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Gene FAM200ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene FAM200A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA779556 brain .a 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
TI_1607546355   .a 373 to 1459 1087 to 13       1075/1292
(83 %)
0 diff
(100 %id)
DA728540   .a 401 to 1271 2 to 889   capped   888/891
(99 %)
23 diff
(97.5 %id)
CV030344 mixed .a 437 to 1136 1 to 700       700/702
(99 %)
7 diff
(99.1 %id)
TI_1948138622   .a 437 to 1095 128 to 791       664/1335
(49 %)
17 diff
(98.8 %id)
TI_1948138623   .a 437 to 1525 127 to 1203       1077/1370
(78 %)
0 diff
(100 %id)
TI_1948139236   .a 437 to 1081 126 to 776       651/1354
(48 %)
0 diff
(100 %id)
TI_1948139237   .a 437 to 1365 127 to 1055   tiling clone,   929/1405
(66 %)
18 diff
(98.8 %id)
BG106637 lymph, lymphoma, cell line .a 466 to 1154 1 to 696       696/888
(78 %)
28 diff
(96.9 %id)
BG165969 hypernephroma, cell line, Kidney .a 488 to 1207 1 to 719       719/719
(100 %)
12 diff
(98.4 %id)
TI_1520874371   .a 1070 to 2224 1224 to 59     Submitted on the opposite strand 1166/1275
(91 %)
0 diff
(100 %id)
CF130313 Chondrosarcoma Lung Metastasis cell lines, lung .a 1081 to 1717 1 to 637       637/637
(100 %)
0 diff
(100 %id)
TI_154192268   .a 1081 to 1718 51 to 688   tiling clone,   638/642
(99 %)
1 diff
(99.9 %id)
BQ328546 leiomios .a 1083 to 1573 12 to 501       490/501
(97 %)
0 diff
(100 %id)
TI_1607544587   .a 1085 to 2225 1202 to 68       1135/1284
(88 %)
0 diff
(100 %id)
AI610989 Prostate .a 1089 to 1324 236 to 1       236/236
(100 %)
0 diff
(100 %id)
AI669858 Prostate .a 1090 to 1336 247 to 1       247/247
(100 %)
2 diff
(99.2 %id)
BE856146 Prostate .a 1091 to 1324 234 to 1       234/234
(100 %)
0 diff
(100 %id)
BX100666 whole brain .a 1124 to 1668 1 to 541       541/541
(100 %)
4 diff
(99.3 %id)
H05576 whole brain .a 1125 to 1598 1 to 484       484/499
(96 %)
20 diff
(96.0 %id)
TI_1948138624   .a 1159 to 2155 1130 to 125       1006/1218
(82 %)
0 diff
(100 %id)
AW837605 leiomios .a 1163 to 1442 39 to 318       280/318
(88 %)
0 diff
(100 %id)
TI_1520873099   .a 1237 to 2224 12 to 997       986/1256
(78 %)
7 diff
(99.5 %id)
BG105726 adrenal cortex carcinoma, cell line, adrenal gland .a 1274 to 2013 1 to 739       739/919
(80 %)
12 diff
(98.7 %id)
AA452899   .a 1295 to 1718 433 to 10   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 424/433
(97 %)
0 diff
(100 %id)
DB507451 testis .a 1315 to 1715 1 to 401     Submitted on the opposite strand 401/403
(99 %)
1 diff
(99.8 %id)
TI_159697087   .a 1332 to 2265 58 to 977     Submitted on the opposite strand 920/1078
(85 %)
0 diff
(100 %id)
TI_1948139238   .a 1347 to 2155 950 to 126       825/1285
(64 %)
0 diff
(100 %id)
TI_1948138625   .a 1388 to 2155 899 to 130       770/1419
(54 %)
0 diff
(100 %id)
TI_1948139239   .a 1544 to 2155 758 to 141       618/1422
(43 %)
0 diff
(100 %id)
AI093829 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1555 to 2043 484 to 1       484/484
(100 %)
5 diff
(99.0 %id)
BQ330180 lung_tumor .a 1580 to 1810 232 to 1       232/238
(97 %)
13 diff
(94.6 %id)
BY994962   .a 1675 to 2356 25 to 706   tiling clone,   682/706
(96 %)
0 diff
(100 %id)
DB507950 testis .a 1813 to 2220 1 to 408     Submitted on the opposite strand 408/410
(99 %)
4 diff
(99.1 %id)
T53175 fetal spleen, Spleen .a 1900 to 2240 1 to 344       344/349
(98 %)
4 diff
(98.9 %id)
AI921395 adenocarcinoma, Pancreas .a 2035 to 2485 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
H05111 whole brain .a 2059 to 2465 416 to 1       416/419
(99 %)
17 diff
(96.0 %id)
AA830263 germinal center B cell .a 2187 to 2536 385 to 37   AAA   349/349
(100 %)
3 diff
(99.2 %id)
W39412 parathyroid gland, parathyroid tumor .a 2199 to 2544 13 to 356   tiling clone, fully sequenced,   344/356
(96 %)
5 diff
(98.6 %id)
W39602 parathyroid gland, parathyroid tumor .a 2199 to 2544 13 to 357   fully sequenced,   345/357
(96 %)
9 diff
(97.5 %id)
AA862413 Kidney .a 2203 to 2543 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
W15437 parathyroid gland, parathyroid tumor .a 2272 to 2550 279 to 1   tiling clone, fully sequenced,   279/279
(100 %)
5 diff
(98.3 %id)
W15300 parathyroid gland, parathyroid tumor .a 2277 to 2543 268 to 1   fully sequenced,   268/268
(100 %)
1 diff
(99.7 %id)
BX490532   .b 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
5 diff
(99.2 %id)
AK094113 adrenal gland .b 47 to 1945 1 to 1899   tiling clone, available from FLJ,   1899/1899
(100 %)
1 diff
(100.0 %id)
DA013557 adrenal gland .b 48 to 614 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BX490533   .b 1858 to 2443 602 to 18   tiling clone, AAA   585/585
(100 %)
4 diff
(99.4 %id)
DA443182 tongue, tumor tissue .c -10 to 544 9 to 564   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA046175 bladder .c -9 to 568 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA160898 amygdala .c -9 to 568 2 to 579   tiling clone, capped   578/580
(99 %)
1 diff
(99.9 %id)
DA479987   .c -9 to 552 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA483499 brain .c -9 to 475 2 to 486   capped   485/499
(97 %)
6 diff
(98.8 %id)
DA520735 brain .c -9 to 556 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA820631 pericardium .c -9 to 558 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB037913 testis .c -9 to 572 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DB121323 thymus .c -9 to 559 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB192389 ovary, tumor tissue .c -9 to 548 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA527088 brain .c 1 to 548 10 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA869253 Prostate .c 1 to 532 10 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB175501 kidney, tumor tissue .c 1 to 562 10 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB247891 uterus .c 1 to 478 10 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
DB266878 uterus .c 1 to 571 10 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA556638   .c 1 to 559 7 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA751360   .c 1 to 576 12 to 588   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA520662 brain .c 1 to 567 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CV569355 cornea, eye .c 11 to 622 1 to 612       612/612
(100 %)
0 diff
(100 %id)
CN360841 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 20 to 598 1 to 579       579/582
(99 %)
1 diff
(99.9 %id)
AK315452   .c 34 to 2071 1 to 2038 N202S     2038/2038
(100 %)
2 diff
(100.0 %id)
DA580906   .c 35 to 583 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB442588 testis .c 40 to 497 1 to 457       457/457
(100 %)
2 diff
(99.6 %id)
DA948002 Spleen .c 40 to 595 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB443016 testis .c 46 to 464 1 to 419       419/419
(100 %)
4 diff
(99.1 %id)
TI_57172616   .c 48 to 762 26 to 746       721/747
(96 %)
18 diff
(97.6 %id)
BC040214 Brain, adult medulla .c 53 to 2456 1 to 2404 exact tiling clone, available from MGC, AAA   2404/2404
(100 %)
0 diff
(100 %id)
BI828803 brain, medulla .c 53 to 762 1 to 716       716/717
(99 %)
23 diff
(96.8 %id)
DN997418 breast cancer, Mammary gland (cancer tissue) .c 91 to 746 1 to 656       656/656
(100 %)
4 diff
(99.4 %id)
BC126337 Brain, cerebellum, PCR rescued clones .c 108 to 2134 1 to 2027 exact     2027/2027
(100 %)
1 diff
(100.0 %id)
BC130371 Brain, cerebellum, PCR rescued clones .c 108 to 2137 1 to 2030 exact     2030/2030
(100 %)
0 diff
(100 %id)
BC009536 Lung, carcinoma, large cellundifferentiated. .c 193 to 1884 1 to 1692   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1692/1700
(99 %)
5 diff
(99.8 %id)
AA360717   .c 194 to 451 1 to 258       258/258
(100 %)
4 diff
(98.5 %id)
BE881410 large cell carcinoma, undifferentiated, lung .c 215 to 1029 1 to 806   available from MGC,   806/868
(92 %)
30 diff
(96.6 %id)
AK290724   .c 251 to 2449 282 to 2480 H125R E319G     2480/2480
(100 %)
3 diff
(99.9 %id)
DA087726 cerebellum .c 251 to 536 275 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA279984 corpus callosum .c 251 to 542 277 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA476520   .c 251 to 545 269 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB476932 hippocampus .c 251 to 495 273 to 517       517/517
(100 %)
2 diff
(99.7 %id)
DA552767   .c 251 to 540 266 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA560676 heart .c 251 to 562 266 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA596649   .c 251 to 516 282 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA619798   .c 251 to 552 275 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA655555   .c 251 to 560 267 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
NM_145111.3   .c 251 to 2456 282 to 2487 exact RefSeq, AAA   2487/2487
(100 %)
0 diff
(100 %id)
DA832696 placenta .c 251 to 696 272 to 721   capped   720/720
(100 %)
6 diff
(99.2 %id)
AL713672 breast cancer .c 257 to 2456 1 to 2200 exact available from DKFZ, AAA   2200/2200
(100 %)
1 diff
(100.0 %id)
DB319876   .c 1901 to 2456 556 to 1       556/556
(100 %)
2 diff
(99.7 %id)
DB379000 placenta .c 1918 to 2370 452 to 1       452/452
(100 %)
15 diff
(96.7 %id)
AK024526 adipose tissue .d 251 to 1371 266 to 1386 exact tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 1386/1386
(100 %)
3 diff
(99.8 %id)
DB030118 testis .e 1 to 564 2 to 565 exact tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
AI902830 breast .f-u 1 to 307 304 to 1 E5* tiling clone,   304/304
(100 %)
16 diff
(94.8 %id)
BX380275 Placenta Cot 25-normalized Gene FAM200A, variant not shown         This clone was ignored    
AI872886 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus Gene FAM200A, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C