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Gene SVOPTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
142 supporting clones for gene SVOP back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA192219 amygdala .a 1 to 375 205 to 579   capped   375/578
(64 %)
5 diff
(99.2 %id)
DA206909 brain .a 1 to 314 264 to 577   capped   314/576
(54 %)
6 diff
(99.0 %id)
DA210754 brain .a 1 to 291 269 to 559   capped   291/558
(52 %)
5 diff
(99.2 %id)
DA223999 brain .a 1 to 311 237 to 547   capped   311/546
(56 %)
5 diff
(99.1 %id)
DA228202 brain .a 1 to 333 237 to 569   capped   333/568
(58 %)
6 diff
(99.0 %id)
DA235713 brain .a 1 to 300 300 to 599   capped   300/598
(50 %)
5 diff
(99.2 %id)
DA239909 brain .a 1 to 305 281 to 585   capped   305/584
(52 %)
5 diff
(99.2 %id)
DA248152 brain .a 1 to 369 215 to 582   capped   368/581
(63 %)
6 diff
(99.0 %id)
DA299729 hippocampus .a 1 to 291 277 to 567   capped   291/566
(51 %)
5 diff
(99.2 %id)
DA311317 hippocampus .a 1 to 302 270 to 571   capped   302/570
(52 %)
5 diff
(99.2 %id)
DA348895 substantia nigra .a 1 to 349 231 to 579   capped   349/578
(60 %)
5 diff
(99.2 %id)
DA398194 thalamus .a 1 to 333 238 to 570   capped   333/569
(58 %)
5 diff
(99.2 %id)
DA409978 thalamus .a 1 to 296 269 to 564   capped   296/563
(52 %)
5 diff
(99.2 %id)
DA413954 thalamus .a 1 to 351 209 to 559   capped   351/558
(62 %)
5 diff
(99.2 %id)
DA414350 thalamus .a 1 to 316 247 to 562   capped   316/561
(56 %)
5 diff
(99.2 %id)
DA721822   .a 1 to 294 270 to 563   capped   294/562
(52 %)
5 diff
(99.2 %id)
BX954612   .a 3 to 384 321 to 702   tiling clone,   382/702
(54 %)
7 diff
(99.1 %id)
BC033587 Brain, fetal, whole pooled .a 9 to 3109 368 to 3468   tiling clone, available from MGC, AAA   3101/3468
(89 %)
9 diff
(99.8 %id)
BC094722 Brain, hippocampus .a 9 to 3109 215 to 3314   tiling clone, AAA   3100/3314
(93 %)
8 diff
(99.8 %id)
DA111832 cerebellum .a 9 to 367 230 to 588   capped   359/587
(61 %)
6 diff
(99.0 %id)
DA113383 cerebellum .a 9 to 371 229 to 591   capped   363/590
(61 %)
6 diff
(99.0 %id)
DA115247 cerebellum .a 9 to 316 263 to 570   capped   308/569
(54 %)
6 diff
(99.0 %id)
DA123193 cerebellum .a 9 to 312 245 to 548   capped   304/547
(55 %)
6 diff
(99.0 %id)
DA127640 cerebellum .a 9 to 379 229 to 599   capped   371/598
(62 %)
7 diff
(98.9 %id)
DA143871 amygdala .a 9 to 303 282 to 576   capped   295/575
(51 %)
9 diff
(98.5 %id)
DA160160 amygdala .a 9 to 384 186 to 561   capped   376/560
(67 %)
6 diff
(99.0 %id)
DA171323 amygdala .a 9 to 300 263 to 554   capped   292/553
(52 %)
6 diff
(99.0 %id)
DA188051 amygdala .a 9 to 324 217 to 532   capped   316/531
(59 %)
6 diff
(98.9 %id)
DA188222 amygdala .a 9 to 338 190 to 519   capped   330/518
(63 %)
6 diff
(98.9 %id)
DA189755 amygdala .a 9 to 355 245 to 591   capped   347/590
(58 %)
6 diff
(99.0 %id)
DA189762 amygdala .a 9 to 358 240 to 589   capped   350/588
(59 %)
8 diff
(98.7 %id)
DA191126 amygdala .a 9 to 382 216 to 589   capped   374/588
(63 %)
6 diff
(99.0 %id)
DA193028 amygdala .a 9 to 320 286 to 597   capped   312/596
(52 %)
6 diff
(99.0 %id)
DA196437 amygdala .a 9 to 296 278 to 565   capped   288/564
(51 %)
7 diff
(98.8 %id)
DA212816 brain .a 9 to 290 278 to 559   capped   282/558
(50 %)
7 diff
(98.8 %id)
DA214815 brain .a 9 to 299 253 to 543   capped   291/542
(53 %)
6 diff
(98.9 %id)
DA230570 brain .a 9 to 323 335 to 649   capped   315/648
(48 %)
6 diff
(99.1 %id)
DA236383 brain .a 9 to 302 283 to 576   capped   294/575
(51 %)
7 diff
(98.8 %id)
DA242913 brain .a 9 to 373 218 to 582   capped   365/581
(62 %)
6 diff
(99.0 %id)
DA289822 hippocampus .a 9 to 400 159 to 550   capped   392/549
(71 %)
7 diff
(98.8 %id)
DA295798 hippocampus .a 9 to 302 276 to 569   capped   294/568
(51 %)
6 diff
(99.0 %id)
DA296188 hippocampus .a 9 to 305 278 to 574   capped   297/573
(51 %)
6 diff
(99.0 %id)
DA320990 hippocampus .a 9 to 304 289 to 584   capped   296/583
(50 %)
6 diff
(99.0 %id)
DA340660 hippocampus .a 9 to 315 277 to 583   capped   307/582
(52 %)
6 diff
(99.0 %id)
DA401698 thalamus .a 9 to 345 217 to 553   capped   337/552
(61 %)
6 diff
(99.0 %id)
DA410017 thalamus .a 9 to 363 216 to 570   capped   355/569
(62 %)
6 diff
(99.0 %id)
F08438 brain, total brain .a 9 to 150 117 to 258       142/258
(55 %)
6 diff
(97.7 %id)
BX354245 Neuroblastoma Cot 25-normalized .a 9 to 596 348 to 934       587/960
(61 %)
16 diff
(98.4 %id)
CV030428 mixed .a 9 to 394 196 to 581       386/581
(66 %)
6 diff
(99.0 %id)
DA528571 brain .a 9 to 310 308 to 609   capped   302/608
(49 %)
6 diff
(99.1 %id)
DB476139 hippocampus .a 9 to 281 212 to 484       273/484
(56 %)
7 diff
(98.6 %id)
DB476334 hippocampus .a 9 to 267 212 to 470       259/479
(54 %)
7 diff
(98.6 %id)
BG703339 brain, hippocampus .a 9 to 423 220 to 638       419/638
(65 %)
17 diff
(97.4 %id)
NM_018711.2   .a 9 to 3113 368 to 3472   RefSeq, AAA   3105/3472
(89 %)
6 diff
(99.9 %id)
DA774858 brain .a 9 to 388 115 to 495   capped   381/494
(77 %)
6 diff
(98.8 %id)
DA807246 brain .a 9 to 254 247 to 492   capped   246/491
(50 %)
6 diff
(98.8 %id)
TI_1948137090   .a 9 to 580 324 to 897       574/1365
(42 %)
13 diff
(99.1 %id)
TI_1948137091   .a 9 to 531 326 to 856       529/1400
(37 %)
24 diff
(98.3 %id)
TI_1948137429   .a 9 to 582 321 to 894       574/1287
(44 %)
21 diff
(98.4 %id)
TI_1948137774   .a 9 to 569 330 to 890       561/1371
(40 %)
34 diff
(97.6 %id)
TI_1948137775   .a 9 to 537 327 to 863       537/1380
(38 %)
36 diff
(97.4 %id)
TI_1948138123   .a 9 to 786 322 to 1104       782/1386
(56 %)
57 diff
(95.9 %id)
TI_1948138124   .a 9 to 457 319 to 767       449/1380
(32 %)
9 diff
(99.4 %id)
DN989952 brain, whole brain .a 9 to 418 279 to 688       410/692
(59 %)
9 diff
(98.7 %id)
DB174628 kidney, tumor tissue .a 9 to 349 229 to 569   capped   341/568
(60 %)
6 diff
(99.0 %id)
DB503132 hypothalamus .a 10 to 257 219 to 466       248/466
(53 %)
7 diff
(98.5 %id)
DA721140   .a 10 to 390 191 to 571   capped   381/570
(66 %)
6 diff
(99.0 %id)
DA248990 brain .a 112 to 302 399 to 590   capped   192/589
(32 %)
7 diff
(98.9 %id)
DA209849 brain .a 118 to 667 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA348639 substantia nigra .a 202 to 770 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA690396   .a 226 to 786 2 to 563   capped   562/567
(99 %)
3 diff
(99.5 %id)
DA081716 cerebellum .a 309 to 838 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA309695 hippocampus .a 334 to 926 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA776913 brain .a 435 to 1007 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA715662   .a 440 to 999 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AL523335.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 582 to 1581 998 to 1     also hits gene roswoy 998/998
(100 %)
14 diff
(98.6 %id)
BX391607 Neuroblastoma Cot 50-normalized .a 582 to 972 389 to 1       389/389
(100 %)
2 diff
(99.5 %id)
BX329006 Neuroblastoma Cot 50-normalized .a 582 to 972 392 to 1       392/392
(100 %)
1 diff
(99.8 %id)
BX369064 Neuroblastoma Cot 50-normalized .a 582 to 1164 1 to 584       584/666
(87 %)
9 diff
(98.7 %id)
BX354244 Neuroblastoma Cot 25-normalized .a 588 to 1546 959 to 5       955/959
(99 %)
10 diff
(99.0 %id)
BX953175   .a 589 to 1250 1 to 662       662/662
(100 %)
0 diff
(100 %id)
DA150575 amygdala .a 602 to 1181 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
TI_1948138126   .a 612 to 1459 969 to 129       841/1316
(63 %)
21 diff
(98.5 %id)
TI_1948137092   .a 640 to 1459 950 to 124       827/1203
(68 %)
13 diff
(99.0 %id)
TI_1948137093   .a 652 to 1459 937 to 129       807/1359
(59 %)
9 diff
(99.4 %id)
TI_1948137776   .a 697 to 1459 894 to 124       769/1165
(66 %)
21 diff
(98.2 %id)
DA776989 brain .a 698 to 1267 2 to 572   capped   571/571
(100 %)
5 diff
(99.2 %id)
AK309780 brain .a 700 to 2232 4 to 1536       1533/1536
(99 %)
3 diff
(99.9 %id)
TI_1948137430   .a 704 to 1459 886 to 123       762/1217
(62 %)
14 diff
(98.9 %id)
TI_1948138125   .a 784 to 1459 800 to 123       678/1203
(56 %)
4 diff
(99.7 %id)
TI_1948137777   .a 786 to 1459 817 to 135       683/1472
(46 %)
14 diff
(99.1 %id)
AA349847 brain .a 798 to 1165 1 to 368       368/371
(99 %)
3 diff
(99.2 %id)
TI_1948137431   .a 864 to 1459 735 to 137       599/1409
(42 %)
15 diff
(99.0 %id)
CK024167 brain/CNS, Human Brain - Frontal Cortex .a 949 to 1581 1 to 631       631/637
(99 %)
34 diff
(94.7 %id)
AW173250 pooled .a 969 to 1455 487 to 1       487/487
(100 %)
13 diff
(97.4 %id)
DA510466 brain .a 996 to 1561 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA255565 caudate nucleus .a 997 to 1490 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
AW663941 pooled .a 1006 to 1577 578 to 6       573/578
(99 %)
2 diff
(99.7 %id)
AL359592 amygdala .a 1024 to 3113 1 to 2090   tiling clone, available from DKFZ, AAA   2090/2090
(100 %)
3 diff
(99.9 %id)
DA092254 cerebellum .a 1040 to 1623 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA160398 amygdala .a 1056 to 1631 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA164293 amygdala .a 1071 to 1620 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA907901   .a 1090 to 1815 2 to 729   capped   728/728
(100 %)
4 diff
(99.5 %id)
DA256345 caudate nucleus .a 1124 to 1700 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA688344   .a 1152 to 1691 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AW965645   .a 1170 to 1685 21 to 536       516/536
(96 %)
8 diff
(98.6 %id)
AA350545 brain .a 1176 to 1556 17 to 400       384/402
(95 %)
13 diff
(96.8 %id)
T10079   .a 1181 to 1463 16 to 299       284/299
(94 %)
17 diff
(94.4 %id)
AI372624   .a 1227 to 1572 11 to 355       345/355
(97 %)
5 diff
(98.6 %id)
T08271   .a 1228 to 1593 1 to 366       366/366
(100 %)
2 diff
(99.5 %id)
DA057691 cerebellum .a 1253 to 1731 2 to 480   capped   479/479
(100 %)
1 diff
(99.8 %id)
BG056004 anaplastic oligodendroglioma, brain .a 1309 to 1601 308 to 16   AAA   293/293
(100 %)
3 diff
(99.0 %id)
AW957713   .a 1512 to 2096 11 to 596       586/596
(98 %)
6 diff
(99.0 %id)
AA351693 brain .a 1518 to 1783 1 to 266       266/266
(100 %)
1 diff
(99.7 %id)
DA149121 amygdala .a 1689 to 2199 2 to 514   capped   513/513
(100 %)
3 diff
(99.5 %id)
BG820031 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1935 to 2422 1 to 487       487/489
(99 %)
6 diff
(98.8 %id)
BP323150 Pancreas .a 2082 to 2660 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
AI372625   .a 2460 to 2873 414 to 1       414/414
(100 %)
3 diff
(99.3 %id)
BF956780 nervous_normal .a 2467 to 2587 127 to 17       481/524
(91 %)
5 diff
(99.1 %id)
DB331359   .a 2552 to 3113 562 to 1       562/562
(100 %)
2 diff
(99.7 %id)
DB304340 brain .a 2577 to 3113 537 to 1       537/537
(100 %)
3 diff
(99.5 %id)
DB324843   .a 2590 to 3117 528 to 1       528/528
(100 %)
1 diff
(99.9 %id)
DB544950 hippocampus .a 2613 to 3109 1 to 497     Submitted on the opposite strand 497/497
(100 %)
1 diff
(99.8 %id)
BX281815 carcinoid, lung .a 2615 to 2968 1 to 354       354/356
(99 %)
1 diff
(99.8 %id)
DB545321 hippocampus .a 2617 to 3113 1 to 497     Submitted on the opposite strand 497/499
(99 %)
4 diff
(99.2 %id)
DB550114 hippocampus .a 2630 to 3109 1 to 480     Submitted on the opposite strand 480/480
(100 %)
0 diff
(100 %id)
BM725446 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2639 to 3113 1 to 475   AAA   475/475
(100 %)
1 diff
(99.8 %id)
AI457841 carcinoid, lung .a 2648 to 3112 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
AW341223 carcinoid, lung .a 2651 to 3103 464 to 12       453/464
(97 %)
0 diff
(100 %id)
DB574345 hypothalamus .a 2657 to 3111 1 to 455     Submitted on the opposite strand 455/457
(99 %)
2 diff
(99.6 %id)
DB545095 hippocampus .a 2659 to 3109 1 to 451     Submitted on the opposite strand 451/451
(100 %)
0 diff
(100 %id)
DB567430.
matches multiple genes
hypothalamus .a 2664 to 3113 1 to 450     Submitted on the opposite strand, also hits gene roswoy 450/450
(100 %)
1 diff
(99.8 %id)
BP396855 pancreatic islet .a 2699 to 3116 1 to 418     Submitted on the opposite strand 418/420
(99 %)
3 diff
(99.3 %id)
AA349846 brain .a 2726 to 3113 388 to 1       388/391
(99 %)
3 diff
(99.3 %id)
AI372623   .a 2783 to 3113 336 to 1       336/338
(99 %)
10 diff
(97.1 %id)
BE467440 carcinoid, lung .a 2790 to 3116 333 to 6       328/333
(98 %)
0 diff
(100 %id)
AA350030 brain .a 2802 to 3113 312 to 1       312/312
(100 %)
1 diff
(99.7 %id)
AA350544 brain .a 2802 to 3106 305 to 1       305/305
(100 %)
3 diff
(99.1 %id)
AA350543 brain .a 2844 to 3106 263 to 1       263/263
(100 %)
1 diff
(99.7 %id)
DB545955 hippocampus .a 2848 to 3107 19 to 279     Submitted on the opposite strand 261/279
(93 %)
6 diff
(97.9 %id)
T10078   .a 2871 to 3116 248 to 1       248/249
(99 %)
8 diff
(96.8 %id)
T15447   .a 2883 to 3107 225 to 1       225/225
(100 %)
1 diff
(99.6 %id)
T15785   .a 2905 to 3110 214 to 5       210/221
(95 %)
0 diff
(100 %id)
T08675   .b 1 to 439 1 to 441 exact tiling clone,   441/441
(100 %)
7 diff
(98.5 %id)
BP193874 brain Gene SVOP, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C