and artery .b 3875 to 4242 1 to 368       368/369
(99 %)
3 diff
(99.2 %id)
W45712 senescent fibroblast .b 3880 to 4236 372 to 15   AAA   358/358
(100 %)
2 diff
(99.5 %id)
AW079308 colon, juvenile granulosa tumor .b 3883 to 4237 355 to 1       355/355
(100 %)
0 diff
(100 %id)
AA552180 normal prostatic epithelial cells, Prostate .b 3916 to 4239 324 to 1       324/331
(97 %)
1 diff
(99.7 %id)
AI758369 Kidney .b 3971 to 4242 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
AW028504 Kidney .b 4030 to 4236 226 to 20   AAA   207/207
(100 %)
1 diff
(99.6 %id)
DB343044 thymus .b 4038 to 4242 208 to 1       208/208
(100 %)
1 diff
(99.6 %id)
AA149800 uterus .b 4049 to 4244 199 to 1   fully sequenced,   199/199
(100 %)
1 diff
(99.5 %id)
AI473541 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4053 to 4242 190 to 1       190/190
(100 %)
0 diff
(100 %id)
FN055652 breast carcinoma .b 4055 to 4159 1 to 105       105/105
(100 %)
0 diff
(100 %id)
AI874145 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 4107 to 4242 136 to 1       136/136
(100 %)
0 diff
(100 %id)
BX390426.
matches multiple genes
placenta, Placenta Cot 25-normalized .b 4125 to 4242 1 to 116   AAA also hits gene TBC1D9BandC5orf45 116/116
(100 %)
8 diff
(93.2 %id)
NM_001001938.3   .c 1 to 4893 2 to 4894 exact RefSeq, AAA   4894/4894
(100 %)
0 diff
(100 %id)
AK127854 placenta .c 64 to 4893 1 to 4829   tiling clone, available from FLJ,   4829/4829
(100 %)
5 diff
(99.9 %id)
DA859327 placenta .c 65 to 530 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
AY333281   .c 133 to 741 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
DB328986 placenta .c 4373 to 4893 522 to 1       522/522
(100 %)
1 diff
(99.9 %id)
DA186207 amygdala .d 1 to 530 2 to 531   tiling clone, capped   530/530
(100 %)
0 diff
(100 %id)
DA403960 thalamus .d 15 to 559 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
AL536924 brain, fetal brain .d 64 to 1047 31 to 999 D158T P159H P160L F161S Q162N ... tiling clone,   969/1019
(95 %)
23 diff
(97.8 %id)
AK094842 caudate nucleus .e 1 to 2030 1 to 2029 N157Y tiling clone, available from FLJ,   2029/2029
(100 %)
5 diff
(99.8 %id)
NM_001142413.1   .e 1 to 4837 1 to 4837 exact RefSeq, AAA   4837/4837
(100 %)
0 diff
(100 %id)
DA255519 caudate nucleus .e 2 to 474 2 to 474   capped   473/473
(100 %)
0 diff
(100 %id)
TI_1971556109   .e 101 to 1240 1138 to 7 V2R R3I I4*     1132/1279
(88 %)
14 diff
(99.0 %id)
BC144432 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .e 110 to 3270 1 to 3159 exact tiling clone,   3159/3159
(100 %)
3 diff
(100.0 %id)
BC136895 Testicle, PCR rescued clones .e 111 to 3270 1 to 3158 exact tiling clone,   3158/3158
(100 %)
5 diff
(99.9 %id)
TI_1971556107   .e 111 to 746 644 to 9 exact     636/1293
(49 %)
0 diff
(100 %id)
TI_2194694745   .e 164 to 1200 61 to 1082     Submitted on the opposite strand 1022/1087
(94 %)
35 diff
(96.8 %id)
TI_1971556111   .e 549 to 1707 1154 to 6       1149/1306
(87 %)
0 diff
(100 %id)
BX452123 brain, fetal brain .e 616 to 1466 1 to 854       854/854
(100 %)
22 diff
(97.5 %id)
TI_2194695227   .e 701 to 1877 6 to 1165       1160/1272
(91 %)
6 diff
(99.6 %id)
TI_2194695225   .e 1067 to 2140 16 to 1085       1070/1293
(82 %)
23 diff
(98.3 %id)
DB306508 caudate nucleus .e 1498 to 2030 534 to 1       534/534
(100 %)
2 diff
(99.7 %id)
CN483726 eye Gene C9orf47andS1PR3, variant not shown         Suspected internal deletion, this clone was ignored    
DA211136 brain Gene C9orf47andS1PR3, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI