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Gene DNMT3BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
276 supporting clones for gene DNMT3B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF331857   .a 1 to 4335 1 to 4335 exact tiling clone,   4335/4335
(100 %)
0 diff
(100 %id)
NM_006892.3   .a 1 to 4335 1 to 4335 exact RefSeq, AAA   4335/4335
(100 %)
0 diff
(100 %id)
AF156488   .a 227 to 4335 20 to 4127   AAA   4108/4127
(99 %)
11 diff
(99.8 %id)
BC111933 Synthetic constructs .a 321 to 2886 34 to 2599       2566/2620
(97 %)
11 diff
(99.6 %id)
BC118502 Synthetic constructs .a 321 to 2886 34 to 2599       2566/2620
(97 %)
13 diff
(99.6 %id)
CX785977 human embryonic stem cells .a 741 to 1604 1 to 864       864/864
(100 %)
0 diff
(100 %id)
DR156896 human embryonic stem cells differentiated toan early endodermal cell type .a 926 to 1766 1 to 841       841/841
(100 %)
0 diff
(100 %id)
BE279495 choriocarcinoma, placenta .a 975 to 1618 1 to 642       642/688
(93 %)
5 diff
(99.3 %id)
CN354339 embryonic stem cells, cell lines H1, H7, andH9 .a 977 to 1557 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
CN354365 embryonic stem cells, cell lines H1, H7, andH9 .a 982 to 1754 1 to 772       772/772
(100 %)
3 diff
(99.7 %id)
CN354345 embryonic stem cells, cell lines H1, H7, andH9 .a 984 to 1608 13 to 636       624/636
(98 %)
6 diff
(99.1 %id)
TI_1286644855   .a 1007 to 1618 19 to 630       612/687
(89 %)
11 diff
(98.4 %id)
CN354367 embryonic stem cells, cell lines H1, H7, andH9 .a 1010 to 1766 1 to 756       756/756
(100 %)
1 diff
(99.9 %id)
CN354346 embryonic stem cells, cell lines H1, H7, andH9 .a 1011 to 1730 1 to 720       720/720
(100 %)
2 diff
(99.8 %id)
CN354349 embryonic stem cells, cell lines H1, H7, andH9 .a 1055 to 1779 1 to 725       725/725
(100 %)
5 diff
(99.4 %id)
CX754364 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 1057 to 1776 19 to 737     Submitted on the opposite strand 719/738
(97 %)
13 diff
(98.3 %id)
BQ277772 ovary, teratocarcinoma, cell line .a 1098 to 2081 1 to 984       984/1037
(94 %)
16 diff
(98.5 %id)
BU850032 ovary, teratocarcinoma, cell line .a 1098 to 1986 1 to 894       894/895
(99 %)
22 diff
(97.6 %id)
BU854958 ovary, teratocarcinoma, cell line .a 1098 to 1821 1 to 724       724/836
(86 %)
3 diff
(99.7 %id)
BU931756 ovary, teratocarcinoma, cell line .a 1098 to 1814 1 to 723       723/834
(86 %)
11 diff
(98.7 %id)
AU123592   .a 1130 to 1888 2 to 759   capped   758/761
(99 %)
7 diff
(99.1 %id)
CX759515 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 1164 to 1912 1 to 746     Submitted on the opposite strand 746/746
(100 %)
6 diff
(99.2 %id)
CX781164 human embryonic stem cells .a 1165 to 1987 1 to 823       823/823
(100 %)
1 diff
(99.9 %id)
CN354328 embryonic stem cells, cell lines H1, H7, andH9 .a 1179 to 1808 1 to 631       631/631
(100 %)
2 diff
(99.7 %id)
DA666918   .a 1181 to 1733 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
TI_1286644858   .a 1184 to 1814 7 to 637       631/637
(99 %)
7 diff
(99.0 %id)
TI_1105485202   .a 1186 to 1592 407 to 1       407/407
(100 %)
0 diff
(100 %id)
CN354335 embryonic stem cells, cell lines H1, H7, andH9 .a 1232 to 1832 6 to 606       601/608
(98 %)
3 diff
(99.6 %id)
CN354348 embryonic stem cells, cell lines H1, H7, andH9 .a 1234 to 1864 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
TI_1132750825   .a 1299 to 1928 630 to 1       630/630
(100 %)
0 diff
(100 %id)
TI_1105485201   .a 1304 to 1951 648 to 1       648/648
(100 %)
0 diff
(100 %id)
CN354326 embryonic stem cells, cell lines H1, H7, andH9 .a 1319 to 2004 1 to 687       687/687
(100 %)
4 diff
(99.5 %id)
TI_1286644849   .a 1326 to 1984 659 to 1       659/659
(100 %)
1 diff
(99.9 %id)
CN354322 embryonic stem cells, cell lines H1, H7, andH9 .a 1345 to 1884 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
TI_1286644848   .a 1368 to 1976 607 to 1       607/608
(99 %)
5 diff
(99.2 %id)
TI_1286644847   .a 1384 to 1976 593 to 2       592/593
(99 %)
0 diff
(100 %id)
TI_1286644841   .a 1385 to 2082 733 to 33       701/747
(93 %)
20 diff
(97.4 %id)
TI_1132750819   .a 1388 to 1669 281 to 1       281/281
(100 %)
0 diff
(100 %id)
CN354338 embryonic stem cells, cell lines H1, H7, andH9 .a 1400 to 1992 1 to 592       592/592
(100 %)
2 diff
(99.7 %id)
CN354363 embryonic stem cells, cell lines H1, H7, andH9 .a 1400 to 2025 1 to 626       626/626
(100 %)
2 diff
(99.7 %id)
TI_1105485220   .a 1419 to 1961 543 to 1       543/543
(100 %)
0 diff
(100 %id)
CX781097 human embryonic stem cells .a 3757 to 4335 604 to 26   AAA   579/579
(100 %)
5 diff
(99.2 %id)
NM_175848.1   .b 1 to 4275 1 to 4275 exact RefSeq, AAA   4275/4275
(100 %)
0 diff
(100 %id)
TI_1286644863   .b 1953 to 2591 10 to 654       645/657
(98 %)
21 diff
(96.9 %id)
TI_1286644862   .b 1964 to 2568 17 to 621   tiling clone,   605/622
(97 %)
18 diff
(97.2 %id)
CN354337 embryonic stem cells, cell lines H1, H7, andH9 .b 1972 to 2678 1 to 709   tiling clone,   709/709
(100 %)
3 diff
(99.6 %id)
BE541927 cervix .b 2019 to 2657 9 to 642       634/750
(84 %)
28 diff
(96.3 %id)
CN354343 embryonic stem cells, cell lines H1, H7, andH9 .b 2049 to 2852 13 to 816       804/816
(98 %)
6 diff
(99.3 %id)
CN354355 embryonic stem cells, cell lines H1, H7, andH9 .b 2065 to 2631 1 to 567       567/567
(100 %)
0 diff
(100 %id)
TI_1286644856   .b 2072 to 2752 20 to 699       680/708
(96 %)
13 diff
(98.2 %id)
CN354327 embryonic stem cells, cell lines H1, H7, andH9 .b 2088 to 2843 7 to 762       756/762
(99 %)
7 diff
(99.1 %id)
CN354356 embryonic stem cells, cell lines H1, H7, andH9 .b 2117 to 2851 1 to 737       737/737
(100 %)
3 diff
(99.6 %id)
CN354331 embryonic stem cells, cell lines H1, H7, andH9 .b 2135 to 2623 1 to 489       489/489
(100 %)
0 diff
(100 %id)
AF129267 testis .b 2167 to 4275 1 to 2109   tiling clone, AAA   2109/2109
(100 %)
0 diff
(100 %id)
BE536203 cervix .b 2201 to 2774 1 to 585       583/585
(99 %)
21 diff
(96.5 %id)
CD654323 Embryonic Stem cells .b 2248 to 3038 11 to 794       784/819
(95 %)
13 diff
(98.5 %id)
DA730763   .b 2284 to 3150 2 to 865   capped   864/870
(99 %)
17 diff
(98.1 %id)
TI_1105485200   .b 2287 to 2820 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
CX755310 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 2317 to 3023 1 to 707     Submitted on the opposite strand 707/707
(100 %)
0 diff
(100 %id)
TI_1286644838   .b 2321 to 2826 612 to 107       506/612
(82 %)
4 diff
(99.4 %id)
TI_1105485217   .b 2332 to 2820 489 to 1       489/489
(100 %)
1 diff
(99.8 %id)
TI_1105485188   .b 2349 to 2826 485 to 8       478/485
(98 %)
1 diff
(99.8 %id)
CN354353 embryonic stem cells, DMSO-treated H9 cellline .b 2374 to 2852 7 to 485       479/485
(98 %)
6 diff
(98.8 %id)
AA305044 colon .b 2380 to 2903 1 to 522       522/522
(100 %)
3 diff
(99.5 %id)
TI_1286644865   .b 2405 to 2826 39 to 460       422/580
(72 %)
11 diff
(98.2 %id)
TI_1286644837   .b 2429 to 2826 519 to 122       398/519
(76 %)
0 diff
(100 %id)
CX759231 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 2435 to 3190 1 to 744     Submitted on the opposite strand 744/814
(91 %)
16 diff
(98.1 %id)
CN354358 embryonic stem cells, cell lines H1, H7, andH9 .b 2477 to 3201 1 to 724       724/724
(100 %)
1 diff
(99.9 %id)
CX165858 human embryonic stem cells differentiated toan early endodermal cell type .b 2521 to 3327 1 to 807       807/807
(100 %)
0 diff
(100 %id)
CX782108 human embryonic stem cells .b 2534 to 3339 1 to 806       806/810
(99 %)
1 diff
(99.9 %id)
CX783664 human embryonic stem cells .b 2538 to 3245 1 to 707       707/707
(100 %)
1 diff
(99.9 %id)
CX757231 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 2597 to 3369 1 to 768     Submitted on the opposite strand 768/800
(96 %)
11 diff
(98.7 %id)
CX783488 human embryonic stem cells .b 2668 to 3494 1 to 827       827/827
(100 %)
1 diff
(99.9 %id)
AU148757   .b 3709 to 4275 573 to 1       573/573
(100 %)
10 diff
(98.3 %id)
NM_175849.1   .c 1 to 4086 1 to 4086 exact RefSeq, AAA   4086/4086
(100 %)
0 diff
(100 %id)
CN354359 embryonic stem cells, cell lines H1, H7, andH9 .c 17 to 139 1 to 123   tiling clone,   123/123
(100 %)
2 diff
(98.4 %id)
CN354321 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 28 to 187 1 to 160       160/160
(100 %)
1 diff
(99.4 %id)
CN354341 embryonic stem cells, cell lines H1, H7, andH9 .c 40 to 486 7 to 453       447/453
(98 %)
0 diff
(100 %id)
CN354368 embryonic stem cells, cell lines H1, H7, andH9 .c 59 to 210 1 to 152       152/152
(100 %)
0 diff
(100 %id)
BE046956 pooled germ cell tumors .c 63 to 290 1 to 228     Submitted on the opposite strand 228/228
(100 %)
0 diff
(100 %id)
CN354324 embryonic stem cells, cell lines H1, H7, andH9 .c 70 to 193 1 to 124       124/124
(100 %)
1 diff
(99.2 %id)
AI971551 pooled germ cell tumors .c 86 to 556 1 to 471   tiling clone, Submitted on the opposite strand 471/471
(100 %)
1 diff
(99.8 %id)
AW193785 pooled germ cell tumors .c 86 to 751 1 to 672     Submitted on the opposite strand 672/730
(92 %)
13 diff
(98.3 %id)
AF156487   .c 227 to 4086 20 to 3879   tiling clone, AAA   3860/3879
(99 %)
10 diff
(99.8 %id)
DR000312 fetal brain .c 266 to 1003 9 to 746       738/746
(98 %)
6 diff
(99.2 %id)
BF689687 melanotic melanoma, high MDR (cell line), skin .c 286 to 698 37 to 446       410/474
(86 %)
22 diff
(95.4 %id)
CD652846 Embryonic Stem cells .c 293 to 1056 41 to 797       757/824
(91 %)
15 diff
(98.2 %id)
TI_1286644866   .c 321 to 874 111 to 664       554/664
(83 %)
6 diff
(99.1 %id)
TI_1105485223   .c 321 to 780 460 to 1       460/467
(98 %)
1 diff
(99.8 %id)
TI_1132750829   .c 321 to 736 416 to 1       416/423
(98 %)
1 diff
(99.8 %id)
TI_1132750830   .c 321 to 751 431 to 1       431/438
(98 %)
1 diff
(99.8 %id)
TI_1105485191   .c 322 to 753 433 to 2       432/433
(99 %)
0 diff
(100 %id)
TI_1105485204   .c 322 to 727 406 to 1       406/406
(100 %)
1 diff
(99.8 %id)
AI954642 pooled germ cell tumors .c 324 to 423 1 to 100     Submitted on the opposite strand 100/100
(100 %)
0 diff
(100 %id)
CN354352 embryonic stem cells, cell lines H1, H7, andH9 .c 464 to 1132 1 to 670       670/670
(100 %)
3 diff
(99.6 %id)
CN354314 embryonic stem cells, cell lines H1, H7, andH9 .c 518 to 939 1 to 422       422/422
(100 %)
0 diff
(100 %id)
CD657752 Embryonic Stem cells .c 520 to 1309 7 to 790       784/818
(95 %)
29 diff
(96.5 %id)
TI_1105485203   .c 537 to 1214 678 to 1       678/678
(100 %)
1 diff
(99.9 %id)
CD643397 Embryonic Stem cells .c 582 to 1389 12 to 809       798/819
(97 %)
21 diff
(97.5 %id)
CN354336 embryonic stem cells, cell lines H1, H7, andH9 .c 587 to 1238 1 to 652       652/652
(100 %)
2 diff
(99.7 %id)
CN354325 embryonic stem cells, cell lines H1, H7, andH9 .c 603 to 976 1 to 377       377/378
(99 %)
10 diff
(97.4 %id)
CN354332 embryonic stem cells, cell lines H1, H7, andH9 .c 628 to 834 10 to 216       207/216
(95 %)
1 diff
(99.6 %id)
CD654631 Embryonic Stem cells .c 640 to 1336 7 to 700       694/768
(90 %)
14 diff
(98.2 %id)
CN354360 embryonic stem cells, cell lines H1, H7, andH9 .c 687 to 922 1 to 236       236/236
(100 %)
1 diff
(99.6 %id)
TI_1132750828   .c 700 to 1179 480 to 1       480/482
(99 %)
0 diff
(100 %id)
TI_1105485222   .c 747 to 896 150 to 1       150/150
(100 %)
0 diff
(100 %id)
TI_1286644857   .c 772 to 1387 1 to 618       618/693
(89 %)
15 diff
(97.9 %id)
TI_1105485190   .c 826 to 1179 354 to 1       354/354
(100 %)
0 diff
(100 %id)
BM551021 amelanotic melanoma, cell line, skin .c 835 to 1646 19 to 832       814/1086
(74 %)
26 diff
(97.7 %id)
BM010029 amelanotic melanoma, cell line, skin .c 839 to 1517 1 to 679       679/679
(100 %)
1 diff
(99.9 %id)
TI_59384820   .c 840 to 1517 59 to 736       678/678
(100 %)
0 diff
(100 %id)
TI_1132750827   .c 857 to 1355 499 to 1       499/499
(100 %)
0 diff
(100 %id)
TI_1105485207   .c 898 to 1196 299 to 1       299/299
(100 %)
0 diff
(100 %id)
TI_1132750820   .c 942 to 1299 358 to 1       358/358
(100 %)
0 diff
(100 %id)
CN354351 embryonic stem cells, cell lines H1, H7, andH9 .c 971 to 1229 1 to 259       259/259
(100 %)
2 diff
(99.3 %id)
TI_1105485208   .c 989 to 1154 166 to 1       166/166
(100 %)
0 diff
(100 %id)
BG423414 Kidney, renal cell adenocarcinoma .c 1305 to 1956 1 to 664       664/1150
(57 %)
28 diff
(97.6 %id)
CN354342 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1391 to 1626 1 to 236       236/236
(100 %)
1 diff
(99.6 %id)
TI_1105485221   .c 1391 to 1900 510 to 1       510/510
(100 %)
0 diff
(100 %id)
TI_1132750826   .c 1395 to 1867 473 to 1       473/473
(100 %)
0 diff
(100 %id)
DN601791 human embryonic stem cells .c 1397 to 2128 1 to 732       732/732
(100 %)
0 diff
(100 %id)
CD653499 Embryonic Stem cells .c 1398 to 2166 13 to 780       768/818
(93 %)
12 diff
(98.6 %id)
CN354323 embryonic stem cells, cell lines H1, H7, andH9 .c 1413 to 2063 1 to 651       651/651
(100 %)
0 diff
(100 %id)
CN354366 embryonic stem cells, cell lines H1, H7, andH9 .c 1472 to 2166 1 to 693       693/693
(100 %)
9 diff
(98.8 %id)
CD654409 Embryonic Stem cells .c 1472 to 2255 8 to 786       779/808
(96 %)
18 diff
(97.8 %id)
TI_1105485206   .c 1478 to 1901 424 to 1       424/424
(100 %)
0 diff
(100 %id)
CN354330 embryonic stem cells, cell lines H1, H7, andH9 .c 1481 to 2214 1 to 734       734/734
(100 %)
2 diff
(99.8 %id)
TI_1286644860   .c 1512 to 2154 1 to 642       642/643
(99 %)
7 diff
(99.0 %id)
CV808666 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1520 to 2257 1 to 735       735/878
(83 %)
6 diff
(99.4 %id)
CR609754 fetal brain .c 1532 to 4074 1 to 2543   tiling clone,   2543/2543
(100 %)
0 diff
(100 %id)
AL535032 brain, fetal brain .c 1532 to 2666 1 to 1129       1129/1134
(99 %)
18 diff
(98.5 %id)
TI_1286644859   .c 1552 to 2121 11 to 581       571/581
(98 %)
6 diff
(99.0 %id)
BE278796 choriocarcinoma, placenta .c 1560 to 2102 1 to 549       547/550
(99 %)
14 diff
(97.5 %id)
TI_1132750818   .c 1562 to 1996 435 to 1       435/435
(100 %)
0 diff
(100 %id)
TI_1132750816   .c 1578 to 1901 324 to 1       324/324
(100 %)
0 diff
(100 %id)
BU859019 ovary, teratocarcinoma, cell line .c 1581 to 2397 1 to 826       826/902
(91 %)
13 diff
(98.6 %id)
BI087687 cervix .c 1590 to 2348 1 to 762       760/766
(99 %)
19 diff
(97.6 %id)
CN354333 embryonic stem cells, cell lines H1, H7, andH9 .c 1631 to 2313 1 to 683       683/684
(99 %)
3 diff
(99.6 %id)
TI_1286644839   .c 1635 to 2267 638 to 6       639/688
(92 %)
7 diff
(99.0 %id)
CN354316 embryonic stem cells, cell lines H1, H7, andH9 .c 1730 to 2406 24 to 700       677/700
(96 %)
7 diff
(99.0 %id)
TI_1105485189   .c 1731 to 1924 194 to 1       194/194
(100 %)
0 diff
(100 %id)
CN354361 embryonic stem cells, cell lines H1, H7, andH9 .c 1732 to 2397 1 to 666       666/666
(100 %)
2 diff
(99.7 %id)
TI_1286644840   .c 1785 to 2460 685 to 13       673/686
(98 %)
4 diff
(99.5 %id)
BF820890 kidney_tumor .c 1791 to 2177 1 to 387       387/387
(100 %)
1 diff
(99.8 %id)
TI_1286644844   .c 1822 to 2346 549 to 20       530/549
(96 %)
23 diff
(95.9 %id)
BI259947 cervical carcinoma cell line, cervix .c 1839 to 2801 1 to 956       956/960
(99 %)
37 diff
(96.2 %id)
CN354315 embryonic stem cells, cell lines H1, H7, andH9 .c 1844 to 2358 1 to 516       516/516
(100 %)
4 diff
(99.3 %id)
TI_1105485219   .c 1899 to 2347 449 to 1       449/449
(100 %)
0 diff
(100 %id)
TI_1105485205   .c 1904 to 2335 432 to 1       432/432
(100 %)
0 diff
(100 %id)
TI_1132750824   .c 1942 to 2483 542 to 1       542/542
(100 %)
0 diff
(100 %id)
TI_1286644861   .c 1950 to 2116 1 to 166       166/166
(100 %)
8 diff
(95.2 %id)
TI_1286644864   .c 1957 to 2409 13 to 464       452/517
(87 %)
14 diff
(97.3 %id)
AL120820 melanoma (MeWo cell line) .c 1990 to 2822 1 to 831       831/831
(100 %)
3 diff
(99.7 %id)
TI_1132750815   .c 2005 to 2318 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AA216697 brain, neuroepithelial cells .c 2011 to 2459 1 to 449       449/449
(100 %)
7 diff
(98.5 %id)
CV414037 marrow .c 2020 to 2257 1 to 242       242/262
(92 %)
23 diff
(91.3 %id)
AI114879 Liver .c 2069 to 2671 1 to 603       603/603
(100 %)
0 diff
(100 %id)
TI_1105485218   .c 2100 to 2300 201 to 1       201/201
(100 %)
0 diff
(100 %id)
TI_1132750817   .c 2116 to 2290 175 to 1       175/175
(100 %)
0 diff
(100 %id)
CN354344 embryonic stem cells, cell lines H1, H7, andH9 .c 2141 to 2498 1 to 357       357/357
(100 %)
1 diff
(99.8 %id)
AU125857   .c 2154 to 2912 2 to 762   capped   761/761
(100 %)
7 diff
(99.1 %id)
BE535370 cervix .c 2163 to 2867 1 to 703       703/965
(72 %)
9 diff
(99.1 %id)
F12227 brain, total brain .c 2167 to 2523 1 to 356       356/356
(100 %)
2 diff
(99.5 %id)
BX411256 brain, fetal brain .c 2260 to 3174 908 to 1       908/908
(100 %)
26 diff
(97.2 %id)
BM721736 eye, fetal eye .c 2328 to 2804 1 to 477       477/477
(100 %)
2 diff
(99.6 %id)
CN354329 embryonic stem cells, DMSO-treated H9 cellline .c 2405 to 3028 1 to 623       623/623
(100 %)
5 diff
(99.2 %id)
DB363429   .c 3163 to 3586 520 to 96       425/520
(81 %)
0 diff
(100 %id)
AA216527 brain, neuroepithelial cells .c 3548 to 4087 535 to 1       535/535
(100 %)
10 diff
(98.2 %id)
BM677321 eye, fetal eye .c 3605 to 4086 500 to 19   AAA   482/482
(100 %)
1 diff
(99.8 %id)
F09856 brain, total brain .c 3800 to 4086 287 to 1       287/287
(100 %)
1 diff
(99.7 %id)
AF176228   .d 1 to 4254 1 to 4254 exact tiling clone, AAA   4254/4254
(100 %)
1 diff
(100.0 %id)
NM_175850.1   .d 1 to 4254 1 to 4254 exact RefSeq, AAA   4254/4254
(100 %)
0 diff
(100 %id)
AK299915 brain .e 1 to 2662 1 to 2662 G553D tiling clone,   2662/2662
(100 %)
3 diff
(99.9 %id)
DC376763 brain .e 39 to 611 1 to 573       573/573
(100 %)
0 diff
(100 %id)
CN354340 embryonic stem cells, cell lines H1, H7, andH9 .e 2140 to 2606 1 to 467       467/467
(100 %)
2 diff
(99.6 %id)
BF344215 brain, glioblastoma with EGFR amplification .e 2265 to 2984 1 to 717       717/939
(76 %)
25 diff
(97.4 %id)
CX786035 human embryonic stem cells .e 2266 to 3039 1 to 774       774/774
(100 %)
0 diff
(100 %id)
CX786115 human embryonic stem cells .e 2266 to 3086 1 to 821       821/821
(100 %)
0 diff
(100 %id)
BI093297 cervix .e 2285 to 2983 1 to 698       698/698
(100 %)
7 diff
(99.0 %id)
CN354357 embryonic stem cells, cell lines H1, H7, andH9 .e 2295 to 2973 1 to 681       681/681
(100 %)
2 diff
(99.8 %id)
CX763038 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 2302 to 3058 25 to 773     Submitted on the opposite strand 749/776
(96 %)
16 diff
(98.0 %id)
CV812132 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 2307 to 3096 1 to 792       792/892
(88 %)
11 diff
(98.8 %id)
CX783326 human embryonic stem cells .e 2321 to 3143 1 to 823       823/823
(100 %)
1 diff
(99.9 %id)
CX755356 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 2369 to 3115 42 to 787     Submitted on the opposite strand 746/787
(94 %)
9 diff
(98.9 %id)
CU450847 epidermis .e 2379 to 2819 10 to 450       441/458
(96 %)
4 diff
(99.2 %id)
CN354317 embryonic stem cells, cell lines H1, H7, andH9 .e 2436 to 3131 1 to 695       695/695
(100 %)
5 diff
(99.3 %id)
BI093112 cervix .e 2566 to 3290 1 to 746       746/918
(81 %)
44 diff
(95.3 %id)
AL565748 brain, fetal brain .e 2576 to 3718 1144 to 8       1137/1200
(94 %)
0 diff
(100 %id)
CN354347 embryonic stem cells, DMSO-treated H9 cellline .e 2603 to 3214 1 to 612   tiling clone,   612/612
(100 %)
0 diff
(100 %id)
AW248100.
matches multiple genes
lung, small cell carcinoma .e 2658 to 3105 10 to 457     Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base), also hits gene TMEM120B 448/457
(98 %)
6 diff
(98.7 %id)
N48564 multiple sclerosis lesions .e 2758 to 3190 1 to 439       439/439
(100 %)
5 diff
(98.9 %id)
TI_57239173   .e 2858 to 3634 22 to 792       771/792
(97 %)
6 diff
(99.3 %id)
BI915158 brain .e 2869 to 3634 1 to 761       761/761
(100 %)
9 diff
(98.9 %id)
BM808310 amelanotic melanoma, cell line, skin .e 2945 to 3738 25 to 821   AAA   797/821
(97 %)
6 diff
(99.3 %id)
BG254147 adenocarcinoma, cell line, Prostate .e 2947 to 3604 1 to 661       661/950
(69 %)
15 diff
(98.5 %id)
BF093499 testis_normal .e 2964 to 3415 457 to 6       452/462
(97 %)
0 diff
(100 %id)
BE088566 breast .e 2978 to 3169 1 to 192       192/194
(98 %)
8 diff
(95.9 %id)
CA422706 cell lines, Chondrosarcoma .e 3020 to 3737 736 to 19   AAA   718/718
(100 %)
3 diff
(99.6 %id)
TI_154105332   .e 3022 to 3737 799 to 85   AAA   715/715
(100 %)
3 diff
(99.6 %id)
CN354362 embryonic stem cells, cell lines H1, H7, andH9 .e 3025 to 3737 1 to 712   tiling clone, AAA   712/712
(100 %)
6 diff
(99.2 %id)
CA446604 Chondrosarcoma, Left Pubic Bone .e 3043 to 3737 712 to 19   AAA   694/694
(100 %)
3 diff
(99.6 %id)
BF831942 head_neck .e 3091 to 3412 1 to 324       324/344
(94 %)
14 diff
(96.0 %id)
AW976616   .e 3165 to 3736 572 to 1     Submitted on the opposite strand 572/661
(86 %)
6 diff
(99.1 %id)
BE540459 cervix .e 3167 to 3732 1 to 565       565/565
(100 %)
5 diff
(99.2 %id)
BI090836 cervix .e 3198 to 3738 1 to 540   AAA   540/540
(100 %)
7 diff
(98.8 %id)
CN354350 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 3216 to 3737 1 to 522   AAA   522/522
(100 %)
0 diff
(100 %id)
AA599893 bone marrow stroma .e 3217 to 3735 517 to 1       517/517
(100 %)
7 diff
(98.7 %id)
CN354320 embryonic stem cells, cell lines H1, H7, andH9 .e 3236 to 3737 1 to 502   AAA   502/502
(100 %)
0 diff
(100 %id)
T66304 whole brain .e 3250 to 3722 491 to 1       491/491
(100 %)
25 diff
(95.0 %id)
AA923295 pooled germ cell tumors .e 3272 to 3741 469 to 1       469/469
(100 %)
3 diff
(99.4 %id)
AA887508 carcinoid, lung .e 3281 to 3677 1 to 396     Submitted on the opposite strand 396/396
(100 %)
2 diff
(99.5 %id)
AI936519 pooled .e 3281 to 3739 470 to 12   tiling clone, AAA   459/459
(100 %)
11 diff
(97.7 %id)
BE350353 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .e 3281 to 3741 461 to 2       460/461
(99 %)
0 diff
(100 %id)
AA729418 pooled germ cell tumors .e 3295 to 3736 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
BF088056 head_neck .e 3300 to 3608 12 to 320       309/320
(96 %)
6 diff
(98.2 %id)
AA206264   .e 3313 to 3461 1 to 158   fully sequenced,   158/158
(100 %)
0 diff
(100 %id)
BI092541 cervix .e 3317 to 3736 1 to 415   AAA   415/415
(100 %)
9 diff
(97.9 %id)
N39452 multiple sclerosis lesions .e 3334 to 3738 407 to 3       405/408
(99 %)
0 diff
(100 %id)
AI332472 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 3351 to 3741 391 to 1       391/391
(100 %)
1 diff
(99.8 %id)
AA565566 germ cell tumor .e 3356 to 3741 391 to 6       386/391
(98 %)
0 diff
(100 %id)
AA748883 germinal center B cell .e 3413 to 3690 277 to 1       277/277
(100 %)
2 diff
(99.3 %id)
BQ222535 leiomyosarcoma, uterus .e 3413 to 3738 1 to 326       326/1495
(21 %)
1 diff
(100.0 %id)
L32168 carcinoma .e 3420 to 3728 1 to 309       309/317
(97 %)
6 diff
(98.2 %id)
AA206103   .e 3431 to 3739 317 to 1   fully sequenced,   317/317
(100 %)
4 diff
(98.8 %id)
AA736583 germinal center B cell .e 3481 to 3690 209 to 1       209/209
(100 %)
1 diff
(99.6 %id)
AI868776 pooled .e 3487 to 3738 254 to 3       252/254
(99 %)
0 diff
(100 %id)
AI000396 pooled germ cell tumors .e 3531 to 3736 206 to 1       206/206
(100 %)
6 diff
(97.1 %id)
EC455264 Prostate .e 3643 to 3734 91 to 1       91/102
(89 %)
1 diff
(99.1 %id)
AK299821 brain .f 1 to 2314 2 to 2315 I479T S559P tiling clone,   2315/2315
(100 %)
6 diff
(99.8 %id)
DA801906 brain .f 1 to 474 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
AB208880 brain .g 1 to 4271 40 to 4309 exact tiling clone,   4270/4309
(99 %)
11 diff
(99.8 %id)
AK001191   .h 1 to 3017 2 to 3017 D283G tiling clone, available from FLJ,   3017/3017
(100 %)
8 diff
(99.8 %id)
DQ321787   .i 1 to 4369 1 to 4369 exact tiling clone,   4369/4369
(100 %)
0 diff
(100 %id)
DR002979 fetal brain .j 1 to 540 1 to 543   tiling clone,   543/543
(100 %)
11 diff
(98.0 %id)
AK300857 small intestine .j 13 to 1554 1 to 1543   tiling clone,   1543/1543
(100 %)
3 diff
(99.9 %id)
DC387693 small intestine .j 13 to 581 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
DC377814 brain .j 25 to 593 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DC325360 brain .j 35 to 633 1 to 599       599/599
(100 %)
0 diff
(100 %id)
CN413188 embryonic stem cells, cell lines H1, H7, andH9 .j 1082 to 1747 1 to 666       666/666
(100 %)
1 diff
(99.9 %id)
CX787344 human embryonic stem cells .j 1391 to 2100 1 to 710   tiling clone,   710/710
(100 %)
1 diff
(99.9 %id)
AK295176 brain .k 1 to 1709 1 to 1709 L309P tiling clone,   1709/1709
(100 %)
4 diff
(99.8 %id)
AF129268 testis .k 1641 to 3679 1 to 2039   tiling clone, AAA   2039/2039
(100 %)
0 diff
(100 %id)
BM834719 stomach .k 1653 to 2093 1 to 441       441/441
(100 %)
0 diff
(100 %id)
AK299776 brain .l 1 to 1512 1 to 1512 exact tiling clone,   1512/1512
(100 %)
0 diff
(100 %id)
CD653127 Embryonic Stem cells .l 1382 to 2164 1 to 770   tiling clone,   770/830
(92 %)
25 diff
(97.0 %id)
CD643566 Embryonic Stem cells .m 1 to 812 12 to 817 D108G Q239X E241X E251S Y252I ... tiling clone,   806/842
(95 %)
17 diff
(98.0 %id)
CN354364 embryonic stem cells, cell lines H1, H7, andH9 .n 1 to 708 1 to 708 exact tiling clone,   708/708
(100 %)
1 diff
(99.9 %id)
CN354334 embryonic stem cells, cell lines H1, H7, andH9 .n 3 to 614 1 to 611       611/611
(100 %)
3 diff
(99.6 %id)
CN354319 embryonic stem cells, cell lines H1, H7, andH9 .o 1 to 694 1 to 695 G144R I145D A146R S147F S149E ... tiling clone,   695/695
(100 %)
3 diff
(99.6 %id)
AF129269 testis .p 1 to 1990 1 to 1990 exact tiling clone, AAA   1990/1990
(100 %)
0 diff
(100 %id)
DR157112 human embryonic stem cells differentiated toan early endodermal cell type .q 1 to 722 1 to 722   tiling clone,   722/722
(100 %)
0 diff
(100 %id)
CD654343 Embryonic Stem cells .q 265 to 1074 12 to 814   tiling clone,   803/817
(98 %)
22 diff
(97.4 %id)
DA100242 cerebellum .r-u 1 to 546 2 to 547 V23A C48* tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DR159117 human embryonic stem cells differentiated toan early endodermal cell type .s 1 to 808 1 to 808   tiling clone,   808/808
(100 %)
0 diff
(100 %id)
BF955687 nervous_normal .s 51 to 284 315 to 83       233/315
(73 %)
8 diff
(97.5 %id)
CN354354 embryonic stem cells, cell lines H1, H7, andH9 .s 585 to 1285 1 to 700 R109K tiling clone,   700/700
(100 %)
3 diff
(99.6 %id)
CN354318 embryonic stem cells, cell lines H1, H7, andH9 .t 1 to 588 1 to 587 exact tiling clone,   587/587
(100 %)
2 diff
(99.7 %id)
DA782536 brain .u 1 to 579 2 to 581   tiling clone, capped   580/580
(100 %)
2 diff
(99.7 %id)
CR741360 ovarian tumor, ovary .u 369 to 1095 1 to 728 exact     728/728
(100 %)
2 diff
(99.8 %id)
AA477705 ovarian tumor, ovary .u 369 to 941 1 to 573   tiling clone,   573/573
(100 %)
1 diff
(99.9 %id)
CX782047 human embryonic stem cells .u 479 to 1325 1 to 845 exact tiling clone,   845/845
(100 %)
3 diff
(99.7 %id)
AA477706 ovarian tumor, ovary .u 1948 to 2507 559 to 1   tiling clone,   559/559
(100 %)
2 diff
(99.7 %id)
DB326319 brain .u 1962 to 2507 546 to 1   tiling clone,   546/546
(100 %)
3 diff
(99.5 %id)
BX510268   .va-u 1 to 421 1 to 421   tiling clone,   421/421
(100 %)
2 diff
(99.6 %id)
CD654341 Embryonic Stem cells .va-u 63 to 879 12 to 818   tiling clone,   807/838
(96 %)
17 diff
(98.0 %id)
DA799412 brain .va-u 140 to 669 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
BM474850 duodenal adenocarcinoma, cell line, small intestine .va-u 287 to 1058 1 to 780   tiling clone,   780/999
(78 %)
25 diff
(97.5 %id)
DA807263 brain .va-u 954 to 1502 2 to 550   tiling clone, to resequence, capped   549/549
(100 %)
2 diff
(99.7 %id)
CD656928 Embryonic Stem cells .va-u 2224 to 3054 56 to 883   tiling clone,   828/889
(93 %)
6 diff
(99.4 %id)
CN286153 embryonic stem cells, cell lines H1, H7, andH9 .va-u 2257 to 2758 1 to 502       502/502
(100 %)
0 diff
(100 %id)
CX754395 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .va-u 2521 to 3279 1 to 748   tiling clone, Submitted on the opposite strand 748/823
(90 %)
16 diff
(98.1 %id)
BQ269096 Pancreas, Purified pancreatic islet .va-u 2625 to 3141 11 to 527       517/527
(98 %)
6 diff
(98.9 %id)
CK825649 Pancreas, Purified pancreatic islet .va-u 2658 to 3226 1 to 569   tiling clone, Submitted on the opposite strand 569/569
(100 %)
0 diff
(100 %id)
DB327221 brain .va-u 4041 to 4570 529 to 1 L28X tiling clone, to resequence,   529/529
(100 %)
1 diff
(99.9 %id)
BE552061 pooled germ cell tumors .vb-u 1 to 408 1 to 407   tiling clone, Submitted on the opposite strand 407/407
(100 %)
2 diff
(99.6 %id)
CV315507 epid_tumor .vb-u 123 to 250 131 to 2     Submitted on the opposite strand 130/137
(94 %)
0 diff
(100 %id)
CN278783 embryonic stem cells, cell lines H1, H7, andH9 .vb-u 173 to 801 13 to 641   tiling clone,   629/641
(98 %)
6 diff
(99.1 %id)
DW420109 Liver .vb-u 275 to 560 301 to 16       286/301
(95 %)
0 diff
(100 %id)
DW434537 Liver .vb-u 318 to 560 258 to 16       243/258
(94 %)
0 diff
(100 %id)
CN278784 embryonic stem cells, cell lines H1, H7, andH9 .vb-u 613 to 1115 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
CD654029 Embryonic Stem cells .vb-u 702 to 1460 42 to 788 L31P S50X P52H S53L F54S ... tiling clone,   747/838
(89 %)
6 diff
(99.3 %id)
CD653426 Embryonic Stem cells .vb-u 820 to 1570 13 to 760 L31P tiling clone,   748/859
(87 %)
11 diff
(98.8 %id)
CN412202 embryonic stem cells, cell lines H1, H7, andH9 .vb-u 1131 to 1766 1 to 636 L31P S34F tiling clone,   636/636
(100 %)
2 diff
(99.7 %id)
CX757180 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .vc-u 1 to 789 1 to 780 C26A L27Y Y28T Y29I L31* tiling clone, Submitted on the opposite strand 780/819
(95 %)
15 diff
(98.2 %id)
CD655175 Embryonic Stem cells .vc-u 6 to 798 53 to 838 exact tiling clone,   786/883
(89 %)
6 diff
(99.4 %id)
DA072487 cerebellum .vc-u 230 to 798 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BQ229295 melanotic melanoma, skin Gene DNMT3B, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r-u, .s, .t, .u, .va-u, .vb-u, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI