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Gene C2orf40TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
128 supporting clones for gene C2orf40 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_44166385   .a 1 to 791 82 to 871 P8L A9L V10S L11W A12P ...     790/1003
(78 %)
19 diff
(98.2 %id)
BC021742 Brain, hippocampus .a 5 to 782 1 to 778 exact tiling clone, available from MGC, AAA   778/778
(100 %)
4 diff
(99.5 %id)
BI546290 brain, hippocampus .a 5 to 791 1 to 786 P8L A9L V10S L11W A12P ...     786/808
(97 %)
18 diff
(97.8 %id)
AF325503   .a 9 to 786 1 to 769 exact tiling clone,   769/772
(99 %)
9 diff
(98.9 %id)
NM_032411.2   .a 9 to 782 1 to 774 exact RefSeq, AAA   774/774
(100 %)
0 diff
(100 %id)
BE670022 carcinoid, lung .a 17 to 637 1 to 621 Q82T F137X   Submitted on the opposite strand 621/621
(100 %)
6 diff
(99.1 %id)
AA551866 colon .a 18 to 389 1 to 372     Submitted on the opposite strand 372/372
(100 %)
6 diff
(98.4 %id)
AI478427 Kidney .a 18 to 537 1 to 520     Submitted on the opposite strand 520/520
(100 %)
0 diff
(100 %id)
AI864898 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 18 to 535 1 to 523     Submitted on the opposite strand 523/523
(100 %)
19 diff
(96.4 %id)
BG898249 cartilage .a 39 to 342 57 to 360       304/311
(97 %)
6 diff
(98.1 %id)
BG928262 cartilage .a 39 to 634 81 to 677 exact     597/604
(98 %)
6 diff
(99.1 %id)
BG897822 cartilage .a 41 to 357 75 to 393       319/325
(98 %)
6 diff
(98.2 %id)
BG897950 cartilage .a 41 to 387 75 to 422       348/354
(98 %)
6 diff
(98.4 %id)
BG925944 cartilage .a 41 to 678 76 to 714 exact     639/645
(99 %)
7 diff
(99.0 %id)
DB474360 hippocampus .a 47 to 538 1 to 492       492/492
(100 %)
0 diff
(100 %id)
AY358601   .a 48 to 789 1 to 742 exact     742/742
(100 %)
1 diff
(99.9 %id)
DR005518 Prostate .a 48 to 525 1 to 478       478/478
(100 %)
5 diff
(99.0 %id)
BQ722016 sympathetic trunk .a 49 to 609 1 to 571 K40Q K48N A95P K96N R109P ...     571/1038
(55 %)
68 diff
(93.5 %id)
BG897342 cartilage .a 50 to 439 39 to 428       390/428
(91 %)
12 diff
(97.2 %id)
BQ181838 Knee, Osteoarthritic Cartilage .a 50 to 782 750 to 19 A2G AAA   732/740
(98 %)
1 diff
(99.9 %id)
TI_154120172   .a 50 to 782 819 to 87 exact AAA   733/974
(75 %)
4 diff
(99.6 %id)
BG926583 cartilage .a 54 to 670 78 to 694 exact     617/623
(99 %)
7 diff
(98.9 %id)
CD672710 eye, Iris .a 63 to 709 1 to 647 exact     647/647
(100 %)
2 diff
(99.7 %id)
TI_154122544   .a 63 to 782 810 to 91 A2V A12P AAA   720/1012
(71 %)
7 diff
(99.4 %id)
BQ181263 Knee, Osteoarthritic Cartilage .a 70 to 788 730 to 13 P26X AAA   718/732
(98 %)
4 diff
(99.5 %id)
BP342032 stomach mucosa .a 73 to 655 1 to 582 exact     582/582
(100 %)
1 diff
(99.9 %id)
AA447168   .a 74 to 432 11 to 369   fully sequenced,   359/369
(97 %)
9 diff
(97.6 %id)
BG928916 cartilage .a 75 to 679 79 to 684 exact     606/616
(98 %)
6 diff
(99.1 %id)
BP196241 adrenal gland .a 78 to 657 1 to 581 exact     581/581
(100 %)
3 diff
(99.5 %id)
CN479717 Knee, Osteoarthritic Cartilage .a 82 to 782 720 to 19 exact AAA   702/702
(100 %)
3 diff
(99.6 %id)
BG900622 cartilage .a 103 to 405 90 to 392       303/326
(92 %)
6 diff
(98.2 %id)
BE219202 carcinoid, lung .a 108 to 606 1 to 499 Y114F G140V   Submitted on the opposite strand 499/499
