To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene C1orf49andC1orf220TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
60 supporting clones for gene C1orf49andC1orf220 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG772571 testis .a 1 to 803 1 to 800 D188E C189L W190L I191D Y192L ... tiling clone,   800/815
(98 %)
14 diff
(98.3 %id)
BG773295 testis .a 1 to 681 1 to 679   tiling clone,   679/681
(99 %)
9 diff
(98.7 %id)
AL136694 brain .b 1 to 1027 1 to 1027 S14C tiling clone, available from DKFZ, AAA   1027/1027
(100 %)
5 diff
(99.6 %id)
NM_032126.4   .b 5 to 1032 1 to 1028 exact RefSeq,   1028/1028
(100 %)
0 diff
(100 %id)
BM563719 brain, medulla .b 62 to 1026 15 to 976 L171R tiling clone,   962/1065
(90 %)
20 diff
(98.2 %id)
DB508166 testis .b 601 to 1022 1 to 420   tiling clone, Submitted on the opposite strand 420/420
(100 %)
4 diff
(99.1 %id)
NM_001170722.1   .c 1 to 921 1 to 921 exact RefSeq,   921/921
(100 %)
0 diff
(100 %id)
BI464425 testis .c 52 to 770 1 to 720 E108D K109E M110D D111G I112H ... tiling clone,   720/816
(88 %)
8 diff
(99.1 %id)
BG719876 testis .c 63 to 852 1 to 785 C29A L30W E31N L32* AAA   785/785
(100 %)
16 diff
(98.0 %id)
BC034972 testis .c 68 to 852 1 to 785 exact tiling clone, available from MGC, AAA   785/785
(100 %)
1 diff
(99.9 %id)
TI_1948100292   .c 105 to 729 122 to 746       625/1350
(46 %)
18 diff
(98.7 %id)
TI_1948100778   .c 111 to 443 123 to 455   fully sequenced,   333/455
(73 %)
6 diff
(98.7 %id)
TI_1948100616   .c 112 to 443 128 to 459   fully sequenced,   332/360
(92 %)
6 diff
(98.4 %id)
CV024216 mixed .c 113 to 725 1 to 611       611/612
(99 %)
3 diff
(99.6 %id)
TI_1948100617   .c 382 to 769 507 to 121   fully sequenced,   387/507
(76 %)
0 diff
(100 %id)
TI_1948100779   .c 382 to 773 503 to 112   fully sequenced,   392/503
(77 %)
0 diff
(100 %id)
NM_001170723.1   .d 1 to 836 1 to 836 exact RefSeq, AAA   836/836
(100 %)
0 diff
(100 %id)
TI_57170574   .d 33 to 837 35 to 839 K66N L171R tiling clone,   805/890
(90 %)
14 diff
(98.5 %id)
BI825350 brain, medulla .d 36 to 837 1 to 802 K66N L171R     802/853
(94 %)
9 diff
(99.0 %id)
TI_57170671   .d 59 to 836 57 to 833 L171R L185X L186C C187V A188L ... tiling clone, AAA   777/833
(93 %)
10 diff
(98.8 %id)
BI825610 brain, medulla .d 67 to 836 1 to 769 L171R L185X L186C C187V A188L ... AAA   769/769
(100 %)
4 diff
(99.5 %id)
BX359643 Placenta Cot 25-normalized .d 79 to 839 1 to 761 L171R Q197X L198X     761/761
(100 %)
4 diff
(99.5 %id)
AL552172 placenta, Placenta Cot 25-normalized .d 79 to 839 1 to 762 A19X L76T M77N D78G K79Q ...     762/762
(100 %)
12 diff
(98.5 %id)
AW340027 pooled .d 326 to 833 508 to 1   tiling clone,   508/508
(100 %)
1 diff
(99.9 %id)
NM_001170724.1   .e 1 to 897 1 to 897 exact RefSeq,   897/897
(100 %)
0 diff
(100 %id)
BI461686 testis .e 35 to 809 1 to 770 F81L D82I K83N L84F H85T ... tiling clone,   770/771
(99 %)
13 diff
(98.4 %id)
DB447554 testis .e 37 to 464 1 to 431   tiling clone,   431/432
(99 %)
12 diff
(97.3 %id)
DB455876.
matches multiple genes
testis .e 48 to 543 1 to 496   tiling clone, also hits gene choysabo 496/496
(100 %)
0 diff
(100 %id)
DB444540 testis .e 55 to 479 1 to 423       423/423
(100 %)
8 diff
(98.2 %id)
AA383469 testis .e 110 to 413 1 to 304       304/304
(100 %)
1 diff
(99.7 %id)
AK093269 testis .f 1 to 2376 2 to 2377 L171R tiling clone, available from FLJ,   2377/2377
(100 %)
2 diff
(100.0 %id)
AX748023   .f 1 to 2376 2 to 2377 L171R     2377/2377
(100 %)
2 diff
(100.0 %id)
DB029033 testis .f 1 to 553 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA896799 skeletal muscle .f 300 to 869 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
AI191948   .f 1278 to 1539 265 to 5       261/265
(98 %)
0 diff
(100 %id)
AI191959   .f 1280 to 1539 264 to 5       260/264
(98 %)
0 diff
(100 %id)
DB336854 testis .f 1833 to 2376 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
AW628627 pooled .f 2139 to 2381 247 to 4   tiling clone,   244/247
(98 %)
0 diff
(100 %id)
AK097518 testis .g 1 to 1829 1 to 1829 L95R tiling clone, available from FLJ,   1829/1829
(100 %)
3 diff
(99.9 %id)
DB034837 testis .g 2 to 570 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB337341 testis .g 1282 to 1829 549 to 1   tiling clone,   549/549
(100 %)
2 diff
(99.7 %id)
BQ777099 Pancreas, Purified pancreatic islet .h 1 to 593 1 to 592 A2T P3H P5S P6A P7G ... tiling clone,   592/592
(100 %)
9 diff
(98.5 %id)
CK902294 Pancreas, Purified pancreatic islet .h 63 to 641 1 to 580   tiling clone, Submitted on the opposite strand 580/580
(100 %)
2 diff
(99.7 %id)
BF960162 nervous_normal .i-u 1 to 274 351 to 78   tiling clone,   274/351
(78 %)
0 diff
(100 %id)
AW937708 denis_drash .i-u 111 to 560 17 to 466   tiling clone,   450/516
(87 %)
11 diff
(97.9 %id)
BE041517 pooled .j 1 to 341 356 to 15 L8P H9S H10S C11L G12W ... tiling clone, AAA   342/342
(100 %)
2 diff
(99.5 %id)
AK092849 Spleen .k 1 to 2576 2 to 2577 T69A available from FLJ,   2577/2577
(100 %)
4 diff
(99.9 %id)
AX747765   .k 1 to 2576 2 to 2577 T69A     2577/2577
(100 %)
4 diff
(99.9 %id)
NR_033186.1   .k 1 to 2576 2 to 2577 exact RefSeq, tiling clone,   2577/2577
(100 %)
0 diff
(100 %id)
DA932454 Spleen .k 1 to 564 2 to 565 T69A capped   564/564
(100 %)
1 diff
(99.9 %id)
TI_1959498639   .k 18 to 606 55 to 643 exact     589/643
(91 %)
6 diff
(99.1 %id)
BC136727 Brain, cerebellum, PCR rescued clones .k 19 to 2131 1 to 2113 exact     2113/2113
(100 %)
1 diff
(100.0 %id)
DA221597 brain .k 32 to 539 2 to 510 exact capped   509/509
(100 %)
1 diff
(99.9 %id)
TI_1959500183   .k 582 to 1822 1235 to 6       1230/1279
(96 %)
20 diff
(98.5 %id)
TI_1959503103   .k 990 to 2132 1205 to 69       1137/1260
(90 %)
0 diff
(100 %id)
TI_1959498651   .k 1286 to 2132 922 to 70       853/922
(92 %)
0 diff
(100 %id)
CK902295 Pancreas, Purified pancreatic islet .k 1694 to 2289 599 to 4     Submitted on the opposite strand 596/599
(99 %)
0 diff
(100 %id)
BQ778206 Pancreas, Purified pancreatic islet .k 1771 to 2286 516 to 1       516/516
(100 %)
4 diff
(99.3 %id)
DB332580 Spleen .k 2041 to 2576 536 to 1       536/536
(100 %)
0 diff
(100 %id)
DA920681 small intestine .l 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
AI692881 pooled .m-u 1 to 549 549 to 1 K13X tiling clone,   549/549
(100 %)
1 diff
(99.9 %id)
CN357799 embryonic stem cells, cell lines H1, H7, andH9 .m-u 87 to 548 462 to 1 D40N   Submitted on the opposite strand 462/462
(100 %)
5 diff
(99.0 %id)
AI240606 pooled .m-u 262 to 549 288 to 1 exact tiling clone,   288/288
(100 %)
0 diff
(100 %id)
AI762835 B-cell, chronic lymphotic leukemia .n-u 1 to 456 456 to 1 Y35S tiling clone,   456/456
(100 %)
3 diff
(99.4 %id)
BI004784 head_normal .o-u 1 to 298 27 to 321 G2W L3S W7G D8I Y9I ... tiling clone,   295/328
(89 %)
6 diff
(98.2 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l, .m-u, .n-u, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes