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Gene UTP20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene UTP20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX957203   .a 1 to 554 1 to 554   tiling clone,   554/554
(100 %)
1 diff
(99.9 %id)
NM_014503.2   .a 20 to 9029 1 to 9010 exact RefSeq, AAA   9010/9010
(100 %)
0 diff
(100 %id)
BP365460 lung .a 20 to 603 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA429166 colon .a 21 to 479 2 to 461   capped   460/460
(100 %)
3 diff
(99.4 %id)
AJ006778   .a 32 to 9025 1 to 8988 A1505P L1882Q tiling clone, AAA   8988/8988
(100 %)
11 diff
(99.9 %id)
CB139198 Liver .a 50 to 506 1 to 457       457/457
(100 %)
0 diff
(100 %id)
AA534559 colon .a 55 to 262 231 to 24       208/231
(90 %)
4 diff
(98.3 %id)
BF988270 placenta_normal .a 196 to 604 1 to 406       406/406
(100 %)
5 diff
(98.8 %id)
DB228777 trachea .a 2737 to 3311 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
CX869868 embryonic stem .a 2745 to 3434 1 to 689       689/689
(100 %)
1 diff
(99.9 %id)
DA505598 brain .a 2995 to 3552 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AW811984 stomach .a 3490 to 3618 129 to 1       129/129
(100 %)
2 diff
(98.5 %id)
AW811994 stomach .a 3490 to 3618 129 to 1       129/129
(100 %)
2 diff
(98.5 %id)
DA314180 hippocampus .a 3608 to 4165 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CN299532 embryonic stem cells, DMSO-treated H9 cellline .a 4109 to 4333 1 to 225       225/225
(100 %)
0 diff
(100 %id)
AW812669 stomach .a 4282 to 4851 584 to 16       569/666
(85 %)
9 diff
(98.7 %id)
AW812617 stomach .a 4284 to 4831 549 to 1       549/552
(99 %)
15 diff
(97.3 %id)
AW812684 stomach .a 4299 to 4786 570 to 73       505/570
(88 %)
18 diff
(96.9 %id)
BX485493   .a 4346 to 5031 1 to 686       686/686
(100 %)
2 diff
(99.8 %id)
AL521651 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 4415 to 5327 1 to 913       913/913
(100 %)
4 diff
(99.6 %id)
DA325546 hippocampus .a 4555 to 5143 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
AA085514   .a 4656 to 5090 1 to 435   tiling clone,   435/435
(100 %)
0 diff
(100 %id)
DA935547 Spleen .a 4818 to 5418 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
BX502181 Liver .a 5031 to 5626 1 to 596       596/596
(100 %)
2 diff
(99.7 %id)
DA398144 thalamus .a 5075 to 5636 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB278664 uterus .a 5103 to 5627 2 to 524   capped   523/525
(99 %)
5 diff
(99.1 %id)
TI_154103233   .a 5396 to 6304 966 to 69   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 898/1098
(81 %)
16 diff
(98.6 %id)
CK724909 Chondrosarcoma, Left Pubic Bone .a 5566 to 6304 737 to 1       737/737
(100 %)
2 diff
(99.8 %id)
AW296934   .a 5567 to 6003 18 to 454     Submitted on the opposite strand 437/437
(100 %)
3 diff
(99.4 %id)
AA744082 Prostate, stroma .a 5584 to 5833 275 to 26       250/282
(88 %)
0 diff
(100 %id)
AA745367 Prostate, stroma .a 5584 to 5833 275 to 26       250/282
(88 %)
0 diff
(100 %id)
CN299531 embryonic stem cells, cell lines H1, H7, andH9 .a 5622 to 6354 1 to 733       733/733
(100 %)
3 diff
(99.6 %id)
DA758521   .a 5670 to 6246 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
BP326733 prostata .a 5721 to 6299 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
DA390315 thalamus .a 5753 to 6335 2 to 585   capped   584/584
(100 %)
5 diff
(99.2 %id)
AF072718   .a 5821 to 8658 1 to 2838   tiling clone,   2838/2838
(100 %)
1 diff
(100.0 %id)
BE709213 head_neck .a 6056 to 6402 16 to 361       346/366
(94 %)
7 diff
(98.1 %id)
DR155643 human embryonic stem cells differentiated toan early endodermal cell type .a 6132 to 6907 16 to 791       776/791
(98 %)
6 diff
(99.3 %id)
BG117279 adenocarcinoma, cell line, Liver .a 6133 to 6877 1 to 743       743/979
(75 %)
28 diff
(97.2 %id)
AW815438 stomach .a 6187 to 6424 247 to 11       237/251
(94 %)
6 diff
(97.7 %id)
BQ938545 epidermoid carcinoma, cell line, lung .a 6212 to 7143 1 to 934       934/935
(99 %)
7 diff
(99.3 %id)
AK000333   .a 6237 to 9025 1 to 2789   available from FLJ, AAA   2789/2789
(100 %)
4 diff
(99.9 %id)
BM561731 blood, natural killer cells, cell line .a 6262 to 7129 1 to 865       865/1024
(84 %)
19 diff
(98.2 %id)
CN299530 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6327 to 7072 1 to 746       746/746
(100 %)
2 diff
(99.8 %id)
BP346218 synovial membrane .a 6449 to 7027 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BE796761 lung, small cell carcinoma .a 6473 to 7212 1 to 738       738/740
(99 %)
5 diff
(99.4 %id)
BE548858 cervical carcinoma cell line, cervix .a 6531 to 7236 1 to 699       699/701
(99 %)
17 diff
(97.6 %id)
BF935998 nervous_tumor .a 6661 to 7135 17 to 491       475/491
(96 %)
7 diff
(98.6 %id)
CX165586 human embryonic stem cells differentiated toan early endodermal cell type .a 6710 to 7550 1 to 841       841/841
(100 %)
0 diff
(100 %id)
BF794627 lymph, lymphoma, cell line .a 6751 to 7362 1 to 612       612/612
(100 %)
5 diff
(99.2 %id)
DA510416 brain .a 6773 to 7346 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AK297739   .a 6819 to 8709 1 to 1893       1893/1893
(100 %)
3 diff
(99.9 %id)
DC355223   .a 6819 to 7388 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
BF037836 adenocarcinoma, ovary .a 6929 to 7669 1 to 736       736/1008
(73 %)
36 diff
(96.5 %id)
BF812622 colon_ins .a 7105 to 7521 1 to 417       417/417
(100 %)
8 diff
(98.1 %id)
CN335273 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 7213 to 7846 1 to 634       634/634
(100 %)
1 diff
(99.9 %id)
AW601190 breast .a 7249 to 7425 188 to 12       177/188
(94 %)
0 diff
(100 %id)
AA197333   .a 7287 to 7688 1 to 402     Submitted on the opposite strand 402/403
(99 %)
2 diff
(99.6 %id)
BE779441 eye, retinoblastoma .a 7289 to 7976 1 to 683       683/818
(83 %)
23 diff
(97.2 %id)
CX786506 human embryonic stem cells .a 7299 to 8034 1 to 736       736/736
(100 %)
0 diff
(100 %id)
CD251476 brain, Pituitary .a 7323 to 8214 1 to 895       895/895
(100 %)
5 diff
(99.5 %id)
BQ229883 melanotic melanoma, skin .a 7411 to 8218 35 to 853       819/900
(91 %)
36 diff
(96.0 %id)
BE875691 large cell carcinoma, undifferentiated, lung .a 7478 to 8148 1 to 667       667/668
(99 %)
5 diff
(99.3 %id)
Z19486 leg muscle, skeletal muscle .a 7518 to 7758 1 to 242       242/338
(71 %)
5 diff
(98.6 %id)
BQ068959 brain, neuroblastoma, cell line .a 7529 to 8295 27 to 799   AAA   773/962
(80 %)
19 diff
(98.1 %id)
BQ068937 brain, neuroblastoma, cell line .a 7531 to 8379 1 to 852       852/962
(88 %)
19 diff
(98.1 %id)
BM792526 Ascites, stomach .a 7537 to 7789 1 to 254       254/254
(100 %)
18 diff
(93.0 %id)
CR616735 Placenta Cot 25-normalized .a 7601 to 9013 1 to 1413   tiling clone,   1413/1413
(100 %)
0 diff
(100 %id)
AL545314 placenta, Placenta Cot 25-normalized .a 7601 to 8262 1 to 662   fully sequenced,   662/662
(100 %)
0 diff
(100 %id)
BE926620 breast .a 7719 to 8009 1 to 289       289/302
(95 %)
3 diff
(99.1 %id)
BE926643 breast .a 7719 to 8007 292 to 2       291/292
(99 %)
0 diff
(100 %id)
BF082574 breast .a 7719 to 8008 292 to 4       289/292
(98 %)
0 diff
(100 %id)
BF082570 breast .a 7731 to 8001 1 to 270       270/271
(99 %)
4 diff
(98.6 %id)
BG696419 skin .a 7808 to 8674 1 to 860       862/867
(99 %)
16 diff
(98.2 %id)
BE258647 eye, retinoblastoma .a 7828 to 8456 66 to 688       623/688
(90 %)
14 diff
(98.0 %id)
AA358888 lung .a 7842 to 8178 1 to 338       338/342
(98 %)
5 diff
(98.6 %id)
AA359140 lung .a 7842 to 8161 1 to 323       323/323
(100 %)
4 diff
(98.8 %id)
AW955305   .a 7843 to 8512 1 to 671       671/671
(100 %)
8 diff
(98.9 %id)
BG273011 nasopharynx, normal epithelium .a 7850 to 8374 1 to 525       525/525
(100 %)
3 diff
(99.5 %id)
BM561111 eye, retinoblastoma .a 7864 to 8813 1 to 951       951/1053
(90 %)
27 diff
(97.5 %id)
BQ876564 sympathetic trunk .a 7864 to 8630 1 to 778       778/923
(84 %)
22 diff
(97.7 %id)
BI088690 cervix .a 7886 to 8578 1 to 700       700/700
(100 %)
11 diff
(98.5 %id)
BI088230 cervix .a 7887 to 8611 1 to 725       725/727
(99 %)
9 diff
(98.8 %id)
BM793235 Ascites, stomach .a 7920 to 8366 1 to 447       447/447
(100 %)
1 diff
(99.8 %id)
AA953098 Kidney, kidney tumor .a 7930 to 8403 473 to 1       473/473
(100 %)
2 diff
(99.6 %id)
CB163774 Liver .a 7956 to 8513 1 to 558       558/558
(100 %)
0 diff
(100 %id)
AW389210 stomach .a 7957 to 8254 1 to 298       298/298
(100 %)
2 diff
(99.4 %id)
BG940376 blood .a 8001 to 8311 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
BG940375 blood .a 8007 to 8439 429 to 1     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 429/429
(100 %)
15 diff
(96.6 %id)
AI292041 placenta .a 8037 to 8445 409 to 1       409/409
(100 %)
1 diff
(99.8 %id)
BU677538 lung, Primary Lung Epithelial Cells .a 8045 to 8422 378 to 1       378/410
(92 %)
8 diff
(98.1 %id)
AL521650 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 8048 to 8958 955 to 43       913/955
(95 %)
3 diff
(99.7 %id)
BU589746 mixed (pool of 40 RNAs) .a 8110 to 8453 1 to 344       344/369
(93 %)
7 diff
(98.2 %id)
BM023439 Islets of Langerhans, Pancreas .a 8173 to 8664 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
AL545458 placenta, Placenta Cot 25-normalized .a 8201 to 9013 812 to 1   fully sequenced,   812/812
(100 %)
9 diff
(98.9 %id)
BM505033 Pancreas, Purified pancreatic islet .a 8210 to 8644 11 to 445       435/445
(97 %)
7 diff
(98.5 %id)
CK822492 Pancreas, Purified pancreatic islet .a 8212 to 8621 1 to 410     Submitted on the opposite strand 410/410
(100 %)
7 diff
(98.3 %id)
BQ950154 sciatic nerve .a 8228 to 8903 1 to 682       682/940
(72 %)
34 diff
(96.4 %id)
AW889200 nervous_tumor .a 8241 to 8448 1 to 208       208/208
(100 %)
1 diff
(99.6 %id)
TI_149278447   .a 8315 to 9025 793 to 85   AAA   709/709
(100 %)
7 diff
(99.1 %id)
BM969321 lung, Primary Lung Epithelial Cells .a 8338 to 9025 704 to 19   AAA   686/686
(100 %)
5 diff
(99.3 %id)
BX113621 breast .a 8402 to 9025 1 to 624   AAA   624/624
(100 %)
3 diff
(99.6 %id)
R47853 breast .a 8403 to 8722 1 to 329   fully sequenced,   329/329
(100 %)
15 diff
(95.5 %id)
H44531 breast .a 8403 to 8752 1 to 359   fully sequenced,   359/359
(100 %)
6 diff
(98.4 %id)
BM504711 Pancreas, Purified pancreatic islet .a 8433 to 9027 595 to 1       595/602
(98 %)
1 diff
(99.9 %id)
EC447701 Prostate .a 8433 to 8537 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
EC462263 Prostate .a 8433 to 8537 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
BI964775 Islets of Langerhans, Pancreas .a 8491 to 8852 1 to 362   fully sequenced,   362/362
(100 %)
3 diff
(99.2 %id)
TI_154095029   .a 8556 to 9025 598 to 126   AAA   473/921
(51 %)
10 diff
(99.0 %id)
AA976441 2 pooled tumors (clear cell type), Kidney .a 8570 to 9028 464 to 7   tiling clone,   458/464
(98 %)
0 diff
(100 %id)
CA777746 Pancreas, Purified pancreatic islet .a 8578 to 9022 4 to 448   AAA   445/448
(99 %)
6 diff
(98.7 %id)
CA436690 Bone, Subchondral Bone .a 8621 to 9025 423 to 19   AAA   405/405
(100 %)
1 diff
(99.8 %id)
AA988095 carcinoid, lung .a 8639 to 8962 1 to 324     Submitted on the opposite strand 324/324
(100 %)
3 diff
(99.1 %id)
AA101151   .a 8691 to 9023 342 to 2       341/369
(92 %)
0 diff
(100 %id)
R49991 breast .a 8692 to 9025 339 to 1   fully sequenced,   339/339
(100 %)
12 diff
(96.5 %id)
H44532 breast .a 8722 to 9023 311 to 4   fully sequenced,   308/311
(99 %)
6 diff
(98.1 %id)
BI963156 Islets of Langerhans, Pancreas .a 8822 to 9031 210 to 1   fully sequenced,   210/210
(100 %)
8 diff
(96.2 %id)
AI005602 pooled germ cell tumors .a 8824 to 9022 199 to 1       199/199
(100 %)
1 diff
(99.5 %id)
AI251481 brain, tumor, 5 pooled (see description) .a 8867 to 9025 159 to 1       159/159
(100 %)
0 diff
(100 %id)
AK307934 colon .b 1 to 1586 1 to 1587 E50* tiling clone,   1587/1587
(100 %)
5 diff
(99.7 %id)
BX089207 pooled .c-u 1 to 394 68 to 461   tiling clone,   394/461
(85 %)
0 diff
(100 %id)
AI797512 pooled .c-u 256 to 632 402 to 26   tiling clone, AAA   377/377
(100 %)
11 diff
(97.1 %id)
BE939048 testis_normal .d 1 to 498 36 to 530 Q4P C9G F65I S72T L83* tiling clone,   495/540
(91 %)
11 diff
(98.0 %id)
AI114440 Liver .e 1 to 601 602 to 1 exact tiling clone,   602/608
(99 %)
1 diff
(99.9 %id)
TI_149288483   .f-u 1 to 694 770 to 79 exact tiling clone, AAA   692/692
(100 %)
2 diff
(99.8 %id)
BM970338 lung .f-u 23 to 694 689 to 19 exact tiling clone, AAA   671/671
(100 %)
1 diff
(99.9 %id)
BE770159 prostate_tumor .g-u 1 to 477 1 to 478 F10S S11L C12M H13P V14C ... tiling clone,   478/501
(95 %)
15 diff
(97.1 %id)
AA769917 pooled Gene UTP20, variant not shown         This clone was ignored    
AI208200   Gene UTP20, variant not shown         This clone was ignored    
AI702749 pooled Gene UTP20, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI