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Gene CTTNBP2NLTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
317 supporting clones for gene CTTNBP2NL back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB086936 testis .a 1 to 563 2 to 565   tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
NM_018704.2   .a 149 to 6049 1 to 5901 exact RefSeq,   5901/5901
(100 %)
1 diff
(100.0 %id)
AL710144 human skeletal muscle .a 152 to 831 1 to 680   tiling clone,   680/680
(100 %)
2 diff
(99.8 %id)
DA855283 placenta .a 155 to 746 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
BX473068   .a 176 to 711 1 to 536       536/536
(100 %)
1 diff
(99.9 %id)
AK023340 ovary, tumor tissue .a 185 to 1785 1 to 1731   available from FLJ,   1412/1836
(76 %)
19 diff
(99.0 %id)
DA399682 thalamus .a 186 to 504 2 to 320   capped   319/319
(100 %)
0 diff
(100 %id)
DA455960 tongue, tumor tissue .a 186 to 748 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA457312 tongue, tumor tissue .a 186 to 768 2 to 586   capped   585/585
(100 %)
3 diff
(99.5 %id)
DA489989 brain .a 186 to 746 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA490808 brain .a 186 to 759 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA497494 brain .a 186 to 753 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA834426 placenta .a 186 to 1030 2 to 844   capped   843/843
(100 %)
8 diff
(99.1 %id)
DA859004 placenta .a 186 to 751 2 to 570   capped   569/570
(99 %)
5 diff
(99.2 %id)
DA992266 synovial membrane tissue from rheumatioidarthritis .a 186 to 730 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB227582 trachea .a 186 to 751 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DB265420 uterus .a 186 to 762 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BX957018   .a 188 to 594 1 to 407       407/407
(100 %)
1 diff
(99.8 %id)
BX496710 Liver .a 192 to 680 1 to 488       488/492
(99 %)
4 diff
(99.2 %id)
BX496711 Liver .a 192 to 412 1 to 221       221/221
(100 %)
3 diff
(98.7 %id)
AL598321   .a 193 to 893 1 to 701       701/701
(100 %)
2 diff
(99.8 %id)
DA450885 tongue, tumor tissue .a 195 to 757 2 to 566   capped   565/565
(100 %)
4 diff
(99.3 %id)
BP364132 lung .a 196 to 778 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA723429   .a 206 to 781 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BC016029 Skin, melanotic melanoma. .a 209 to 4476 1 to 4263 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 4263/4263
(100 %)
6 diff
(99.9 %id)
BX492221   .a 209 to 666 1 to 457       457/457
(100 %)
3 diff
(99.4 %id)
BX474189   .a 214 to 757 9 to 552       544/552
(98 %)
7 diff
(98.8 %id)
BE886751 leiomyosarcoma, uterus .a 214 to 905 1 to 692       692/954
(72 %)
9 diff
(99.1 %id)
BX950981   .a 215 to 759 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
DA235401 brain .a 219 to 804 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA338566 hippocampus .a 219 to 770 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA460019 tongue, tumor tissue .a 219 to 788 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BG536492 lung .a 219 to 705 1 to 487       487/659
(73 %)
16 diff
(97.6 %id)
DA786233 brain .a 219 to 797 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
DA808445 brain .a 219 to 768 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB214098 trachea .a 219 to 774 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB263802 uterus .a 219 to 768 2 to 555   capped   552/554
(99 %)
4 diff
(99.3 %id)
AV733554 pheochromocytoma .a 220 to 859 1 to 638       638/751
(84 %)
12 diff
(98.5 %id)
BE783806 eye, retinoblastoma .a 220 to 1005 1 to 789       789/1105
(71 %)
38 diff
(96.6 %id)
DB226001 trachea .a 220 to 773 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
AL710128 human skeletal muscle .a 221 to 924 1 to 703       703/703
(100 %)
5 diff
(99.3 %id)
BX476293   .a 221 to 708 1 to 488       488/491
(99 %)
2 diff
(99.6 %id)
DA229331 brain .a 222 to 772 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA312181 hippocampus .a 222 to 771 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
AL698822 human skeletal muscle .a 222 to 763 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
BU838076 melanotic melanoma, cell line, skin .a 222 to 1007 1 to 795       795/909
(87 %)
18 diff
(98.1 %id)
BQ678626 melanotic melanoma, cell line, skin .a 222 to 1079 1 to 861       861/870
(98 %)
10 diff
(98.9 %id)
DA756102   .a 222 to 795 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA798943 brain .a 222 to 758 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BX472303   .a 226 to 928 1 to 703       703/703
(100 %)
4 diff
(99.5 %id)
BX474015   .a 227 to 782 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
BX501157 Liver .a 227 to 932 1 to 704       704/704
(100 %)
6 diff
(99.2 %id)
AK022544   .a 228 to 3235 1 to 3004 D38V tiling clone, available from FLJ,   3004/3004
(100 %)
7 diff
(99.8 %id)
BX952859   .a 229 to 688 1 to 460       460/460
(100 %)
1 diff
(99.8 %id)
AU123292   .a 229 to 943 2 to 716   capped   715/720
(99 %)
11 diff
(98.5 %id)
DN989941 brain, whole brain .a 229 to 855 4 to 629       626/629
(99 %)
8 diff
(98.8 %id)
DB077684 testis .a 230 to 804 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA194636 amygdala .a 231 to 829 2 to 599   capped   598/606
(98 %)
1 diff
(99.9 %id)
BI769896 pooled lung and spleen .a 238 to 1024 1 to 787       787/787
(100 %)
11 diff
(98.7 %id)
BX476483   .a 242 to 717 14 to 490       477/490
(97 %)
6 diff
(98.8 %id)
TI_57183315   .a 242 to 1024 36 to 818       783/818
(95 %)
12 diff
(98.6 %id)
BE893604 melanotic melanoma, skin .a 243 to 980 17 to 758       742/878
(84 %)
38 diff
(95.7 %id)
DR001246 fetal brain .a 269 to 1033 1 to 766       766/768
(99 %)
9 diff
(98.9 %id)
CV023371 mixed .a 377 to 928 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
CN358303 embryonic stem cells, cell lines H1, H7, andH9 .a 464 to 1033 1 to 569       569/569
(100 %)
6 diff
(99.0 %id)
TI_1948139592   .a 473 to 1014 232 to 779       548/1379
(39 %)
36 diff
(97.4 %id)
DB236769 trachea .a 480 to 1063 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
BE932214 head_neck .a 741 to 1021 1 to 282       282/284
(99 %)
7 diff
(97.6 %id)
BE837018 prostate_normal .a 813 to 1163 35 to 385       351/393
(89 %)
4 diff
(99.0 %id)
BX452263 brain, fetal brain .a 937 to 1865 1 to 928       928/928
(100 %)
19 diff
(98.0 %id)
DA330917 hippocampus .a 951 to 1515 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BI039547 nervous_tumor .a 973 to 1404 13 to 448       436/448
(97 %)
6 diff
(98.7 %id)
AW847611 colon .a 1026 to 1585 13 to 572       560/572
(97 %)
6 diff
(99.0 %id)
BE142927 head_neck .a 1030 to 1673 5 to 648       644/648
(99 %)
6 diff
(99.1 %id)
BE142708 head_neck .a 1036 to 1615 1 to 580       580/580
(100 %)
9 diff
(98.5 %id)
AW847610 colon .a 1042 to 1513 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
AW847733 colon .a 1042 to 1462 1 to 421       421/421
(100 %)
0 diff
(100 %id)
AW847736 colon .a 1042 to 1416 1 to 375       375/375
(100 %)
0 diff
(100 %id)
BE142769 head_neck .a 1073 to 1488 1 to 424       424/452
(93 %)
36 diff
(92.1 %id)
BF334021 colon .a 1097 to 1301 1 to 205       205/205
(100 %)
6 diff
(97.1 %id)
DA691380   .a 1263 to 1814 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA795871 brain .a 1263 to 1587 2 to 326   capped   325/325
(100 %)
1 diff
(99.7 %id)
AW847570 colon .a 1333 to 1860 534 to 6       529/534
(99 %)
0 diff
(100 %id)
BQ307337 breast .a 1334 to 1859 3 to 526       524/528
(99 %)
6 diff
(98.9 %id)
DB139338 thymus .a 1365 to 1892 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
BQ308548 breast .a 1367 to 1943 579 to 3   tiling clone,   577/579
(99 %)
0 diff
(100 %id)
DA214737 brain .a 1402 to 1945 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA229436 brain .a 1417 to 1957 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
BQ351964 head_neck .a 1427 to 1763 353 to 10       344/359
(95 %)
0 diff
(100 %id)
AW847544 colon .a 1445 to 1860 418 to 3       416/418
(99 %)
0 diff
(100 %id)
BE142716 head_neck .a 1456 to 1870 419 to 6     Submitted on the opposite strand 414/419
(98 %)
0 diff
(100 %id)
BE142720 head_neck .a 1462 to 1857 414 to 18     Submitted on the opposite strand 397/414
(95 %)
0 diff
(100 %id)
DB276697 uterus .a 1515 to 2057 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BF325569 amnion_normal .a 1585 to 1966 1 to 382       382/382
(100 %)
16 diff
(95.9 %id)
CN358302 embryonic stem cells, DMSO-treated H9 cellline .a 1645 to 2382 1 to 738       738/738
(100 %)
0 diff
(100 %id)
DA230005 brain .a 1695 to 2235 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DR763316 embryonic stem .a 1698 to 2515 1 to 818       818/818
(100 %)
0 diff
(100 %id)
DA186787 amygdala .a 1699 to 2236 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA244902 brain .a 1711 to 2285 2 to 576   capped   575/576
(99 %)
1 diff
(99.9 %id)
BE141863 head_neck .a 1750 to 2135 1 to 386       386/386
(100 %)
0 diff
(100 %id)
CV372972 lung_normal .a 1888 to 2067 1 to 180       180/180
(100 %)
4 diff
(97.8 %id)
BP242212 Liver .a 1895 to 2462 1 to 568       568/568
(100 %)
4 diff
(99.3 %id)
CB155657 brain .a 1898 to 2471 1 to 574       574/574
(100 %)
0 diff
(100 %id)
DA446492 tongue, tumor tissue .a 1932 to 2506 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AA334687   .a 1976 to 2221 1 to 247       247/247
(100 %)
1 diff
(99.6 %id)
AW955771   .a 1977 to 2680 1 to 704       704/713
(98 %)
5 diff
(99.3 %id)
CR742286 liver and spleen .a 2012 to 2746 1 to 734       734/738
(99 %)
3 diff
(99.6 %id)
R94576 liver and spleen .a 2017 to 2387 1 to 382       382/412
(92 %)
13 diff
(96.9 %id)
BI258821 cervical carcinoma cell line, cervix .a 2159 to 2375 381 to 612       564/823
(68 %)
44 diff
(94.7 %id)
BI552148 brain, hippocampus .a 2178 to 2993 1 to 817       817/818
(99 %)
14 diff
(98.3 %id)
BI552017 brain, hippocampus .a 2178 to 3026 1 to 863       863/893
(96 %)
34 diff
(96.2 %id)
BQ776231 Bone, Human Chondrosarcoma Cell Line .a 2182 to 2752 587 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 571/571
(100 %)
0 diff
(100 %id)
TI_44171774   .a 2183 to 2993 83 to 894       812/895
(90 %)
12 diff
(98.7 %id)
TI_44171821   .a 2183 to 3026 89 to 946       858/976
(87 %)
32 diff
(96.8 %id)
DA786996 brain .a 2239 to 2820 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
DA450910 tongue, tumor tissue .a 2247 to 2813 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CU442856 epidermis .a 2249 to 2878 18 to 647       630/647
(97 %)
6 diff
(99.1 %id)
AL702008 human skeletal muscle .a 2395 to 2970 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
DA029235   .a 2430 to 2915 2 to 490   capped   489/489
(100 %)
3 diff
(99.4 %id)
TI_149278833   .a 2435 to 3191 62 to 809     Submitted on the opposite strand 748/1219
(61 %)
65 diff
(94.7 %id)
BF083286 colon .a 2454 to 2900 21 to 468       448/468
(95 %)
6 diff
(98.8 %id)
BI224535 cervical carcinoma cell line, cervix .a 2481 to 3207 25 to 760       736/760
(96 %)
6 diff
(99.3 %id)
TI_149281626   .a 2558 to 3041 546 to 63   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 484/813
(59 %)
2 diff
(99.8 %id)
BU679604 lung, Primary Lung Epithelial Cells .a 2558 to 3041 502 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 484/492
(98 %)
2 diff
(99.6 %id)
BG014267 placenta_normal .a 2569 to 2985 429 to 16       414/429
(96 %)
0 diff
(100 %id)
BQ008557 Chondrosarcoma, Left Pubic Bone .a 2657 to 3383 738 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 722/722
(100 %)
3 diff
(99.6 %id)
DA749912   .a 2671 to 3248 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
DA466870 cord Blood .a 2674 to 3213 2 to 543   capped   542/543
(99 %)
3 diff
(99.5 %id)
BP268775 thyroid .a 2674 to 3258 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
AU133788 ovary, tumor tissue .a 2689 to 3461 2 to 771   capped   770/770
(100 %)
9 diff
(98.9 %id)
DA748853   .a 2702 to 3262 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
AI264686 Kidney .a 2730 to 3237 504 to 1       504/504
(100 %)
3 diff
(99.5 %id)
AW297120   .a 2737 to 3146 425 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 410/410
(100 %)
1 diff
(99.8 %id)
R27497 placenta .a 2752 to 2992 1 to 245       245/245
(100 %)
4 diff
(98.4 %id)
DA684895   .a 2785 to 3340 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
AW024175 Kidney .a 2794 to 3225 427 to 1       427/427
(100 %)
3 diff
(99.3 %id)
AI952922 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2796 to 3232 449 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 433/433
(100 %)
2 diff
(99.6 %id)
DA058063 cerebellum .a 2802 to 3385 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
CN289009 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2807 to 3452 9 to 650       642/650
(98 %)
6 diff
(99.1 %id)
AL567904 brain, fetal brain .a 2833 to 3193 361 to 1       898/954
(94 %)
38 diff
(96.1 %id)
AA993203   .a 2833 to 3311 479 to 2       478/479
(99 %)
0 diff
(100 %id)
R94577 liver and spleen .a 2841 to 3127 292 to 1       292/292
(100 %)
5 diff
(98.3 %id)
AA993186   .a 2891 to 3311 423 to 3       421/423
(99 %)
0 diff
(100 %id)
BI261256 cervical carcinoma cell line, cervix .a 2892 to 3560 37 to 736       700/736
(95 %)
6 diff
(99.2 %id)
G36523   .a 2910 to 3139 244 to 8     Submitted on the opposite strand 237/245
(96 %)
9 diff
(96.4 %id)
R33219 placenta .a 2910 to 3139 244 to 8       237/245
(96 %)
9 diff
(96.4 %id)
AI565906 adenocarcinoma, Pancreas .a 2937 to 3238 303 to 6       298/303
(98 %)
0 diff
(100 %id)
AA363178 ovary .a 2952 to 3130 1 to 179       179/179
(100 %)
1 diff
(99.5 %id)
AV651039 corresponding non cancerous liver tissue .a 2958 to 3560 1 to 599     Submitted on the opposite strand 599/599
(100 %)
2 diff
(99.7 %id)
AV651071 corresponding non cancerous liver tissue .a 2958 to 3560 1 to 599     Submitted on the opposite strand 599/599
(100 %)
2 diff
(99.7 %id)
AV651110 corresponding non cancerous liver tissue .a 2958 to 3570 1 to 609     Submitted on the opposite strand 609/639
(95 %)
9 diff
(98.6 %id)
AW021217 cochlea, ear .a 3016 to 3235 1 to 216   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 216/216
(100 %)
7 diff
(96.8 %id)
BI492156.
matches multiple genes
cochlea, ear .a 3020 to 3238 230 to 16     also hits gene ZEB2andGTDC1 215/234
(91 %)
0 diff
(100 %id)
AI864326 pooled .a 3040 to 3234 191 to 1       191/193
(98 %)
3 diff
(98.5 %id)
N95517 multiple sclerosis lesions .a 3103 to 3534 11 to 432       422/438
(96 %)
11 diff
(97.5 %id)
AV713553   .a 3120 to 3844 1 to 721       721/721
(100 %)
5 diff
(99.4 %id)
TI_57238845   .a 3129 to 3934 32 to 831       800/831
(96 %)
6 diff
(99.3 %id)
BI915576 brain .a 3131 to 3934 1 to 798       798/798
(100 %)
4 diff
(99.5 %id)
BP258799 heart .a 3150 to 3719 1 to 569       569/569
(100 %)
39 diff
(93.2 %id)
AU126416   .a 3163 to 3972 2 to 809   capped   808/810
(99 %)
14 diff
(98.3 %id)
DA608916   .a 3170 to 3742 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
AL601394   .a 3208 to 3899 1 to 702   tiling clone,   702/705
(99 %)
15 diff
(97.9 %id)
AL601400   .a 3208 to 3799 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
DA570171 whole embryo, mainly head .a 3232 to 4105 2 to 871   capped   870/870
(100 %)
11 diff
(98.8 %id)
DA593645 lung .a 3268 to 3832 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
W31934 parathyroid gland, parathyroid tumor .a 3313 to 3729 1 to 418       418/418
(100 %)
1 diff
(99.8 %id)
W63725 parathyroid gland, parathyroid tumor .a 3313 to 3867 1 to 552       552/600
(92 %)
6 diff
(99.0 %id)
F06511 brain, total brain .a 3357 to 3624 1 to 268       268/268
(100 %)
1 diff
(99.7 %id)
AL047986 uterus .a 3415 to 3914 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BI256547 cervical carcinoma cell line, cervix .a 3464 to 4169 29 to 736       708/737
(96 %)
8 diff
(99.0 %id)
BP220167 colon .a 3469 to 4055 1 to 584       584/584
(100 %)
13 diff
(97.8 %id)
BE564768 bladder, carcinoma, cell line .a 3528 to 4152 1 to 627       627/729
(86 %)
21 diff
(97.2 %id)
DA292777 hippocampus .a 3556 to 4138 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
CD559158 White Matter .a 3664 to 4408 30 to 785       756/940
(80 %)
17 diff
(98.2 %id)
CD518094 White Matter .a 3671 to 4470 34 to 838       805/895
(89 %)
6 diff
(99.4 %id)
AW842610 colon_normal .a 3681 to 4293 630 to 16       615/630
(97 %)
0 diff
(100 %id)
BE896673 melanotic melanoma, skin .a 3716 to 4377 1 to 664       664/1074
(61 %)
11 diff
(99.0 %id)
BF911807 uterus_tumor .a 3733 to 4229 501 to 5     Submitted on the opposite strand 497/501
(99 %)
7 diff
(98.7 %id)
BF912202 uterus_tumor .a 3733 to 4229 501 to 5     Submitted on the opposite strand 497/501
(99 %)
7 diff
(98.7 %id)
AW379355 head_neck .a 3743 to 4351 32 to 640       609/640
(95 %)
6 diff
(99.1 %id)
CU445744 epidermis .a 3753 to 4257 1 to 504       504/517
(97 %)
8 diff
(98.5 %id)
AK055261 brain .a 3756 to 6047 1 to 2292   tiling clone, available from FLJ,   2292/2292
(100 %)
2 diff
(100.0 %id)
CU443615 epidermis .a 3756 to 4257 514 to 14     Submitted on the opposite strand 501/517
(96 %)
0 diff
(100 %id)
CU449115 epidermis .a 3756 to 4486 741 to 12     Submitted on the opposite strand 730/744
(98 %)
0 diff
(100 %id)
CU452293 epidermis .a 3756 to 4257 514 to 14     Submitted on the opposite strand 501/517
(96 %)
0 diff
(100 %id)
CU454605 epidermis .a 3756 to 4257 514 to 14     Submitted on the opposite strand 501/517
(96 %)
0 diff
(100 %id)
DA484297 brain .a 3757 to 4284 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
AA345224 gall bladder .a 3762 to 4098 1 to 339       339/339
(100 %)
3 diff
(99.2 %id)
BI767312 pooled lung and spleen .a 3764 to 4559 1 to 796       796/796
(100 %)
5 diff
(99.4 %id)
TI_57181414   .a 3764 to 4559 54 to 849       796/849
(93 %)
6 diff
(99.3 %id)
N42755 melanocyte .a 3781 to 4185 1 to 411       411/428
(96 %)
12 diff
(97.2 %id)
AI921883 2 pooled tumors (clear cell type), Kidney .a 3897 to 4478 582 to 2       581/582
(99 %)
0 diff
(100 %id)
DA569143 whole embryo, mainly head .a 3937 to 4675 2 to 740   fully sequenced, capped   739/739
(100 %)
1 diff
(99.9 %id)
AW877769 pnet .a 3951 to 4370 9 to 428       420/428
(98 %)
6 diff
(98.6 %id)
AA773664 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3954 to 4273 1 to 320       320/320
(100 %)
1 diff
(99.7 %id)
BE463701 Kidney .a 3985 to 4474 499 to 11   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 489/489
(100 %)
3 diff
(99.4 %id)
BF431264 Kidney .a 4007 to 4474 477 to 11   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 467/467
(100 %)
2 diff
(99.6 %id)
DT217761 brain .a 4008 to 4761 1 to 753       753/753
(100 %)
2 diff
(99.8 %id)
AI863596 2 pooled tumors (clear cell type), Kidney .a 4023 to 4478 458 to 2       457/460
(99 %)
0 diff
(100 %id)
BX108893 melanocyte .a 4067 to 4597 1 to 530       530/530
(100 %)
2 diff
(99.7 %id)
N36634 melanocyte .a 4068 to 4396 1 to 328       328/333
(98 %)
7 diff
(97.9 %id)
N36605 melanocyte .a 4070 to 4381 1 to 311       311/311
(100 %)
1 diff
(99.7 %id)
H13092 placenta .a 4093 to 4422 1 to 336       336/336
(100 %)
6 diff
(98.3 %id)
BQ922578 sciatic nerve .a 4123 to 4923 1 to 805       805/965
(83 %)
19 diff
(98.1 %id)
AI383367 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4152 to 4473 325 to 1       325/325
(100 %)
5 diff
(98.5 %id)
AW999073 breast_normal .a 4213 to 4393 12 to 191       180/195
(92 %)
3 diff
(98.5 %id)
CB050023 Prostate .a 4226 to 4655 5 to 433   fully sequenced, Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 429/433
(99 %)
6 diff
(98.7 %id)
TI_154104137   .a 4230 to 5082 931 to 93   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 839/925
(90 %)
59 diff
(93.7 %id)
CA446213 Chondrosarcoma, Left Pubic Bone .a 4340 to 5082 759 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 741/741
(100 %)
2 diff
(99.8 %id)
BU742931 eye, fetal eye .a 4356 to 5114 776 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 758/758
(100 %)
3 diff
(99.7 %id)
BG170278 hypernephroma, cell line, Kidney .a 4376 to 5029 1 to 648       648/764
(84 %)
11 diff
(98.6 %id)
BQ014048 Chondrosarcoma, Left Pubic Bone .a 4433 to 5082 668 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 650/650
(100 %)
0 diff
(100 %id)
AI423056 brain, glioblastoma (pooled) .a 4454 to 5114 653 to 1       653/825
(79 %)
13 diff
(98.5 %id)
TI_159713540   .a 4465 to 5081 663 to 42       622/998
(62 %)
0 diff
(100 %id)
BQ882926 brain, neuroblastoma, cell line .a 4478 to 5355 1 to 882       882/887
(99 %)
8 diff
(99.1 %id)
BF111529 pooled .a 4510 to 4945 436 to 1       436/436
(100 %)
0 diff
(100 %id)
BF952741 nervous_normal .a 4530 to 4991 472 to 12       461/477
(96 %)
0 diff
(100 %id)
AW974187   .a 4552 to 5113 563 to 1     Submitted on the opposite strand 563/563
(100 %)
3 diff
(99.5 %id)
N26003 melanocyte .a 4556 to 5114 562 to 1       562/562
(100 %)
25 diff
(95.6 %id)
TI_154011491   .a 4559 to 5114 686 to 121       566/875
(64 %)
14 diff
(98.4 %id)
DB371381 ovary, tumor tissue .a 4560 to 5114 555 to 1       555/557
(99 %)
10 diff
(98.3 %id)
BE858704 brain, glioblastoma (pooled) .a 4563 to 5114 552 to 1       552/552
(100 %)
2 diff
(99.7 %id)
AA131804 uterus .a 4568 to 5112 1 to 551   fully sequenced,   551/551
(100 %)
10 diff
(98.2 %id)
AA031858 uterus .a 4569 to 5062 1 to 498       498/499
(99 %)
5 diff
(99.0 %id)
AA232932 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4569 to 4985 1 to 417   fully sequenced,   417/417
(100 %)
0 diff
(100 %id)
DA832865 placenta .a 4570 to 5164 2 to 598   capped   597/608
(98 %)
4 diff
(99.4 %id)
AA253100 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4574 to 4889 1 to 316   fully sequenced,   316/316
(100 %)
0 diff
(100 %id)
AI935665 Kidney .a 4580 to 5114 541 to 6       536/541
(99 %)
0 diff
(100 %id)
BG149741 carcinoid, lung .a 4580 to 5114 540 to 6       535/540
(99 %)
0 diff
(100 %id)
N32538 melanocyte .a 4584 to 5114 538 to 1       538/538
(100 %)
11 diff
(98.0 %id)
N25975 melanocyte .a 4585 to 5114 530 to 1       530/530
(100 %)
5 diff
(99.1 %id)
AI884851 anaplastic oligodendroglioma, brain .a 4590 to 5114 530 to 6       525/530
(99 %)
0 diff
(100 %id)
AI796724 Kidney .a 4596 to 5114 532 to 15   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 518/518
(100 %)
1 diff
(99.9 %id)
AA644645 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4605 to 4986 1 to 382       382/382
(100 %)
0 diff
(100 %id)
AI420409 Prostate .a 4609 to 5114 523 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 506/506
(100 %)
4 diff
(99.3 %id)
AW449060   .a 4609 to 5114 523 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 506/506
(100 %)
0 diff
(100 %id)
BF062338 pooled germ cell tumors .a 4613 to 5114 502 to 1       502/502
(100 %)
1 diff
(99.9 %id)
FN094212 breast carcinoma .a 4617 to 4696 1 to 76       76/77
(98 %)
3 diff
(96.2 %id)
AI417836 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4620 to 5116 499 to 3       497/499
(99 %)
0 diff
(100 %id)
CB050022 Prostate .a 4625 to 5114 530 to 41   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 490/490
(100 %)
2 diff
(99.6 %id)
BE867251 adenocarcinoma, colon .a 4630 to 5281 1 to 646       646/650
(99 %)
11 diff
(98.4 %id)
DB356916 whole embryo, mainly head .a 4633 to 5114 482 to 1       482/511
(94 %)
3 diff
(99.5 %id)
AI433860 Kidney .a 4639 to 5114 479 to 4       476/479
(99 %)
0 diff
(100 %id)
AI081992 breast .a 4640 to 5114 475 to 1       475/475
(100 %)
0 diff
(100 %id)
AI982998 adenocarcinoma, Pancreas .a 4643 to 5114 473 to 2       472/473
(99 %)
0 diff
(100 %id)
DB355741 whole embryo, mainly head .a 4645 to 5117 472 to 1   fully sequenced,   472/472
(100 %)
1 diff
(99.8 %id)
AI351763 pooled germ cell tumors .a 4647 to 5114 473 to 6       468/473
(98 %)
0 diff
(100 %id)
BE463487 Kidney .a 4647 to 5114 469 to 2       468/469
(99 %)
0 diff
(100 %id)
AI418568 brain, glioblastoma (pooled) .a 4650 to 5114 469 to 5       465/469
(99 %)
0 diff
(100 %id)
AI378405 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4654 to 5114 469 to 9       461/471
(97 %)
0 diff
(100 %id)
EB390425 bladder .a 4657 to 5011 38 to 392       355/427
(83 %)
3 diff
(99.3 %id)
AI374847   .a 4660 to 5114 458 to 4       455/458
(99 %)
0 diff
(100 %id)
AI400468 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4666 to 5114 457 to 9       449/457
(98 %)
0 diff
(100 %id)
AI146396 brain, glioblastoma (pooled) .a 4667 to 5114 454 to 7       448/454
(98 %)
0 diff
(100 %id)
AI130894 heart .a 4672 to 5114 446 to 4       443/446
(99 %)
0 diff
(100 %id)
AW152165 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4674 to 5114 448 to 8       441/448
(98 %)
0 diff
(100 %id)
AI478886 pooled .a 4682 to 5115 434 to 1       434/434
(100 %)
0 diff
(100 %id)
N58935 multiple sclerosis lesions .a 4684 to 5112 431 to 3       429/431
(99 %)
0 diff
(100 %id)
AA834899 ovary .a 4690 to 5097 408 to 1       408/408
(100 %)
1 diff
(99.8 %id)
AA235368 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4691 to 5114 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AW027997 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4691 to 5114 425 to 2       424/425
(99 %)
0 diff
(100 %id)
AA456302 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4694 to 5114 421 to 1       421/421
(100 %)
0 diff
(100 %id)
AA573158 breast .a 4696 to 5114 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AI160136 brain, glioblastoma (pooled) .a 4716 to 5114 399 to 1       399/399
(100 %)
6 diff
(98.5 %id)
BQ232658 melanotic melanoma, skin .a 4717 to 5494 12 to 805   tiling clone,   794/929
(85 %)
18 diff
(98.1 %id)
BE928812 prostate_tumor .a 4734 to 4949 13 to 228       216/228
(94 %)
6 diff
(97.4 %id)
AI142564 brain, glioblastoma (pooled) .a 4739 to 5114 382 to 7       376/382
(98 %)
0 diff
(100 %id)
AI492215 B-cell, chronic lymphotic leukemia .a 4745 to 5114 371 to 2       370/371
(99 %)
0 diff
(100 %id)
BF439000 pooled .a 4746 to 5114 373 to 5       369/373
(98 %)
0 diff
(100 %id)
AA630574   .a 4760 to 5114 358 to 4       355/358
(99 %)
0 diff
(100 %id)
AI419445 brain, glioblastoma (pooled) .a 4766 to 5114 355 to 7       349/355
(98 %)
0 diff
(100 %id)
AL047987 uterus .a 4793 to 5114 331 to 9       323/336
(96 %)
0 diff
(100 %id)
AI686990 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 4808 to 5115 331 to 25   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 307/307
(100 %)
17 diff
(94.5 %id)
W31471 parathyroid gland, parathyroid tumor .a 4812 to 5114 306 to 1       306/307
(99 %)
5 diff
(98.4 %id)
AI085123 senescent fibroblast .a 4822 to 5116 295 to 1       295/295
(100 %)
0 diff
(100 %id)
AA131735 uterus .a 4824 to 5114 296 to 1   fully sequenced,   296/296
(100 %)
1 diff
(99.7 %id)
Z39449 brain, total brain .a 4831 to 5116 286 to 1       286/286
(100 %)
0 diff
(100 %id)
CB050757 Prostate .a 4831 to 5114 328 to 45       284/328
(86 %)
16 diff
(95.2 %id)
D60143   .a 4836 to 5116 281 to 1       281/281
(100 %)
7 diff
(97.6 %id)
AA130849   .a 4838 to 5114 279 to 3       277/279
(99 %)
0 diff
(100 %id)
CA435915 lung, Metastatic Chondrosarcoma .a 4838 to 5114 297 to 21       277/297
(93 %)
0 diff
(100 %id)
T94229 lung .a 4842 to 5114 289 to 11     Submitted on the opposite strand 279/294
(94 %)
0 diff
(100 %id)
AA253045 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4859 to 5099 244 to 10   fully sequenced,   235/244
(96 %)
3 diff
(98.8 %id)
R25650 placenta .a 4860 to 5114 260 to 2       259/261
(99 %)
0 diff
(100 %id)
AI290423 placenta .a 4867 to 5114 259 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 248/248
(100 %)
0 diff
(100 %id)
H13296 placenta .a 4947 to 5114 173 to 6       168/173
(97 %)
0 diff
(100 %id)
AA232944 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4955 to 5114 160 to 1   fully sequenced,   160/160
(100 %)
0 diff
(100 %id)
AA683047 schizophrenic brain S-11 frontal lobe .a 4984 to 5349 1 to 366     Submitted on the opposite strand 366/366
(100 %)
1 diff
(99.8 %id)
FN168584 breast carcinoma .a 5010 to 5113 1 to 103       103/106
(97 %)
2 diff
(98.2 %id)
TI_151770921   .a 5300 to 5977 110 to 790   AAA   681/974
(69 %)
11 diff
(98.9 %id)
BU733671 eye, Retina Foveal and Macular .a 5356 to 5977 640 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 622/622
(100 %)
0 diff
(100 %id)
AI791531 carcinoid, lung .a 5381 to 5926 1 to 546       546/546
(100 %)
0 diff
(100 %id)
CA421418 Chondrosarcoma Grade II, Left Pelvis .a 5384 to 6047 683 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 665/666
(99 %)
2 diff
(99.7 %id)
AI733041 carcinoid, lung .a 5436 to 6046 613 to 3       611/613
(99 %)
0 diff
(100 %id)
CR743896 carcinoid, lung .a 5461 to 5767 1 to 307       307/307
(100 %)
1 diff
(99.7 %id)
BE645464 Prostate .a 5496 to 6048 554 to 2   tiling clone,   553/554
(99 %)
0 diff
(100 %id)
AA302354 aorta .a 5503 to 5739 1 to 237       237/237
(100 %)
0 diff
(100 %id)
DB379277 placenta .a 5528 to 6045 519 to 2       518/574
(90 %)
0 diff
(100 %id)
DB315096 brain .a 5534 to 6047 514 to 1       514/514
(100 %)
0 diff
(100 %id)
AI659510 Prostate .a 5649 to 6048 401 to 2       400/401
(99 %)
0 diff
(100 %id)
AA885795 carcinoid, lung .a 5731 to 6046 318 to 3       316/318
(99 %)
0 diff
(100 %id)
AW381379 head_neck .a 5773 to 5966 1 to 194       194/194
(100 %)
3 diff
(98.5 %id)
FN156193 breast carcinoma .a 5822 to 5917 1 to 93       93/93
(100 %)
5 diff
(94.7 %id)
DB163962 thymus .b 1 to 602 2 to 603   tiling clone, capped   602/602
(100 %)
1 diff
(99.9 %id)
DA660853   .b 9 to 571 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA721451   .b 22 to 602 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA328501 hippocampus .b 47 to 617 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DB238917 trachea .b 49 to 622 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
AL539535 brain, fetal brain .b 99 to 1133 1 to 1026   tiling clone,   1026/1030
(99 %)
18 diff
(98.3 %id)
AL359565 brain .c 1 to 1446 1 to 1446 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1446/1446
(100 %)
2 diff
(99.9 %id)
BY799560 eye .c 34 to 588 1 to 555       555/555
(100 %)
0 diff
(100 %id)
CV569092 cornea, eye .c 1064 to 1528 1 to 465   tiling clone,   465/465
(100 %)
1 diff
(99.8 %id)
DB158841 thymus .d-u 1 to 582 2 to 583 exact tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
AK092791 small intestine .d-u 45 to 2603 1 to 2559 exact tiling clone, available from FLJ,   2559/2559
(100 %)
3 diff
(99.9 %id)
AX747733   .d-u 45 to 2603 1 to 2559 exact     2559/2559
(100 %)
3 diff
(99.9 %id)
DA921395 small intestine .d-u 46 to 593 2 to 550 P36A S37V P38S P39S P40T ... capped   549/549
(100 %)
1 diff
(99.9 %id)
DW412127 Liver .d-u 1783 to 2092 17 to 326   tiling clone,   310/326
(95 %)
6 diff
(98.2 %id)
DB331936 small intestine .d-u 2050 to 2603 555 to 1       555/555
(100 %)
1 diff
(99.9 %id)
AI021983 liver and spleen .d-u 2079 to 2604 526 to 1       526/526
(100 %)
6 diff
(98.9 %id)
BX110876 colon, moderately-differentiated adenocarcinoma .d-u 2146 to 2617 472 to 1   tiling clone, Submitted on the opposite strand 472/472
(100 %)
2 diff
(99.6 %id)
AA704278 liver and spleen .d-u 2173 to 2603 431 to 1       431/431
(100 %)
4 diff
(99.1 %id)
AI140499 liver and spleen .d-u 2177 to 2603 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
AI445283 colon, moderately-differentiated adenocarcinoma .d-u 2299 to 2606 308 to 1       308/308
(100 %)
0 diff
(100 %id)
BP352160   .e 1 to 582 2 to 583 exact tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DA938258 Spleen .f 1 to 594 2 to 596 P36A S37V P38S P39S P40T ... tiling clone, capped   595/595
(100 %)
5 diff
(99.2 %id)
DA238082 brain Gene CTTNBP2NL, variant not shown       capped Suspected internal deletion, suspected internal deletion, this clone was ignored    
AV650965 corresponding non cancerous liver tissue Gene CTTNBP2NL, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV651089 corresponding non cancerous liver tissue Gene CTTNBP2NL, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BP240019 Liver Gene CTTNBP2NL, variant not shown         Suspected internal deletion, this clone was ignored    
R10230 liver and spleen Gene CTTNBP2NL, variant not shown         Suspected internal deletion, this clone was ignored    
R24438 placenta Gene CTTNBP2NL, variant not shown              
R24439 placenta Gene CTTNBP2NL, variant not shown              
AA632432   Gene CTTNBP2NL, variant not shown              
AI655654 pooled germ cell tumors Gene CTTNBP2NL, variant not shown         Suspected internal deletion, this clone was ignored    
BF222904 pooled germ cell tumors Gene CTTNBP2NL, variant not shown         Suspected internal deletion, this clone was ignored    
AU155119 ovary, tumor tissue Gene CTTNBP2NL, variant not shown         Suspected internal deletion, this clone was ignored    
AU133986 ovary, tumor tissue Gene CTTNBP2NL, variant not shown       capped Suspected internal deletion, this clone was ignored    
BQ024832 placenta Gene CTTNBP2NL, variant not shown       AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base)    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI