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Gene DPF3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
137 supporting clones for gene DPF3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX491479   .a -22599 to -22058 1 to 541       541/558
(96 %)
4 diff
(99.3 %id)
AK126933 brain .a 1 to 3686 2 to 3686 F36C Y262H H271Y tiling clone, available from FLJ,   3686/3686
(100 %)
4 diff
(99.9 %id)
DA215508 brain .a 1 to 503 2 to 504   capped   503/534
(94 %)
2 diff
(99.7 %id)
AA325216 brain, cerebellum .a 503 to 898 26 to 421       395/421
(93 %)
6 diff
(98.6 %id)
DA010060 adrenal gland .a 503 to 993 47 to 537   capped   490/536
(91 %)
6 diff
(98.9 %id)
DA030312   .a 503 to 1030 46 to 573   capped   527/572
(92 %)
6 diff
(99.0 %id)
BC060801 Brain, hippocampus .a 503 to 3686 46 to 3228   available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 3182/3229
(98 %)
18 diff
(99.5 %id)
BG655964 Pancreas, Purified pancreatic islet .a 503 to 965 40 to 502       462/502
(92 %)
6 diff
(98.9 %id)
DA113773 cerebellum .a 503 to 1017 46 to 560   capped   514/559
(91 %)
6 diff
(99.0 %id)
DA114633 cerebellum .a 503 to 1020 46 to 564   capped   518/563
(92 %)
9 diff
(98.5 %id)
DA115990 cerebellum .a 503 to 1040 49 to 586   capped   537/585
(91 %)
6 diff
(99.0 %id)
DA118495 cerebellum .a 503 to 997 46 to 540   capped   494/539
(91 %)
6 diff
(98.9 %id)
DA198609 brain .a 503 to 1022 46 to 565   capped   519/564
(92 %)
7 diff
(98.8 %id)
DA228489 brain .a 503 to 1019 46 to 562   capped   516/561
(91 %)
7 diff
(98.8 %id)
DA243263 brain .a 503 to 1059 46 to 602   capped   556/601
(92 %)
6 diff
(99.1 %id)
DA373325 thalamus .a 503 to 1011 41 to 549   capped   508/548
(92 %)
7 diff
(98.8 %id)
DA403200 thalamus .a 503 to 1013 46 to 556   capped   510/555
(91 %)
6 diff
(99.0 %id)
DA404191 thalamus .a 503 to 1028 44 to 569   capped   525/568
(92 %)
6 diff
(99.0 %id)
DA407279 thalamus .a 503 to 976 82 to 556   capped   474/555
(85 %)
7 diff
(98.8 %id)
DA412347 thalamus .a 503 to 1025 46 to 568   capped   522/567
(92 %)
6 diff
(99.0 %id)
DA415254 thalamus .a 503 to 999 46 to 542   capped   496/541
(91 %)
7 diff
(98.8 %id)
EL734139 mixed .a 503 to 1133 33 to 663       630/663
(95 %)
8 diff
(98.8 %id)
DA533859 brain .a 503 to 1031 46 to 574   capped   528/573
(92 %)
7 diff
(98.8 %id)
DA536539 heart .a 503 to 1041 48 to 586   capped   538/585
(91 %)
6 diff
(99.0 %id)
DA547134   .a 503 to 1031 46 to 574   capped   528/573
(92 %)
7 diff
(98.8 %id)
BC026305 Brain, hypothalamus .a 503 to 3686 46 to 3229   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 3183/3229
(98 %)
14 diff
(99.6 %id)
BG709207 brain, hypothalamus .a 503 to 1217 50 to 766   available from MGC,   716/780
(91 %)
19 diff
(97.6 %id)
BI546244 brain, hippocampus .a 503 to 1243 51 to 797       746/798
(93 %)
23 diff
(97.2 %id)
TI_44166339   .a 503 to 1243 134 to 880       746/881
(84 %)
23 diff
(97.4 %id)
BP312276 brain .a 503 to 1034 45 to 576       531/583
(91 %)
8 diff
(98.7 %id)
DA723208   .a 503 to 1036 39 to 573   capped   534/572
(93 %)
7 diff
(98.8 %id)
DA789594 brain .a 503 to 929 46 to 474   capped   428/473
(90 %)
8 diff
(98.4 %id)
DA801971 brain .a 503 to 934 46 to 477   capped   431/476
(90 %)
7 diff
(98.6 %id)
TI_1948208844   .a 503 to 1105 165 to 768   fully sequenced,   603/767
(78 %)
8 diff
(99.0 %id)
TI_1948209016   .a 503 to 1070 166 to 733   fully sequenced,   567/732
(77 %)
8 diff
(99.0 %id)
TI_1948209179   .a 503 to 1105 172 to 774   fully sequenced,   602/773
(77 %)
8 diff
(99.0 %id)
DN997240 breast cancer, Mammary gland (cancer tissue) .a 503 to 1208 43 to 748       705/748
(94 %)
8 diff
(99.0 %id)
DB140241 thymus .a 503 to 926 61 to 484   capped   423/483
(87 %)
6 diff
(98.8 %id)
DB169006 kidney, tumor tissue .a 503 to 1047 22 to 566   capped   544/565
(96 %)
8 diff
(98.6 %id)
DB175467 kidney, tumor tissue .a 503 to 1007 49 to 555   capped   506/554
(91 %)
6 diff
(99.0 %id)
BM693813 eye, lens .a 503 to 1135 30 to 662       632/662
(95 %)
5 diff
(99.3 %id)
DB276573 uterus .a 503 to 926 44 to 467   capped   423/466
(90 %)
6 diff
(98.8 %id)
CN258571 embryonic stem cells, cell lines H1, H7, andH9 .a 517 to 1159 1 to 643       643/643
(100 %)
0 diff
(100 %id)
DA127935 cerebellum .a 569 to 1159 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
AW026666 brain, glioblastoma (pooled) .a 588 to 1387 788 to 1       790/791
(99 %)
27 diff
(96.6 %id)
AI361027 brain, glioblastoma (pooled) .a 661 to 1387 721 to 1       721/791
(91 %)
11 diff
(98.7 %id)
AA714655 germinal center B cell .a 664 to 1324 661 to 1       661/683
(96 %)
7 diff
(99.0 %id)
AW976136   .a 676 to 1388 718 to 6     Submitted on the opposite strand 713/718
(99 %)
4 diff
(99.5 %id)
AI985349 Kidney .a 696 to 1387 693 to 1       693/693
(100 %)
16 diff
(97.7 %id)
AI935712 Kidney .a 742 to 1386 647 to 1       645/648
(99 %)
6 diff
(99.1 %id)
BG656289 Pancreas, Purified pancreatic islet .a 822 to 1387 569 to 4     Submitted on the opposite strand 566/569
(99 %)
8 diff
(98.6 %id)
AI479192 Kidney .a 882 to 1387 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AI361432 brain, glioblastoma (pooled) .a 900 to 1387 488 to 1       488/488
(100 %)
3 diff
(99.4 %id)
AW236736 Kidney .a 900 to 1370 471 to 1       471/471
(100 %)
0 diff
(100 %id)
BE463687 Kidney .a 900 to 1387 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AI474073 Kidney .a 912 to 1369 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
AA975166 Kidney .a 939 to 1164 226 to 1       226/226
(100 %)
5 diff
(97.8 %id)
TI_1948209017   .a 1040 to 1543 628 to 125   fully sequenced,   504/628
(80 %)
1 diff
(99.9 %id)
TI_1948208845   .a 1044 to 1543 624 to 125   fully sequenced,   500/624
(80 %)
0 diff
(100 %id)
TI_1948209180   .a 1044 to 1543 628 to 129   fully sequenced,   500/628
(79 %)
0 diff
(100 %id)
BF954875 nervous_normal .a 1077 to 1342 24 to 286       267/286
(93 %)
13 diff
(95.5 %id)
AI241260 Kidney .a 1077 to 1351 279 to 7       273/279
(97 %)
6 diff
(97.9 %id)
BF954868 nervous_normal .a 1083 to 1279 1 to 193       198/193
(102 %)
11 diff
(94.4 %id)
TI_149292793   .a 1131 to 1771 780 to 141       640/792
(80 %)
4 diff
(99.5 %id)
AW978703   .a 1375 to 2082 2 to 709       708/709
(99 %)
6 diff
(99.2 %id)
BF507754   .a 1381 to 1594 1 to 214     Submitted on the opposite strand 214/214
(100 %)
3 diff
(98.6 %id)
BF515766   .a 1381 to 1946 1 to 566     Submitted on the opposite strand 566/566
(100 %)
1 diff
(99.9 %id)
BF115874 fibrotheoma, ovary .a 1413 to 1914 1 to 502     Submitted on the opposite strand 502/502
(100 %)
1 diff
(99.9 %id)
AA824418 germinal center B cell .a 1425 to 1830 1 to 406       406/406
(100 %)
1 diff
(99.8 %id)
AA860634 parathyroid gland, parathyroid tumor .a 1439 to 1814 1 to 376     Submitted on the opposite strand 376/376
(100 %)
0 diff
(100 %id)
H85607 eye, retina .a 1459 to 1737 1 to 280     Submitted on the opposite strand 280/291
(96 %)
1 diff
(99.7 %id)
AA781708 parathyroid gland, parathyroid tumor .a 1517 to 1837 1 to 321     Submitted on the opposite strand 321/321
(100 %)
1 diff
(99.7 %id)
BE245618 leukopheresis .a 1613 to 1916 1 to 304       304/304
(100 %)
59 diff
(80.6 %id)
BE245146 leukopheresis .a 1613 to 2137 1 to 524       524/524
(100 %)
4 diff
(99.3 %id)
DB172058 kidney, tumor tissue .a 1630 to 2203 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DN995124 brain, whole brain .a 1714 to 2219 95 to 600       506/600
(84 %)
6 diff
(99.0 %id)
F12896 brain, total brain .a 1774 to 2081 1 to 308       308/308
(100 %)
0 diff
(100 %id)
T74990 whole brain .a 1803 to 2090 1 to 288       288/288
(100 %)
3 diff
(99.0 %id)
DA945331 Spleen .a 1851 to 2419 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BC021812 Liver, adenocarcinoma .a 1895 to 3686 1 to 1791   available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1791/1791
(100 %)
4 diff
(99.8 %id)
BG252756 adenocarcinoma, cell line, Liver .a 1895 to 2555 1 to 676   available from MGC,   676/1065
(63 %)
17 diff
(98.5 %id)
AK123045 skeletal muscle .a 1938 to 3686 1 to 1749   available from FLJ,   1749/1749
(100 %)
0 diff
(100 %id)
DA893618 skeletal muscle .a 1939 to 2500 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BU738252 eye, lens .a 2222 to 2636 448 to 34   AAA   415/430
(96 %)
0 diff
(100 %id)
DB465897 hippocampus .a 2393 to 2811 1 to 419       419/419
(100 %)
1 diff
(99.8 %id)
DA380384 thalamus .a 2403 to 2958 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BX115549 eye, retina .a 2485 to 3269 785 to 1     Submitted on the opposite strand 785/785
(100 %)
0 diff
(100 %id)
BX491480   .a 2627 to 3262 659 to 22   AAA   638/638
(100 %)
3 diff
(99.6 %id)
DB527248 testis .a 2855 to 3315 1 to 461     Submitted on the opposite strand 461/463
(99 %)
4 diff
(99.2 %id)
DB518045 testis .a 2887 to 3320 1 to 434     Submitted on the opposite strand 434/434
(100 %)
2 diff
(99.6 %id)
AA977920 Kidney, kidney tumor .a 2976 to 3306 331 to 1       331/331
(100 %)
2 diff
(99.4 %id)
R45256 whole brain .a 2998 to 3339 357 to 8       350/369
(94 %)
0 diff
(100 %id)
AA926839 pooled .a 3038 to 3334 307 to 11   AAA   297/297
(100 %)
2 diff
(99.4 %id)
F10504 brain, total brain .a 3134 to 3328 200 to 8       193/208
(92 %)
0 diff
(100 %id)
DB304680 brain .a 3146 to 3686 542 to 1       542/542
(100 %)
1 diff
(99.9 %id)
DB330912 skeletal muscle .a 3155 to 3686 534 to 1       534/534
(100 %)
2 diff
(99.7 %id)
DB050479 testis .b 1 to 548 4 to 551   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
DB082708 testis .b 1 to 467 2 to 468   capped   467/467
(100 %)
1 diff
(99.8 %id)
AY803021 heart .b 399 to 1504 33 to 1138   tiling clone,   1105/1138
(97 %)
6 diff
(99.5 %id)
BF528696 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1433 to 2236 11 to 805   tiling clone,   795/986
(80 %)
18 diff
(98.2 %id)
AK294425 amygdala .c 1 to 1514 1 to 1514 S358P tiling clone,   1514/1514
(100 %)
1 diff
(100.0 %id)
DC317104 amygdala .c 1 to 494 1 to 494       494/497
(99 %)
1 diff
(99.8 %id)
NM_012074.3   .c 190 to 2415 46 to 2271   RefSeq,   2225/2271
(97 %)
6 diff
(99.8 %id)
DA126348 cerebellum .d 1 to 597 2 to 598   tiling clone, capped   597/597
(100 %)
0 diff
(100 %id)
CV380260 nervous_normal .d 461 to 937 6 to 480   tiling clone,   480/480
(100 %)
34 diff
(93.0 %id)
BF950630 nervous_normal .d 472 to 1057 1 to 585   tiling clone,   590/585
(100 %)
10 diff
(98.3 %id)
BF954790 nervous_normal .d 731 to 1026 1 to 298       298/298
(100 %)
11 diff
(96.4 %id)
AL698522 human skeletal muscle .e 1 to 615 50 to 664 R123X tiling clone,   614/664
(92 %)
6 diff
(99.1 %id)
TI_157609644   .f 1 to 611 689 to 77 exact tiling clone,   613/690
(88 %)
10 diff
(98.6 %id)
TI_157609626   .f 6 to 611 688 to 78 E8X L16X tiling clone,   611/693
(88 %)
17 diff
(97.6 %id)
TI_157602496   .f 50 to 611 621 to 60 G10A     562/623
(90 %)
8 diff
(98.8 %id)
AI628765 Kidney .f 80 to 592 513 to 1   tiling clone,   513/513
(100 %)
0 diff
(100 %id)
AW771496 Kidney .f 109 to 610 502 to 1       502/502
(100 %)
0 diff
(100 %id)
DA105422 cerebellum .g 1 to 536 46 to 581 exact tiling clone, capped   535/580
(92 %)
6 diff
(99.0 %id)
AK126074 testis .h 1 to 3754 2 to 3753 exact tiling clone, available from FLJ,   3753/3753
(100 %)
3 diff
(100.0 %id)
DB091683 testis .h 1 to 557 2 to 558 exact capped   557/557
(100 %)
0 diff
(100 %id)
DB091715 testis .h 1 to 553 2 to 554 exact capped   553/553
(100 %)
0 diff
(100 %id)
AK124946 subthalamic nucleus .h 649 to 3753 1 to 3099   tiling clone, available from FLJ,   3099/3099
(100 %)
11 diff
(99.7 %id)
AI125562   .h 2345 to 2931 587 to 1       587/587
(100 %)
0 diff
(100 %id)
H72433 liver and spleen .h 2369 to 2712 1 to 344   fully sequenced,   344/344
(100 %)
5 diff
(98.6 %id)
H49733 liver and spleen .h 2403 to 2834 1 to 433   fully sequenced,   433/433
(100 %)
11 diff
(97.5 %id)
R02269 liver and spleen .h 2508 to 2927 431 to 6       426/432
(98 %)
0 diff
(100 %id)
AA954321 pooled .h 2624 to 2924 299 to 1       299/299
(100 %)
3 diff
(99.0 %id)
H49646 liver and spleen .h 2642 to 2840 202 to 1   fully sequenced,   202/202
(100 %)
0 diff
(100 %id)
H72344 liver and spleen .h 2682 to 2922 243 to 1   fully sequenced,   243/243
(100 %)
0 diff
(100 %id)
DB532819 hippocampus .h 2712 to 2927 1 to 217     Submitted on the opposite strand 217/220
(98 %)
4 diff
(98.2 %id)
T59085 fetal spleen, Spleen .h 3021 to 3381 1 to 374       374/415
(90 %)
20 diff
(95.2 %id)
AI984623 Kidney .h 3199 to 3751 556 to 2       555/556
(99 %)
0 diff
(100 %id)
DB341463 testis .h 3220 to 3754 535 to 1       535/535
(100 %)
0 diff
(100 %id)
DB310637 subthalamic nucleus .h 3230 to 3753 524 to 1       524/524
(100 %)
1 diff
(99.9 %id)
BM661691 eye, Retina Foveal and Macular .h 3274 to 3545 298 to 27       272/298
(91 %)
0 diff
(100 %id)
AA909451 pooled .h 3378 to 3753 376 to 1       376/376
(100 %)
0 diff
(100 %id)
AW183347 pooled .h 3381 to 3753 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
BM692018 eye, human retina .h 3417 to 3753 1 to 337   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 337/337
(100 %)
0 diff
(100 %id)
F34304 pectoral muscle (after mastectomy) .h 3437 to 3741 1 to 306       306/306
(100 %)
4 diff
(98.7 %id)
AA917988 pooled .h 3471 to 3751 282 to 2       281/282
(99 %)
0 diff
(100 %id)
AI468079 anaplastic oligodendroglioma, brain .h 3487 to 3760 275 to 1   tiling clone,   275/275
(100 %)
1 diff
(99.7 %id)
DB461832 testis .i 1 to 487 1 to 487 exact tiling clone,   487/487
(100 %)
1 diff
(99.8 %id)
DB452608 testis .j 1 to 475 4 to 478       478/478
(100 %)
2 diff
(99.6 %id)
DB063223 testis .j 1 to 544 4 to 547 R92S tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DA543363   .k 1 to 568 2 to 569 exact tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
AA854024   .l-u 1 to 558 560 to 3 exact tiling clone,   558/560
(99 %)
0 diff
(100 %id)
AA889110 pooled .l-u 152 to 560 409 to 1 V50L     409/409
(100 %)
2 diff
(99.6 %id)
AW001727 Kidney .m 1 to 482 482 to 1 exact tiling clone,   482/482
(100 %)
1 diff
(99.8 %id)
BQ637638 eye, retina Gene DPF3, variant not shown         Suspected internal deletion, this clone was ignored    
AU121124 whole embryo, mainly body Gene DPF3, variant not shown       capped This clone was ignored    
DA173971 amygdala Gene DPF3, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB311210 thalamus Gene DPF3, variant not shown         This clone was ignored    
DA376973 thalamus Gene DPF3, variant not shown       capped This clone was ignored    
BM805160 ovary (pool of 3) Gene DPF3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C