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Gene FAM172AandPOU5F2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
298 supporting clones for gene FAM172AandPOU5F2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_032042.5   .a 1 to 4720 1 to 4720 exact RefSeq,   4720/4720
(100 %)
0 diff
(100 %id)
DC333894 hippocampus .a 29 to 579 1 to 551   tiling clone,   551/551
(100 %)
1 diff
(99.9 %id)
DC423756 uterus .a 30 to 611 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DC333523 hippocampus .a 46 to 596 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
DC333078 hippocampus .a 49 to 588 1 to 540       540/540
(100 %)
0 diff
(100 %id)
DC335038 hippocampus .a 54 to 626 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC408309 thymus .a 54 to 589 1 to 536       536/536
(100 %)
0 diff
(100 %id)
DC422868 uterus .a 54 to 600 1 to 547       547/547
(100 %)
0 diff
(100 %id)
BF966420 brain, hippocampus .a 60 to 734 1 to 668       668/891
(74 %)
20 diff
(97.8 %id)
DB478414.
matches multiple genes
hippocampus .a 65 to 531 1 to 467     also hits gene shysnubu 467/467
(100 %)
1 diff
(99.8 %id)
CB995721 placenta, pre-eclamptic placenta .a 65 to 763 28 to 736       709/840
(84 %)
23 diff
(97.3 %id)
DC336124 hippocampus .a 66 to 640 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DN993480 brain, whole brain .a 76 to 705 9 to 638       630/638
(98 %)
6 diff
(99.1 %id)
AK312930 placenta .a 96 to 1458 1 to 1363 exact     1363/1363
(100 %)
0 diff
(100 %id)
DC322985 brain .a 96 to 633 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DC335415 hippocampus .a 96 to 669 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DC344646 cervix .a 96 to 666 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC382654 placenta .a 96 to 689 1 to 594       594/594
(100 %)
0 diff
(100 %id)
DC372675   .a 169 to 669 1 to 502       500/502
(99 %)
3 diff
(99.5 %id)
BC020584 Duodenum, adenocarcinoma .a 199 to 4374 1 to 4177 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4177/4177
(100 %)
2 diff
(100.0 %id)
BX280740 duodenal adenocarcinoma, cell line, small intestine .a 199 to 669 1 to 471       471/471
(100 %)
0 diff
(100 %id)
BF983923 duodenal adenocarcinoma, cell line, small intestine .a 199 to 775 12 to 587       576/939
(61 %)
8 diff
(99.2 %id)
TI_1948093700   .a 201 to 775 123 to 698       576/1232
(46 %)
7 diff
(99.5 %id)
CV023940 mixed .a 208 to 761 1 to 555       555/555
(100 %)
9 diff
(98.4 %id)
TI_1948093543   .a 208 to 775 135 to 704       570/1405
(40 %)
13 diff
(99.1 %id)
TI_1948093861   .a 208 to 979 136 to 913       778/1287
(60 %)
29 diff
(97.8 %id)
TI_1948094029   .a 208 to 775 126 to 693       568/1380
(41 %)
7 diff
(99.5 %id)
BE891701 melanotic melanoma, skin .a 280 to 775 1 to 493       493/914
(53 %)
8 diff
(99.2 %id)
DB462940 hippocampus .a 293 to 774 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
DB473243 hippocampus .a 293 to 767 1 to 475       475/475
(100 %)
0 diff
(100 %id)
TI_1948094030   .a 988 to 1454 603 to 137       467/1487
(31 %)
8 diff
(99.5 %id)
NM_001163417.1   .b 1 to 4596 1 to 4596 exact RefSeq,   4596/4596
(100 %)
0 diff
(100 %id)
AK296986 tongue, tumor tissue .b 24 to 1392 1 to 1369 exact tiling clone,   1369/1369
(100 %)
1 diff
(100.0 %id)
DC348219 tongue, tumor tissue .b 24 to 572 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC423235 uterus .b 29 to 564 1 to 536   tiling clone,   536/536
(100 %)
0 diff
(100 %id)
BP201305 amygdala .b 37 to 618 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC423175 uterus .b 37 to 581 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
BY797080 eye .b 51 to 678 1 to 628       628/628
(100 %)
0 diff
(100 %id)
DB472804 hippocampus .b 65 to 526 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
TI_57219094   .b 76 to 833 54 to 811       758/820
(92 %)
12 diff
(98.6 %id)
TI_149312189   .b 77 to 779 786 to 86   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 701/1033
(67 %)
3 diff
(99.8 %id)
BI754123 brain .b 81 to 833 1 to 754       754/763
(98 %)
6 diff
(99.3 %id)
BG389642 embryonal carcinoma, cell line, testis .b 94 to 654 1 to 561       561/631
(88 %)
2 diff
(99.7 %id)
BX279883 brain .b 112 to 588 1 to 477       477/477
(100 %)
0 diff
(100 %id)
BU689532 lung .b 115 to 772 658 to 1       658/658
(100 %)
8 diff
(98.8 %id)
CB141470 Liver .b 228 to 698 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
DB159620 thymus .b 405 to 988 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
AA576409 breast, breast tumor .b 429 to 830 407 to 6       402/407
(98 %)
0 diff
(100 %id)
BG940862 blood .b 460 to 779 325 to 8   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 318/325
(97 %)
0 diff
(100 %id)
DA802666 brain .b 636 to 1181 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB445717 testis .c-u 1 to 421 1 to 421   tiling clone,   421/423
(99 %)
5 diff
(98.9 %id)
BF979742 testis .c-u 22 to 721 1 to 695   fully sequenced,   695/695
(100 %)
14 diff
(98.0 %id)
AK098546 testis .c-u 37 to 1331 1 to 1295 exact tiling clone, available from FLJ,   1295/1295
(100 %)
0 diff
(100 %id)
NM_153216.1   .c-u 37 to 1331 1 to 1295 exact RefSeq,   1295/1295
(100 %)
0 diff
(100 %id)
BP369993 testis .c-u 37 to 591 1 to 555       555/555
(100 %)
11 diff
(98.1 %id)
BI559739 testis .c-u 72 to 896 1 to 824       824/826
(99 %)
13 diff
(98.5 %id)
BC029532 testis .c-u 77 to 1331 1 to 1255 A2D available from MGC, AAA   1255/1255
(100 %)
1 diff
(100.0 %id)
DB451647 testis .c-u 77 to 577 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
TI_44347999   .c-u 77 to 896 93 to 911       819/913
(89 %)
11 diff
(98.8 %id)
TI_1948103843   .c-u 142 to 885 131 to 879       749/1297
(57 %)
23 diff
(98.3 %id)
TI_1948103981   .c-u 142 to 1061 127 to 1054   fully sequenced,   928/1054
(88 %)
36 diff
(96.6 %id)
CV024707 mixed .c-u 149 to 799 1 to 647       647/651
(99 %)
8 diff
(98.8 %id)
TI_1948103567   .c-u 317 to 1062 879 to 126       754/1119
(67 %)
0 diff
(100 %id)
TI_1948103982   .c-u 447 to 1067 748 to 120   fully sequenced,   629/748
(84 %)
15 diff
(98.0 %id)
TI_1948103703   .c-u 498 to 1062 687 to 121       567/1278
(44 %)
0 diff
(100 %id)
BX641019 human uterus .c-u 517 to 6811 1 to 6293   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 6293/6293
(100 %)
7 diff
(99.9 %id)
Z21965 skeletal muscle .c-u 577 to 838 1 to 262       262/262
(100 %)
0 diff
(100 %id)
BF980039 testis .c-u 691 to 1265 684 to 73   fully sequenced,   612/684
(89 %)
61 diff
(91.1 %id)
DB517128 testis .c-u 893 to 1331 1 to 439     Submitted on the opposite strand 439/439
(100 %)
0 diff
(100 %id)
DB510741 testis .c-u 1054 to 1369 1 to 316   AAA Submitted on the opposite strand 316/316
(100 %)
2 diff
(99.4 %id)
AK097970 thymus .c-u 6294 to 8420 1 to 2127   tiling clone, available from FLJ,   2127/2127
(100 %)
2 diff
(100.0 %id)
DB113643 thymus .c-u 6295 to 6897 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
AV761918 bone marrow .c-u 6437 to 6833 1 to 398   tiling clone,   398/503
(79 %)
5 diff
(99.1 %id)
BQ709766 Spleen .c-u 6828 to 7713 1 to 894   tiling clone,   894/927
(96 %)
19 diff
(98.0 %id)
DB343502 thymus .c-u 7906 to 8420 515 to 1       515/515
(100 %)
0 diff
(100 %id)
DC408669 thymus .d 1 to 555 1 to 555   tiling clone,   555/555
(100 %)
0 diff
(100 %id)
BX427891 fetal liver, Liver .d 37 to 981 1 to 942   tiling clone, to resequence,   942/951
(99 %)
5 diff
(99.5 %id)
BX427890 fetal liver, Liver .d 1018 to 1907 891 to 1   tiling clone, to resequence,   891/986
(90 %)
6 diff
(99.4 %id)
NM_001163418.1   .e 1 to 4404 1 to 4404 exact RefSeq,   4404/4404
(100 %)
0 diff
(100 %id)
AK295879 hippocampus .e 52 to 1438 1 to 1390 exact tiling clone,   1390/1390
(100 %)
1 diff
(100.0 %id)
DC336147 hippocampus .e 52 to 629 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC334483 hippocampus .e 91 to 646 1 to 556       556/556
(100 %)
0 diff
(100 %id)
DC320905 brain .e 96 to 563 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
DW457871 Liver .e 166 to 307 18 to 159       142/159
(89 %)
1 diff
(99.4 %id)
AK295127 brain .f 1 to 1352 1 to 1352 N15D tiling clone,   1352/1392
(97 %)
7 diff
(99.5 %id)
DC324758 brain .f 1 to 592 1 to 592       592/592
(100 %)
2 diff
(99.7 %id)
DC374283 brain .f 16 to 591 1 to 576   tiling clone,   576/576
(100 %)
0 diff
(100 %id)
DC333697 hippocampus .f 32 to 540 1 to 508       508/508
(100 %)
2 diff
(99.7 %id)
DB481213 hippocampus .f 69 to 499 1 to 431       431/431
(100 %)
0 diff
(100 %id)
DC318062 amygdala .f 143 to 731 1 to 590       588/590
(99 %)
2 diff
(99.7 %id)
DA807790 brain .f 394 to 986 2 to 599   capped   598/598
(100 %)
6 diff
(99.0 %id)
AL136630 brain .g 1 to 982 9 to 990 E236V tiling clone, available from DKFZ, AAA   986/990
(99 %)
3 diff
(99.7 %id)
DA798808 brain .h 1 to 534 2 to 537   tiling clone, capped   536/536
(100 %)
2 diff
(99.7 %id)
DB130736 thymus .h 504 to 1059 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
NR_028080.1   .i 1 to 4427 1 to 4427 exact RefSeq, tiling clone,   4427/4427
(100 %)
0 diff
(100 %id)
FN172121 breast carcinoma .i 61 to 149 1 to 87       87/89
(97 %)
6 diff
(93.3 %id)
DB480051 hippocampus .i 65 to 259 1 to 195       195/195
(100 %)
0 diff
(100 %id)
BG940863 blood .i 106 to 415 1 to 310       310/398
(77 %)
1 diff
(99.8 %id)
AK297471 brain .i 239 to 1269 1 to 1031 exact     1031/1031
(100 %)
0 diff
(100 %id)
DC352125 brain .i 239 to 799 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DA526489 brain .i 484 to 1056 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
FN096275 breast carcinoma .i 518 to 631 1 to 114       114/114
(100 %)
0 diff
(100 %id)
DB282255 uterus .i 608 to 1151 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA167529 amygdala .i 618 to 1177 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BQ720126 sympathetic trunk .i 714 to 1551 1 to 850       850/953
(89 %)
20 diff
(98.0 %id)
CN289941 embryonic stem cells, DMSO-treated H9 cellline .i 729 to 1186 1 to 459       459/461
(99 %)
3 diff
(99.4 %id)
DA472431   .i 843 to 1381 2 to 543   capped   542/543
(99 %)
2 diff
(99.7 %id)
DB161301 thymus .i 846 to 1411 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BI909147 leukocyte .i 861 to 1628 1 to 778       778/869
(89 %)
16 diff
(98.2 %id)
TI_57236711   .i 861 to 1628 31 to 808       778/899
(86 %)
22 diff
(97.6 %id)
DA995031 synovial membrane tissue from rheumatioidarthritis .i 950 to 1481 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BM463668 leiomyosarcoma, uterus .i 1014 to 1864 79 to 940       862/1038
(83 %)
32 diff
(97.0 %id)
BG209859   .i 1021 to 1782 1 to 758       758/766
(98 %)
20 diff
(97.4 %id)
DA149217 amygdala .i 1060 to 1536 2 to 479   capped   478/480
(99 %)
2 diff
(99.6 %id)
BU160451 melanotic melanoma, skin .i 1093 to 1775 1 to 696       696/960
(72 %)
29 diff
(97.0 %id)
AW977952   .i 1167 to 1749 584 to 1     Submitted on the opposite strand 584/584
(100 %)
27 diff
(95.4 %id)
BP339019 Spleen .i 1267 to 1745 1 to 477       477/583
(81 %)
15 diff
(97.5 %id)
DB568683 hypothalamus .i 1292 to 1793 1 to 504     Submitted on the opposite strand 504/504
(100 %)
3 diff
(99.5 %id)
BE535982 cervix .i 1298 to 1870 1 to 570       570/833
(68 %)
51 diff
(93.9 %id)
AA811351 germinal center B cell .i 1314 to 1804 494 to 1       494/494
(100 %)
12 diff
(97.6 %id)
BC012007 Testis, embryonal carcinoma .i 1318 to 2817 1 to 1503   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1503/1503
(100 %)
2 diff
(99.9 %id)
BG392222 embryonal carcinoma, cell line, testis .i 1319 to 1924 1 to 610   available from MGC,   610/610
(100 %)
12 diff
(98.1 %id)
AA806375 germinal center B cell .i 1320 to 1804 486 to 1       486/486
(100 %)
13 diff
(97.4 %id)
AI017211 pooled .i 1347 to 1795 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AA938719 germinal center B cell .i 1408 to 1804 398 to 1       398/398
(100 %)
7 diff
(98.3 %id)
AA770478 pooled .i 1437 to 1769 334 to 1       334/334
(100 %)
6 diff
(98.3 %id)
AW628639 pooled .i 1485 to 1795 314 to 1       314/314
(100 %)
3 diff
(99.1 %id)
DB267194 uterus .i 1562 to 2150 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA298042 hippocampus .i 1599 to 2175 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
BX371535 Placenta Cot 25-normalized .i 1623 to 2522 909 to 18       892/910
(98 %)
0 diff
(100 %id)
AL134467 brain .i 1631 to 2223 1 to 593       593/593
(100 %)
0 diff
(100 %id)
CA389793 eye, RPE/choroid .i 1649 to 2175 1 to 527       527/527
(100 %)
8 diff
(98.5 %id)
BF845188 head_neck .i 1673 to 2198 526 to 3     Submitted on the opposite strand 524/526
(99 %)
0 diff
(100 %id)
AI224844 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 1728 to 2181 454 to 1       454/454
(100 %)
0 diff
(100 %id)
BQ271435 Pancreas, Purified pancreatic islet .i 1739 to 2139 1 to 400       400/400
(100 %)
6 diff
(98.5 %id)
BP290594 lung .i 1757 to 2123 1 to 365       365/554
(65 %)
10 diff
(98.2 %id)
BP293839 lung .i 1829 to 2389 1 to 561       561/561
(100 %)
4 diff
(99.3 %id)
AI350662   .i 2070 to 2370 301 to 1       301/303
(99 %)
0 diff
(100 %id)
T73764 Liver .i 2118 to 2429 1 to 316       316/316
(100 %)
8 diff
(97.5 %id)
T73757 Liver .i 2127 to 2447 14 to 344       331/344
(96 %)
5 diff
(98.6 %id)
FN060608 breast carcinoma .i 2128 to 2246 1 to 113       113/113
(100 %)
5 diff
(95.6 %id)
FN061491 breast carcinoma .i 2409 to 2522 1 to 114       114/115
(99 %)
1 diff
(99.2 %id)
FN081462 breast carcinoma .i 2409 to 2522 1 to 113       113/114
(99 %)
4 diff
(96.5 %id)
DB314788   .i 2722 to 3261 542 to 1       542/542
(100 %)
4 diff
(99.3 %id)
CR992522 T-Lymphocytes .j 1 to 879 1 to 878 C231X tiling clone,   878/878
(100 %)
4 diff
(99.6 %id)
DC367836   .k 1 to 561 1 to 561 exact tiling clone,   561/561
(100 %)
0 diff
(100 %id)
TI_154111319   .l 1 to 755 767 to 13 G3V S4L P5L E6K E7N ... tiling clone,   755/1001
(75 %)
2 diff
(99.9 %id)
BX425619 neuroblastoma .m 1 to 1003 1 to 1002 P59H F60L V61F F62L N63T ... tiling clone,   1002/1002
(100 %)
4 diff
(99.7 %id)
C21572   .m 207 to 491 1 to 287       287/334
(85 %)
4 diff
(98.9 %id)
DA073417 cerebellum .n-u 1 to 555 2 to 556 S99P tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
AK296683 tongue, tumor tissue .o 1 to 901 1 to 901 exact tiling clone,   901/901
(100 %)
0 diff
(100 %id)
DC345414 tongue, tumor tissue .o 1 to 516 1 to 516       516/516
(100 %)
0 diff
(100 %id)
CD692442 normal nasopharynx .p 1 to 334 1 to 336   tiling clone,   336/336
(100 %)
3 diff
(99.2 %id)
DC322045 brain .p 86 to 451 1 to 365   tiling clone,   365/365
(100 %)
1 diff
(99.8 %id)
AV749691 Pituitary .p 100 to 447 1 to 339   tiling clone,   339/343
(98 %)
11 diff
(96.8 %id)
BQ428058 leiomyosarcoma, uterus .q 1 to 567 1 to 575 E73V R74Q T75R P76T S77P ... tiling clone,   571/944
(60 %)
25 diff
(97.4 %id)
DA521461 brain .q 105 to 656 2 to 553 exact capped   552/552
(100 %)
0 diff
(100 %id)
BI601121 brain, hypothalamus .q 109 to 874 1 to 764 exact     764/981
(77 %)
11 diff
(98.9 %id)
DA526835 brain .q 113 to 688 2 to 580 E73V R74E T75R P76T S77P ... capped   579/579
(100 %)
2 diff
(99.7 %id)
DB489489 hypothalamus .q 113 to 578 1 to 468 Q30S L31S P32L E33K A34P ...     468/468
(100 %)
7 diff
(98.6 %id)
DB497583 hypothalamus .q 113 to 623 1 to 511 exact     511/511
(100 %)
1 diff
(99.9 %id)
DA193169 amygdala .q 114 to 619 2 to 507 exact capped   506/506
(100 %)
0 diff
(100 %id)
TI_45214245   .q 115 to 874 87 to 844 exact     758/1061
(71 %)
15 diff
(98.6 %id)
BM801927 duodenal adenocarcinoma, cell line, small intestine .q 128 to 928 1 to 811 exact tiling clone,   811/989
(82 %)
9 diff
(99.1 %id)
DB483091 hippocampus .q 130 to 617 1 to 488 exact     488/488
(100 %)
1 diff
(99.8 %id)
BM555117 duodenal adenocarcinoma, cell line, small intestine .q 134 to 1126 1 to 1021 exact     1021/1064
(95 %)
40 diff
(96.3 %id)
DA709749   .q 144 to 695 2 to 557 H3A R4P P5D S6R R7H ... capped   556/556
(100 %)
8 diff
(98.6 %id)
DA146073 amygdala .q 147 to 694 2 to 550 exact capped   549/549
(100 %)
1 diff
(99.9 %id)
AL545682 placenta, Placenta Cot 25-normalized .q 149 to 1177 1 to 1023 A8X E13X Y17* tiling clone,   1023/1118
(91 %)
25 diff
(97.8 %id)
AK309742   .q 172 to 1152 1 to 980 exact tiling clone,   980/980
(100 %)
1 diff
(99.9 %id)
DA758305   .q 173 to 714 2 to 543 exact capped   542/542
(100 %)
0 diff
(100 %id)
BE780096 eye, retinoblastoma .q 197 to 413 1 to 218       218/218
(100 %)
4 diff
(98.2 %id)
TI_57240033   .q 202 to 912 28 to 739 exact     712/739
(96 %)
6 diff
(99.2 %id)
BI916568 brain .q 206 to 912 1 to 707 exact     707/707
(100 %)
0 diff
(100 %id)
DW417599 Liver .r 1 to 287 19 to 305 exact tiling clone,   288/305
(94 %)
1 diff
(99.7 %id)
BX642263   .s 1 to 723 1 to 724 exact tiling clone,   724/724
(100 %)
2 diff
(99.8 %id)
AL708240 human skeletal muscle .t 1 to 638 1 to 640 exact tiling clone,   640/640
(100 %)
5 diff
(99.3 %id)
DC376817 brain .u 1 to 564 4 to 568 V59C V60C R61Q A62G G63R ... tiling clone,   568/568
(100 %)
2 diff
(99.7 %id)
DC376842 brain .u 1 to 535 4 to 539       539/539
(100 %)
2 diff
(99.7 %id)
CV348836 head_neck .va-u 1 to 537 1 to 536 C18A R20G V21S S22Q A23Q ... tiling clone,   536/536
(100 %)
8 diff
(98.6 %id)
DB472604 hippocampus .vb 1 to 485 1 to 485 exact tiling clone,   485/485
(100 %)
0 diff
(100 %id)
DB464528.
matches multiple genes
hippocampus .vc 1 to 433 1 to 438 P6G R7E V10S I11*   also hits gene shysnubu 438/438
(100 %)
15 diff
(96.6 %id)
DB467479 hippocampus .vc 1 to 461 1 to 458 E53S L54S F55L N56I F57L ... tiling clone,   458/476
(96 %)
10 diff
(97.9 %id)
DB481268 hippocampus .vc 1 to 438 1 to 438 exact tiling clone,   438/438
(100 %)
1 diff
(99.8 %id)
DB465209 hippocampus .vc 26 to 434 1 to 411       411/411
(100 %)
7 diff
(98.3 %id)
DB449260.
matches multiple genes
testis .vc 58 to 371 1 to 320   AAA also hits gene flawsnubu 320/320
(100 %)
8 diff
(97.5 %id)
AA328689   Gene FAM172AandPOU5F2, variant not shown              
AA333100 Embryo, 8 weeks Gene FAM172AandPOU5F2, variant not shown              
AV709489 adrenal gland Gene FAM172AandPOU5F2, variant not shown         Suspected internal deletion, this clone was ignored    
AF070617 brain Gene FAM172AandPOU5F2, variant not shown       AAA      
AW956055   Gene FAM172AandPOU5F2, variant not shown              
AW958085   Gene FAM172AandPOU5F2, variant not shown              
AW961395   Gene FAM172AandPOU5F2, variant not shown              
BX107074 parathyroid gland, parathyroid tumor Gene FAM172AandPOU5F2, variant not shown              
CR605117 Placenta Cot 25-normalized Gene FAM172AandPOU5F2, variant not shown              
CR743651   Gene FAM172AandPOU5F2, variant not shown              
AL571301 placenta, Placenta Cot 25-normalized Gene FAM172AandPOU5F2, variant not shown              
AL599880   Gene FAM172AandPOU5F2, variant not shown              
AL599881   Gene FAM172AandPOU5F2, variant not shown              
AL042965 testis Gene FAM172AandPOU5F2, variant not shown              
AL036489 brain Gene FAM172AandPOU5F2, variant not shown         This clone was ignored    
AL036490 brain Gene FAM172AandPOU5F2, variant not shown         This clone was ignored    
AL353958 amygdala Gene FAM172AandPOU5F2, variant not shown              
AL353959 amygdala Gene FAM172AandPOU5F2, variant not shown              
FN062412 breast carcinoma Gene FAM172AandPOU5F2, variant not shown              
DB528416 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB528631 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB530511 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB531747 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB534490 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB541362 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB541549 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB542014 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB548782 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB550084 hippocampus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
DB551975 hippocampus Gene FAM172AandPOU5F2, variant not shown       AAA Submitted on the opposite strand    
DB558872 hypothalamus Gene FAM172AandPOU5F2, variant not shown       AAA Submitted on the opposite strand    
DB559027 hypothalamus Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
BP396221 pancreatic islet Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
BP257215 heart Gene FAM172AandPOU5F2, variant not shown              
BP398089 pancreatic islet Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
T80494 whole brain Gene FAM172AandPOU5F2, variant not shown              
R38851 whole brain Gene FAM172AandPOU5F2, variant not shown       AAA      
H12050 whole brain Gene FAM172AandPOU5F2, variant not shown              
H12051 whole brain Gene FAM172AandPOU5F2, variant not shown       AAA      
H38443 brain Gene FAM172AandPOU5F2, variant not shown              
H38477 brain Gene FAM172AandPOU5F2, variant not shown              
H99444 melanocyte Gene FAM172AandPOU5F2, variant not shown              
H99445 melanocyte Gene FAM172AandPOU5F2, variant not shown              
N63467 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
N94760 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
N63477 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
N94775 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
N62933 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
W01193 multiple sclerosis lesions Gene FAM172AandPOU5F2, variant not shown              
W16500 lung Gene FAM172AandPOU5F2, variant not shown              
W15296 parathyroid gland, parathyroid tumor Gene FAM172AandPOU5F2, variant not shown              
W39313 parathyroid gland, parathyroid tumor Gene FAM172AandPOU5F2, variant not shown              
AA129634 lung, lung carcinoma Gene FAM172AandPOU5F2, variant not shown              
AA133896 lung, lung carcinoma Gene FAM172AandPOU5F2, variant not shown              
AA522762 metastatic prostate bone lesion Gene FAM172AandPOU5F2, variant not shown              
AA603316 normal prostate, Prostate Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
AA639221 Ewing's sarcoma Gene FAM172AandPOU5F2, variant not shown              
AA731904 germinal center B cell Gene FAM172AandPOU5F2, variant not shown       AAA      
AA729720 alveolar rhabdomyosarcoma Gene FAM172AandPOU5F2, variant not shown              
AA903812 leiomyosarcoma, soft tissue Gene FAM172AandPOU5F2, variant not shown              
AA912410 pooled Gene FAM172AandPOU5F2, variant not shown              
AA939280 pooled germ cell tumors Gene FAM172AandPOU5F2, variant not shown              
AA947660 pooled germ cell tumors Gene FAM172AandPOU5F2, variant not shown              
AI051733   Gene FAM172AandPOU5F2, variant not shown              
AI095685 uterus Gene FAM172AandPOU5F2, variant not shown       AAA      
AI095910 uterus Gene FAM172AandPOU5F2, variant not shown       AAA      
AI139910   Gene FAM172AandPOU5F2, variant not shown              
AI200153 placenta Gene FAM172AandPOU5F2, variant not shown              
AI868466 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene FAM172AandPOU5F2, variant not shown              
AI868565 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene FAM172AandPOU5F2, variant not shown              
AI434236 lymph node, lymphoma, follicular mixed small and largecell Gene FAM172AandPOU5F2, variant not shown              
AI554298 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus Gene FAM172AandPOU5F2, variant not shown              
AI637652 pooled germ cell tumors Gene FAM172AandPOU5F2, variant not shown              
AI685452 Prostate Gene FAM172AandPOU5F2, variant not shown       AAA      
AI675508 Prostate Gene FAM172AandPOU5F2, variant not shown              
AI808271 pooled Gene FAM172AandPOU5F2, variant not shown              
AI888506 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene FAM172AandPOU5F2, variant not shown              
AI927701 Kidney Gene FAM172AandPOU5F2, variant not shown              
AW022679 cochlea, ear Gene FAM172AandPOU5F2, variant not shown              
AI983620 adenocarcinoma, Pancreas Gene FAM172AandPOU5F2, variant not shown              
AW015345   Gene FAM172AandPOU5F2, variant not shown              
AW473080 lymph node, lymphoma, follicular mixed small and largecell Gene FAM172AandPOU5F2, variant not shown       AAA      
AW518893 adenocarcinoma, Pancreas Gene FAM172AandPOU5F2, variant not shown              
AW594592 pooled germ cell tumors Gene FAM172AandPOU5F2, variant not shown              
AW772138 Kidney Gene FAM172AandPOU5F2, variant not shown              
CF134892 CNCAP(3)T-225 cell line, Prostate Gene FAM172AandPOU5F2, variant not shown              
CB052433 leiomyosarcoma, soft tissue Gene FAM172AandPOU5F2, variant not shown              
CB052434 leiomyosarcoma, soft tissue Gene FAM172AandPOU5F2, variant not shown              
CB054071 brain, glioblastoma (pooled) Gene FAM172AandPOU5F2, variant not shown       fully sequenced, AAA      
CB054072 brain, glioblastoma (pooled) Gene FAM172AandPOU5F2, variant not shown       fully sequenced,      
BF445124 carcinoid, lung Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
BG054651 Kidney Gene FAM172AandPOU5F2, variant not shown       AAA      
BF434875 Kidney Gene FAM172AandPOU5F2, variant not shown              
BF223631 carcinoid, lung Gene FAM172AandPOU5F2, variant not shown              
BE620151 large cell carcinoma, undifferentiated, lung Gene FAM172AandPOU5F2, variant not shown              
BE620579 large cell carcinoma, undifferentiated, lung Gene FAM172AandPOU5F2, variant not shown              
BF984760 duodenal adenocarcinoma, cell line, small intestine Gene FAM172AandPOU5F2, variant not shown              
BG118787 adenocarcinoma, cell line, Liver Gene FAM172AandPOU5F2, variant not shown       AAA      
BG431121 Kidney Gene FAM172AandPOU5F2, variant not shown              
BM995314 Chondrosarcoma, Left Pubic Bone Gene FAM172AandPOU5F2, variant not shown       AAA      
BQ014673 Chondrosarcoma, Left Pubic Bone Gene FAM172AandPOU5F2, variant not shown       AAA      
BQ002473 Chondrosarcoma, Left Pelvis Gene FAM172AandPOU5F2, variant not shown       AAA      
CB215800 normal endometrium, late proliferativephase, cycle day 13, uterus Gene FAM172AandPOU5F2, variant not shown              
BQ632481 Pancreas, Purified pancreatic islet Gene FAM172AandPOU5F2, variant not shown              
BQ632770 Pancreas, Purified pancreatic islet Gene FAM172AandPOU5F2, variant not shown              
BQ929402 leiomyosarcoma, uterus Gene FAM172AandPOU5F2, variant not shown              
BU536542 mixed (pool of 40 RNAs) Gene FAM172AandPOU5F2, variant not shown       AAA      
BP289213 lung Gene FAM172AandPOU5F2, variant not shown              
AV746857 Pituitary Gene FAM172AandPOU5F2, variant not shown              
DB374047 placenta Gene FAM172AandPOU5F2, variant not shown              
DB375355 placenta Gene FAM172AandPOU5F2, variant not shown              
DA830264 placenta Gene FAM172AandPOU5F2, variant not shown       capped      
BM789633 stomach Gene FAM172AandPOU5F2, variant not shown              
BP343069 stomach mucosa Gene FAM172AandPOU5F2, variant not shown              
BM145006 leukopheresis Gene FAM172AandPOU5F2, variant not shown              
TI_149302125   Gene FAM172AandPOU5F2, variant not shown       AAA      
TI_149305356   Gene FAM172AandPOU5F2, variant not shown              
TI_149310934   Gene FAM172AandPOU5F2, variant not shown       AAA      
TI_154162999   Gene FAM172AandPOU5F2, variant not shown              
BU685633 lung, Primary Lung Epithelial Cells Gene FAM172AandPOU5F2, variant not shown              
BU689105 lung Gene FAM172AandPOU5F2, variant not shown       AAA      
BM980381 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene FAM172AandPOU5F2, variant not shown       AAA      
CA313260 Human Lung Epithelial cells, lung Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
CA314421 Human Lung Epithelial cells, lung Gene FAM172AandPOU5F2, variant not shown       AAA Submitted on the opposite strand    
CA503121 Human Lung Epithelial cells, lung Gene FAM172AandPOU5F2, variant not shown       AAA Submitted on the opposite strand    
CB242911 Human Lung Epithelial cells, lung Gene FAM172AandPOU5F2, variant not shown       AAA      
BM676590 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown       fully sequenced, AAA      
BM714214 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown       fully sequenced,      
BQ185662 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
BQ188207 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown         Submitted on the opposite strand    
BQ186863 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown       AAA      
CK299965 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene FAM172AandPOU5F2, variant not shown              
TI_151753615   Gene FAM172AandPOU5F2, variant not shown              
Z19775   Gene FAM172AandPOU5F2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p, .q, .r, .s, .t, .u, .va-u, .vb, .vc Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC