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Gene DPF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
82 supporting clones for gene DPF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR614366 fetal brain .a 1 to 2341 1 to 2341 exact tiling clone,   2341/2341
(100 %)
0 diff
(100 %id)
AL538568 brain, fetal brain .a 1 to 1025 1 to 1017       1017/1108
(91 %)
11 diff
(99.1 %id)
DR002028 fetal brain .a 41 to 589 1 to 550       550/550
(100 %)
5 diff
(99.1 %id)
BG702835 brain, hippocampus .a 43 to 800 1 to 758       758/758
(100 %)
10 diff
(98.7 %id)
BX394192 Neuroblastoma Cot 25-normalized .a 49 to 1026 1 to 973       973/973
(100 %)
12 diff
(98.8 %id)
BI917298 brain .a 51 to 801 1 to 749       749/749
(100 %)
5 diff
(99.4 %id)
TI_57242204   .a 51 to 801 34 to 782       749/782
(95 %)
11 diff
(98.6 %id)
BF982601 duodenal adenocarcinoma, cell line, small intestine .a 148 to 842 1 to 690       690/930
(74 %)
6 diff
(99.4 %id)
BQ893290 epidermoid carcinoma, cell line, salivary gland .a 600 to 1337 1 to 747       747/910
(82 %)
22 diff
(97.6 %id)
BU157197 melanotic melanoma, cell line, skin .a 602 to 1421 1 to 833       833/915
(91 %)
21 diff
(97.8 %id)
BX409992 brain, fetal brain .a 919 to 1427 13 to 523       511/523
(97 %)
12 diff
(97.8 %id)
AI885645 anaplastic oligodendroglioma, brain .a 1244 to 1667 424 to 1       424/478
(88 %)
12 diff
(97.5 %id)
AL567380 brain, fetal brain .a 1351 to 2332 978 to 10       969/1033
(93 %)
0 diff
(100 %id)
BG056460 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 1511 to 1685 175 to 1       175/175
(100 %)
0 diff
(100 %id)
AI754148 bone marrow stroma .a 1513 to 1667 176 to 22   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 155/155
(100 %)
0 diff
(100 %id)
AW139456   .a 1513 to 1667 172 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 155/155
(100 %)
1 diff
(99.4 %id)
BI522779 brain .a 1817 to 2128 1 to 311       311/313
(99 %)
8 diff
(97.5 %id)
BI523406 brain .a 1817 to 2306 500 to 6       495/500
(99 %)
0 diff
(100 %id)
TI_44185732   .a 1817 to 2306 500 to 6       495/751
(65 %)
0 diff
(100 %id)
DB576275 hypothalamus .a 1881 to 2374 1 to 494     Submitted on the opposite strand 494/494
(100 %)
1 diff
(99.8 %id)
AI857563 anaplastic oligodendroglioma, brain .a 1902 to 2375 475 to 4       472/475
(99 %)
0 diff
(100 %id)
AI859148 anaplastic oligodendroglioma, brain .a 1903 to 2371 488 to 19       470/488
(96 %)
0 diff
(100 %id)
AI885717 anaplastic oligodendroglioma, brain .a 1941 to 2377 458 to 21   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 438/438
(100 %)
20 diff
(95.5 %id)
AI360978 brain, glioblastoma (pooled) .a 1984 to 2374 391 to 1       391/391
(100 %)
2 diff
(99.5 %id)
BE857088 brain, glioblastoma (pooled) .a 1984 to 2374 391 to 1       391/391
(100 %)
4 diff
(99.0 %id)
BF941456 brain, glioblastoma (pooled) .a 2082 to 2374 293 to 1       293/293
(100 %)
6 diff
(98.0 %id)
AI368367 brain, glioblastoma (pooled) .a 2127 to 2375 250 to 1       250/250
(100 %)
1 diff
(99.6 %id)
BE857212 brain, glioblastoma (pooled) .a 2144 to 2374 231 to 1       231/231
(100 %)
2 diff
(99.2 %id)
AW748396 breast .a 2236 to 2483 258 to 5   tiling clone,   254/258
(98 %)
0 diff
(100 %id)
NM_001135156.1   .b 1 to 2306 1 to 2306 exact RefSeq,   2306/2306
(100 %)
2 diff
(100.0 %id)
BC021191 Brain, neuroblastoma .b 5 to 1595 1 to 1592   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1592/1592
(100 %)
2 diff
(99.9 %id)
BU176742 eye, retinoblastoma .b 328 to 1173 1 to 854       854/859
(99 %)
12 diff
(98.7 %id)
BG519601 brain, neuroblastoma .b 492 to 1334 1 to 887       691/889
(77 %)
45 diff
(95.0 %id)
T08050   .b 512 to 841 1 to 332       332/332
(100 %)
4 diff
(98.8 %id)
BF527391 anaplastic oligodendroglioma with 1p/19qloss, brain .b 662 to 1377 1 to 720       720/724
(99 %)
6 diff
(99.2 %id)
BF970565 adrenal cortex carcinoma, cell line, adrenal gland .b 813 to 1531 2 to 726   tiling clone,   725/1056
(68 %)
20 diff
(98.2 %id)
BG775271 carcinoma, cell line, Prostate .b 820 to 1564 1 to 747       747/918
(81 %)
13 diff
(98.6 %id)
BQ947798 carcinoma, cell line, Prostate .b 823 to 1355 1 to 534       534/538
(99 %)
3 diff
(99.5 %id)
R21096 whole brain .b 853 to 1164 1 to 314       314/314
(100 %)
2 diff
(99.4 %id)
BE392893 endometrium, adenocarcinoma cell line, uterus .b 878 to 1162 1 to 285       285/285
(100 %)
0 diff
(100 %id)
BE378282 endometrium, adenocarcinoma cell line, uterus .b 925 to 1445 1 to 519       519/519
(100 %)
6 diff
(98.9 %id)
BF315410 brain, neuroblastoma .b 941 to 1605 1 to 678       678/845
(80 %)
42 diff
(95.1 %id)
BF315755 brain, neuroblastoma .b 941 to 1583 1 to 643       643/945
(68 %)
15 diff
(98.5 %id)
BF509108   .b 1050 to 1595 563 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 546/546
(100 %)
2 diff
(99.7 %id)
AI676194 adenocarcinoma, Pancreas .b 1104 to 1585 490 to 11       480/491
(97 %)
11 diff
(97.8 %id)
NM_001135155.1   .c 1 to 2328 2 to 2329 exact RefSeq,   2329/2329
(100 %)
2 diff
(100.0 %id)
DA076421 cerebellum .c 1 to 579 2 to 581   tiling clone, capped   580/580
(100 %)
1 diff
(99.9 %id)
BX460149.
matches multiple genes
brain, fetal brain .c 4 to 998 1 to 993     also hits gene CPT1C 993/997
(99 %)
15 diff
(98.5 %id)
DB489099 hypothalamus .c 54 to 725 1 to 672       672/673
(99 %)
4 diff
(99.5 %id)
DA780697 brain .c 64 to 638 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BC125153 PCR rescued clones .c 98 to 1360 1 to 1263   tiling clone,   1263/1263
(100 %)
5 diff
(99.7 %id)
GQ358728   .d 1 to 1194 1 to 1194 exact tiling clone,   1194/1194
(100 %)
0 diff
(100 %id)
CR604718 Neuroblastoma Cot 50-normalized .e 1 to 1562 1 to 1562 exact tiling clone,   1562/1562
(100 %)
0 diff
(100 %id)
AL529673 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 1 to 899 1 to 896   fully sequenced,   896/896
(100 %)
5 diff
(99.5 %id)
AL563514 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 838 to 1562 730 to 1   fully sequenced,   670/670
(100 %)
47 diff
(93.0 %id)
NM_004647.2   .f 1 to 2226 2 to 2227 exact RefSeq,   2227/2227
(100 %)
2 diff
(100.0 %id)
U43843 brainstem .f 102 to 1515 1 to 1411   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1411/1411
(100 %)
4 diff
(99.8 %id)
AK094632 amygdala .g 1 to 1944 2 to 1945 exact tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1945/1945
(100 %)
1 diff
(100.0 %id)
DA157566 amygdala .g 1 to 463 2 to 465   capped Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 464/468
(99 %)
2 diff
(99.6 %id)
BX461049 brain, fetal brain .g 464 to 1315 94 to 943   tiling clone,   953/943
(101 %)
61 diff
(93.6 %id)
DB301987 amygdala .g 1421 to 1944 540 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 524/524
(100 %)
0 diff
(100 %id)
BX435280 brain, fetal brain .g 2078 to 2644 576 to 8   tiling clone,   569/725
(78 %)
0 diff
(100 %id)
AU310109 neuroblastoma .h 1 to 587 14 to 600   tiling clone,   587/600
(97 %)
6 diff
(99.0 %id)
BM926947 brain .h 9 to 532 9 to 533       525/1373
(38 %)
18 diff
(98.7 %id)
BM921496 pooled brain, lung, testis .h 43 to 946 10 to 923 L100R I184H G185R L187V R188S ... tiling clone,   914/1070
(85 %)
35 diff
(96.8 %id)
AK308563 cerebellum .i 1 to 1248 2 to 1249 exact tiling clone,   1249/1249
(100 %)
1 diff
(100.0 %id)
BC125152 PCR rescued clones .i 98 to 1566 1 to 1469   tiling clone,   1469/1469
(100 %)
7 diff
(99.6 %id)
BG700696 brain, hippocampus .j 1 to 683 1 to 683 R4G S15P H36D P76A tiling clone,   683/683
(100 %)
9 diff
(98.7 %id)
BM710727 eye, fetal eyes .k 1 to 542 1 to 542   tiling clone, Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 542/542
(100 %)
0 diff
(100 %id)
BU736337 eye, fetal eyes .k 735 to 890 174 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 156/156
(100 %)
0 diff
(100 %id)
BE796774 lung, small cell carcinoma .l 1 to 428 1 to 428 T11R tiling clone,   428/428
(100 %)
1 diff
(99.8 %id)
BI668246 brain, hypothalamus .m 1 to 690 1 to 689 exact tiling clone,   689/690
(99 %)
10 diff
(98.6 %id)
DB492700 hypothalamus .m 6 to 321 1 to 318       318/318
(100 %)
9 diff
(97.2 %id)
DB505006 hypothalamus .m 6 to 485 1 to 480       480/480
(100 %)
0 diff
(100 %id)
TI_44346388   .m 7 to 690 123 to 805 exact     683/806
(84 %)
12 diff
(98.6 %id)
AK127198 hippocampus .n 1 to 2298 2 to 2298 exact tiling clone, available from FLJ,   2298/2298
(100 %)
25 diff
(99.0 %id)
DA307015 hippocampus .n 1 to 564 2 to 564   capped   563/563
(100 %)
22 diff
(96.1 %id)
DB308291 hippocampus .n 1754 to 2298 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
AK297581 brain Gene DPF1, variant not shown         Suspected internal deletion, this clone was ignored    
DA170391 amygdala Gene DPF1, variant not shown       capped This clone was ignored    
BX117254 anaplastic oligodendroglioma, brain Gene DPF1, variant not shown         This clone was ignored    
DC353376 brain Gene DPF1, variant not shown         Suspected internal deletion, this clone was ignored    
AU144886 whole embryo, mainly head Gene DPF1, variant not shown         This clone was ignored    
AU118287 whole embryo, mainly head Gene DPF1, variant not shown       capped This clone was ignored    
AU145525 whole embryo, mainly head Gene DPF1, variant not shown         Suspected internal deletion, this clone was ignored    
DA570583 whole embryo, mainly head Gene DPF1, variant not shown       capped Suspected internal deletion, this clone was ignored    
AI364101 anaplastic oligodendroglioma, brain Gene DPF1, variant not shown         This clone was ignored    
AI939563 anaplastic oligodendroglioma, brain Gene DPF1, variant not shown         This clone was ignored    
BF345550 anaplastic oligodendroglioma with 1p/19qloss, brain Gene DPF1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI