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Gene C3orf20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
47 supporting clones for gene C3orf20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_032137.4   .a 1 to 3326 2 to 3327 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3327/3327
(100 %)
0 diff
(100 %id)
DB064418 testis .a 1 to 585 2 to 587   tiling clone, capped   586/586
(100 %)
3 diff
(99.5 %id)
DB098876 testis .a 44 to 624 2 to 583   capped   582/585
(99 %)
3 diff
(99.5 %id)
AL834386 testis .a 48 to 3324 1 to 3277 A298T I407V L422V tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3277/3277
(100 %)
4 diff
(99.9 %id)
BC038406 Brain, adult medulla .a 80 to 3326 1 to 3247 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3247/3247
(100 %)
1 diff
(100.0 %id)
BI832014 brain, medulla .a 129 to 920 46 to 833       788/833
(94 %)
19 diff
(97.8 %id)
TI_57173497   .a 129 to 920 46 to 833       788/833
(94 %)
19 diff
(97.8 %id)
NM_001184958.1   .b 1 to 2929 2 to 2930 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2930/2930
(100 %)
0 diff
(100 %id)
BG718869 testis .b 37 to 805 1 to 770   tiling clone,   767/777
(98 %)
16 diff
(98.0 %id)
BC030599 testis .b 42 to 2898 1 to 2857 S108Y A176T I285V L300V tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2857/2857
(100 %)
5 diff
(99.9 %id)
TI_1948238208   .b 420 to 1447 139 to 1171       1033/1284
(80 %)
35 diff
(97.3 %id)
TI_1948238209   .b 420 to 1224 136 to 944       809/1312
(61 %)
19 diff
(98.6 %id)
TI_1948238236   .b 420 to 1467 132 to 1175   tiling clone,   1044/1343
(77 %)
29 diff
(97.9 %id)
TI_1948238237   .b 420 to 1220 130 to 936       807/1317
(61 %)
30 diff
(97.8 %id)
TI_1948238474   .b 420 to 1488 125 to 1188       1013/1408
(71 %)
41 diff
(97.1 %id)
TI_1948238475   .b 420 to 1217 132 to 943       812/1365
(59 %)
24 diff
(98.3 %id)
TI_1948238710   .b 420 to 1489 133 to 1183       1051/1360
(77 %)
42 diff
(97.0 %id)
TI_1948238711   .b 420 to 1224 135 to 938       804/1345
(59 %)
16 diff
(98.9 %id)
TI_1948238946   .b 420 to 1489 125 to 1187   tiling clone,   1063/1393
(76 %)
39 diff
(97.3 %id)
TI_1948238947   .b 420 to 1220 131 to 933       803/1316
(61 %)
11 diff
(99.2 %id)
EL733649 mixed .b 421 to 1067 1 to 647       647/647
(100 %)
0 diff
(100 %id)
TI_1948238210   .b 1744 to 2768 1147 to 129       1019/1290
(78 %)
42 diff
(96.8 %id)
TI_1948238948   .b 1744 to 2768 1153 to 122       1032/1237
(83 %)
46 diff
(96.3 %id)
TI_1948238239   .b 1750 to 2768 1149 to 129       1021/1214
(84 %)
36 diff
(97.1 %id)
TI_1948238713   .b 1986 to 2768 914 to 130       785/1222
(64 %)
15 diff
(98.8 %id)
TI_1948238238   .b 1989 to 2768 907 to 127       781/1242
(62 %)
8 diff
(99.4 %id)
TI_1948238476   .b 1989 to 2768 900 to 122       779/1275
(61 %)
35 diff
(97.3 %id)
TI_1948238477   .b 1992 to 2768 904 to 130       775/1227
(63 %)
13 diff
(99.0 %id)
TI_1948238949   .b 1992 to 2768 909 to 130       780/1238
(63 %)
4 diff
(99.7 %id)
NM_001184957.1   .c 1 to 2824 2 to 2825 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2825/2825
(100 %)
0 diff
(100 %id)
AL136781 testis .c 80 to 2822 1 to 2743 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2743/2743
(100 %)
0 diff
(100 %id)
AK131481 testis .d 1 to 4115 2 to 4120 exact tiling clone, available from FLJ,   4116/4120
(99 %)
3 diff
(100.0 %id)
DB089966 testis .d 1 to 556 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB081047 testis .d 2 to 579 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB341347 testis .d 3572 to 4115 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
BI544667 brain, hippocampus .e 1 to 841 1 to 844 T2E C66V Q67K E68R K70R ... tiling clone,   843/846
(99 %)
29 diff
(96.6 %id)
TI_44001076   .e 6 to 841 84 to 922       838/924
(90 %)
30 diff
(96.8 %id)
BI831619 brain, medulla .f 1 to 714 1 to 709 L7Y C8A S9R L10G A11S ... tiling clone,   709/711
(99 %)
12 diff
(98.4 %id)
TI_57172368   .f 1 to 714 30 to 738 L7Y C8A S9R L10G A11S ...     709/740
(95 %)
14 diff
(98.2 %id)
AV728682 hypothalamus .g-u 1 to 512 9 to 520 exact tiling clone,   512/520
(98 %)
6 diff
(98.9 %id)
AA486119 lung .g-u 95 to 353 1 to 257 K10T Q11V L12M C13L S14V ... fully sequenced,   257/257
(100 %)
1 diff
(99.7 %id)
BU734887 eye, lens .g-u 132 to 664 551 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 533/533
(100 %)
0 diff
(100 %id)
AA486059 lung .g-u 323 to 665 342 to 1   fully sequenced,   342/342
(100 %)
1 diff
(99.8 %id)
AW978738   Gene C3orf20, variant not shown         Submitted on the opposite strand    
T84617 liver and spleen Gene C3orf20, variant not shown       fully sequenced,      
T91391 liver and spleen Gene C3orf20, variant not shown       fully sequenced,      
AA236021 germinal center B cell Gene C3orf20, variant not shown              
AA236089 germinal center B cell Gene C3orf20, variant not shown              
AW299806 Kidney Gene C3orf20, variant not shown       AAA      
AW299816 Kidney Gene C3orf20, variant not shown       AAA      
TI_1948238712   Gene C3orf20, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C