(100 %)
4 diff
(99.2 %id)
BQ182570 Knee, Osteoarthritic Cartilage .a 110 to 788 691 to 13 K40X AAA   679/679
(100 %)
0 diff
(100 %id)
BQ182775 Knee, Osteoarthritic Cartilage .a 111 to 782 689 to 19 A2G P8H AAA   671/671
(100 %)
3 diff
(99.6 %id)
BG898371 cartilage .a 113 to 481 78 to 446       369/378
(97 %)
11 diff
(97.1 %id)
BG899076 cartilage .a 113 to 489 78 to 452       375/384
(97 %)
5 diff
(98.7 %id)
CV024503 mixed .a 117 to 566 1 to 450 exact     450/610
(73 %)
2 diff
(99.7 %id)
BE669539 carcinoid, lung .a 117 to 639 1 to 523 G27X W104R Y114F   Submitted on the opposite strand 523/523
(100 %)
4 diff
(99.3 %id)
BG898813 cartilage .a 124 to 649 40 to 565       526/565
(93 %)
6 diff
(99.0 %id)
BQ017139 lung, Metastatic Chondrosarcoma .a 126 to 782 675 to 19   AAA   657/657
(100 %)
0 diff
(100 %id)
CN479928 Knee, Osteoarthritic Cartilage .a 127 to 782 674 to 19   AAA   656/656
(100 %)
3 diff
(99.6 %id)
BG926499 cartilage .a 128 to 788 87 to 747   AAA   661/675
(97 %)
8 diff
(98.9 %id)
BQ181780 Knee, Osteoarthritic Cartilage .a 129 to 788 672 to 13   AAA   660/660
(100 %)
0 diff
(100 %id)
BQ183287 Knee, Osteoarthritic Cartilage .a 148 to 788 653 to 13   AAA   641/641
(100 %)
0 diff
(100 %id)
BG900223 cartilage .a 150 to 596 85 to 531       447/463
(96 %)
6 diff
(98.8 %id)
EL949490 eyeball .a 169 to 622 1 to 455       455/455
(100 %)
3 diff
(99.4 %id)
DV462020 cochlea, ear .a 182 to 366 1 to 185       185/185
(100 %)
1 diff
(99.5 %id)
AV722461 hypothalamus .a 198 to 644 7 to 444       438/444
(98 %)
11 diff
(97.6 %id)
BG926277 cartilage .a 199 to 533 85 to 419       335/351
(95 %)
6 diff
(98.3 %id)
CD676882 eye, Trabecular meshwork .a 209 to 783 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
BG926190 cartilage .a 218 to 788 76 to 644       569/585
(97 %)
7 diff
(98.9 %id)
BG926217 cartilage .a 218 to 597 78 to 455       378/398
(94 %)
13 diff
(96.8 %id)
BG926246 cartilage .a 218 to 572 77 to 429       353/360
(98 %)
9 diff
(97.5 %id)
AA443800   .a 375 to 785 411 to 1   fully sequenced,   411/411
(100 %)
0 diff
(100 %id)
BF940895 brain, oligodendroglioma .a 401 to 782 382 to 1       382/383
(99 %)
2 diff
(99.5 %id)
CD102575 Pooled-Skin .a 401 to 786 8 to 393   AAA   386/393
(98 %)
6 diff
(98.5 %id)
AI401806 Prostate .a 406 to 783 378 to 1       378/378
(100 %)
0 diff
(100 %id)
AA689224 normal prostate, Prostate .a 412 to 783 1 to 372   fully sequenced,   372/372
(100 %)
0 diff
(100 %id)
FN113158 breast carcinoma .a 419 to 490 71 to 1     Submitted on the opposite strand 71/71
(100 %)
1 diff
(98.6 %id)
AA992482   .a 420 to 788 380 to 13   AAA   368/368
(100 %)
3 diff
(99.2 %id)
BG898051 cartilage .a 437 to 758 89 to 410       322/345
(93 %)
5 diff
(98.6 %id)
BG925135 cartilage .a 450 to 792 84 to 425       342/366
(93 %)
2 diff
(99.5 %id)
BG896598 cartilage .a 471 to 788 426 to 109   AAA   318/318
(100 %)
1 diff
(99.7 %id)
BG928558 cartilage .a 473 to 782 78 to 387   AAA   310/316
(98 %)
0 diff
(100 %id)
N22257 cochlea, ear .a 478 to 782 305 to 1       305/409
(74 %)
4 diff
(99.1 %id)
AI927321 Kidney .a 484 to 782 316 to 18   AAA   299/299
(100 %)
4 diff
(98.7 %id)
AI620437 Prostate .a 487 to 788 302 to 1       302/302
(100 %)
0 diff
(100 %id)
BG925120 cartilage .a 490 to 782 104 to 397   AAA   294/311
(94 %)
0 diff
(100 %id)
AI446209 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 492 to 782 314 to 24   AAA   291/291
(100 %)
0 diff
(100 %id)
AI984927 Kidney .a 498 to 750 253 to 1       253/253
(100 %)
0 diff
(100 %id)
F37508 pectoral muscle (after mastectomy) .a 514 to 739 1 to 226       226/226
(100 %)
0 diff
(100 %id)
AW294454   .a 519 to 788 287 to 18   AAA   270/270
(100 %)
1 diff
(99.7 %id)
BG898258 cartilage .a 530 to 788 79 to 337   AAA   259/269
(96 %)
6 diff
(97.8 %id)
AI419611 brain, glioblastoma (pooled) .a 555 to 782 228 to 1       228/228
(100 %)
0 diff
(100 %id)
AA689501 normal prostate, Prostate .a 582 to 788 207 to 1   fully sequenced,   207/207
(100 %)
0 diff
(100 %id)
DV460099 cochlea, ear .a 585 to 782 224 to 27   AAA Submitted on the opposite strand 198/198
(100 %)
1 diff
(99.5 %id)
DV459007 cochlea, ear .a 585 to 792 1 to 208       208/231
(90 %)
3 diff
(98.8 %id)
BX280392 brain, hippocampus .a 592 to 788 225 to 29   AAA Submitted on the opposite strand 197/197
(100 %)
0 diff
(100 %id)
AI811018 Prostate .a 656 to 788 133 to 1       133/133
(100 %)
0 diff
(100 %id)
U77056   .a 683 to 788 1 to 106       106/106
(100 %)
0 diff
(100 %id)
BG928005 cartilage .b 1 to 602 60 to 660 F139L R140G H141M G142E tiling clone,   601/660
(91 %)
8 diff
(98.8 %id)
BM717909 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1 to 607 1 to 608 H102Q Y103L D104* tiling clone, AAA   608/608
(100 %)
1 diff
(99.9 %id)
BI561114 testis .d -11 to 761 1 to 772 exact tiling clone,   772/805
(95 %)
11 diff
(98.7 %id)
TI_44348792   .d 1 to 761 101 to 860 exact     767/948
(80 %)
12 diff
(98.8 %id)
BU852336 testis .d 1 to 712 3 to 720 exact tiling clone,   720/824
(87 %)
15 diff
(98.2 %id)
DB045657 testis .d 1 to 550 2 to 551 exact capped   550/550
(100 %)
0 diff
(100 %id)
BI825649 brain, medulla .e 1 to 330 1 to 329   tiling clone,   329/329
(100 %)
2 diff
(99.4 %id)
BI825554 brain, medulla .e 1 to 330 1 to 341   tiling clone,   341/341
(100 %)
23 diff
(93.3 %id)
TI_57170614   .e 2 to 800 67 to 885   tiling clone,   778/922
(84 %)
46 diff
(95.1 %id)
TI_57170711   .e 2 to 795 66 to 860 E43R V44C Q45S Q46S W47G ... tiling clone,   795/862
(92 %)
14 diff
(98.4 %id)
CA418648 Chondrosarcoma Grade II, Left Pelvis .f 1 to 690 706 to 19 exact tiling clone, AAA   688/707
(97 %)
4 diff
(99.5 %id)
AW195795 Kidney .f 174 to 684 511 to 1       511/511
(100 %)
3 diff
(99.5 %id)
H46846 brain .f 184 to 562 388 to 5     Submitted on the opposite strand 384/391
(98 %)
6 diff
(98.5 %id)
BU607973 Human Lung Epithelial cells, lung .f 195 to 690 508 to 13   AAA   496/505
(98 %)
1 diff
(99.9 %id)
CA311172 Human Lung Epithelial cells, lung .f 195 to 690 508 to 13   AAA   496/505
(98 %)
1 diff
(99.9 %id)
CK299740 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 205 to 684 498 to 19   AAA   480/488
(98 %)
0 diff
(100 %id)
TI_151811835   .f 205 to 684 69 to 548   fully sequenced, AAA   480/480
(100 %)
7 diff
(98.6 %id)
DB543179 hippocampus .f 209 to 690 1 to 482     Submitted on the opposite strand 482/482
(100 %)
0 diff
(100 %id)
BM932289 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 210 to 684 1 to 475   fully sequenced, AAA   475/475
(100 %)
2 diff
(99.6 %id)
BG926321 cartilage .f 212 to 575 86 to 449       364/392
(92 %)
14 diff
(96.5 %id)
BG926363 cartilage .f 212 to 599 86 to 473       388/405
(95 %)
13 diff
(96.8 %id)
AW271502 Kidney .f 212 to 684 473 to 1       473/473
(100 %)
0 diff
(100 %id)
AI480082 Kidney .f 225 to 688 464 to 1       464/464
(100 %)
0 diff
(100 %id)
AI636068 Kidney .f 227 to 684 471 to 14   AAA   458/458
(100 %)
0 diff
(100 %id)
AI422974 brain, glioblastoma (pooled) .f 229 to 684 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AI671498 pooled germ cell tumors .f 229 to 690 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AA036631 uterus .f 238 to 660 21 to 444   fully sequenced,   424/444
(95 %)
8 diff
(98.2 %id)
DB511282 testis .f 241 to 690 1 to 449     Submitted on the opposite strand 449/449
(100 %)
5 diff
(98.9 %id)
AI634047 pooled germ cell tumors .f 244 to 674 441 to 11       431/441
(97 %)
1 diff
(99.8 %id)
AI653386 pooled germ cell tumors .f 244 to 690 447 to 1       447/447
(100 %)
9 diff
(98.0 %id)
AI910697 Kidney .f 246 to 688 441 to 1       441/441
(100 %)
3 diff
(99.4 %id)
AW300399 Kidney .f 247 to 684 455 to 18   AAA   438/438
(100 %)
2 diff
(99.6 %id)
TI_151731970   .f 250 to 684 514 to 80   fully sequenced, AAA   435/435
(100 %)
0 diff
(100 %id)
BG900552 cartilage .f 264 to 599 78 to 414       337/346
(97 %)
8 diff
(97.7 %id)
DB509629 testis .f 265 to 690 1 to 427     Submitted on the opposite strand 427/427
(100 %)
1 diff
(99.8 %id)
DV459658 cochlea, ear .f 269 to 492 1 to 224       224/228
(98 %)
17 diff
(92.6 %id)
DV462649 cochlea, ear .f 269 to 488 230 to 11     Submitted on the opposite strand 220/230
(95 %)
0 diff
(100 %id)
DV461610 cochlea, ear .f 269 to 486 218 to 1     Submitted on the opposite strand 218/218
(100 %)
1 diff
(99.6 %id)
DV461902 cochlea, ear .f 270 to 491 228 to 7     Submitted on the opposite strand 222/229
(96 %)
0 diff
(100 %id)
AA057347 uterus .f 274 to 690 418 to 1   fully sequenced,   418/418
(100 %)
3 diff
(99.3 %id)
AI185817 lung .f 274 to 690 417 to 1       417/417
(100 %)
0 diff
(100 %id)
BF940306 Kidney .f 275 to 687 414 to 1       414/414
(100 %)
2 diff
(99.6 %id)
DB526071 testis .f 276 to 690 1 to 415     Submitted on the opposite strand 415/415
(100 %)
0 diff
(100 %id)
AI208884   .f 288 to 687 400 to 1       400/400
(100 %)
0 diff
(100 %id)
BG926743 cartilage .f 295 to 684 86 to 475   AAA   390/407
(95 %)
0 diff
(100 %id)
CD512815 brain, Pituitary .f 298 to 690 1 to 393   AAA   393/393
(100 %)
0 diff
(100 %id)
BP346080 synovial membrane .f 300 to 690 1 to 391   AAA   391/391
(100 %)
0 diff
(100 %id)
BM683905 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 479 to 684 224 to 19   fully sequenced, AAA   206/206
(100 %)
0 diff
(100 %id)
DB446193 testis .g 1 to 390 2 to 391       391/393
(99 %)
20 diff
(95.0 %id)
DB460670 testis .g 1 to 485 2 to 486 exact tiling clone,   486/486
(100 %)
0 diff
(100 %id)
DB087320 testis .h 1 to 558 2 to 559 exact tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DB444701 testis .i 1 to 438 1 to 437 N33I P34H L36C L37C I39* tiling clone,   437/437
(100 %)
1 diff
(99.8 %id)
AI018454   .j 1 to 429 429 to 2 exact tiling clone,   428/429
(99 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC