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Gene CCDC21TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
315 supporting clones for gene CCDC21 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB079544 testis .a 1 to 578 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
DB071828 testis .a 6 to 554 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB063519 testis .a 12 to 550 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB063533 testis .a 12 to 558 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
AL705660 human skeletal muscle .a 15 to 319 1 to 305       305/305
(100 %)
2 diff
(99.4 %id)
DB077533 testis .a 22 to 586 2 to 566   capped   565/565
(100 %)
5 diff
(99.2 %id)
DA194062 amygdala .a 23 to 596 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB063725 testis .a 23 to 564 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA296389 hippocampus .a 26 to 578 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA414468 thalamus .a 26 to 594 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA723327   .a 26 to 601 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BM194307 leukopheresis .a 26 to 530 1 to 505       505/505
(100 %)
1 diff
(99.9 %id)
DB065227 testis .a 26 to 523 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DB240273 trachea .a 26 to 609 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB241437 trachea .a 26 to 618 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DB281869 uterus .a 26 to 570 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA388065 thalamus .a 28 to 612 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA526538 brain .a 28 to 594 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB023387 testis .a 28 to 566 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB065259 testis .a 28 to 572 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB066093 testis .a 28 to 566 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB066474 testis .a 28 to 565 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DB099076 testis .a 28 to 611 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CN310332 embryonic stem cells, DMSO-treated H9 cellline .a 29 to 824 1 to 796       796/796
(100 %)
3 diff
(99.7 %id)
DA081654 cerebellum .a 40 to 601 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB450503 testis .a 44 to 479 1 to 438       438/438
(100 %)
7 diff
(98.5 %id)
BG771651 testis .a 47 to 855 1 to 814       814/818
(99 %)
23 diff
(97.2 %id)
DB064079 testis .a 47 to 588 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
BP245962 Kidney .a 48 to 634 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
BP246794 Kidney .a 48 to 629 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP872922 embryonal kidney .a 48 to 355 1 to 308       308/333
(92 %)
8 diff
(97.6 %id)
BP280802   .a 48 to 629 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP281786 bone marrow .a 48 to 629 1 to 582       582/587
(99 %)
17 diff
(97.2 %id)
BP282289 bone marrow .a 48 to 629 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP334765 salivary gland .a 48 to 615 1 to 568       568/568
(100 %)
8 diff
(98.6 %id)
DA026539   .a 49 to 252 2 to 205   capped   204/204
(100 %)
0 diff
(100 %id)
DA045251 bladder .a 49 to 605 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA095213 cerebellum .a 49 to 625 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA098611 cerebellum .a 49 to 594 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA113006 cerebellum .a 49 to 615 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA166254 amygdala .a 49 to 615 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA195235 amygdala .a 49 to 607 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA212152 brain .a 49 to 584 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA219285 brain .a 49 to 598 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA219964 brain .a 49 to 610 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA233750 brain .a 49 to 623 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA313095 hippocampus .a 49 to 588 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA316279 hippocampus .a 49 to 586 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA318256 hippocampus .a 49 to 616 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA320946 hippocampus .a 49 to 603 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA328162 hippocampus .a 49 to 656 2 to 609   capped   608/608
(100 %)
2 diff
(99.7 %id)
DA329687 hippocampus .a 49 to 533 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DA331967 hippocampus .a 49 to 638 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA332819 hippocampus .a 49 to 638 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA335169 hippocampus .a 49 to 630 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA339271 hippocampus .a 49 to 640 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA370862 thalamus .a 49 to 611 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA407860 thalamus .a 49 to 587 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA409493 thalamus .a 49 to 594 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA417672 thalamus .a 49 to 593 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DA433693 tongue, tumor tissue .a 49 to 762 2 to 714   capped   713/714
(99 %)
2 diff
(99.8 %id)
DA442317 tongue, tumor tissue .a 49 to 630 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA459785 tongue, tumor tissue .a 49 to 477 2 to 430   capped   429/429
(100 %)
1 diff
(99.8 %id)
DA667185   .a 49 to 603 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA714425   .a 49 to 581 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA720097   .a 49 to 615 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA722646   .a 49 to 613 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA723474   .a 49 to 636 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA740495   .a 49 to 603 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA756523   .a 49 to 603 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA756780   .a 49 to 588 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA759001   .a 49 to 514 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DA759020   .a 49 to 559 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA759845   .a 49 to 586 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA760015   .a 49 to 581 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA760041   .a 49 to 583 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DA797174 brain .a 49 to 611 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA804540 brain .a 49 to 601 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB011389 colon, tumor tissue .a 49 to 633 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB061044 testis .a 49 to 581 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB062200 testis .a 49 to 578 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB063091 testis .a 49 to 603 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB063649 testis .a 49 to 586 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DB063955 testis .a 49 to 613 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB064665 testis .a 49 to 580 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DB066060 testis .a 49 to 587 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB067148 testis .a 49 to 578 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB067316 testis .a 49 to 586 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DB068168 testis .a 49 to 579 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DB072235 testis .a 49 to 571 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DB073724 testis .a 49 to 599 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB077481 testis .a 49 to 599 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB080999 testis .a 49 to 612 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB081823 testis .a 49 to 598 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB082258 testis .a 49 to 606 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB082616 testis .a 49 to 604 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB083221 testis .a 49 to 598 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB088786 testis .a 49 to 587 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DB095316 testis .a 49 to 587 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DB099467 testis .a 49 to 621 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB156281 thymus .a 49 to 581 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
BP363154 lung .a 49 to 638 1 to 590       590/592
(99 %)
1 diff
(99.9 %id)
DB220877 trachea .a 49 to 426 2 to 380   capped   379/379
(100 %)
3 diff
(99.3 %id)
DB224126 trachea .a 49 to 629 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB224204 trachea .a 49 to 642 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DB236450 trachea .a 49 to 607 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB249960 uterus .a 49 to 586 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BC064528 Testis, embryonal carcinoma .a 50 to 3984 1 to 3935 exact tiling clone, available from MGC, AAA   3935/3935
(100 %)
1 diff
(100.0 %id)
DW432200 Liver .a 50 to 298 18 to 266       249/266
(93 %)
11 diff
(95.9 %id)
NM_022778.2   .a 50 to 3984 1 to 3935 exact RefSeq, AAA   3935/3935
(100 %)
1 diff
(100.0 %id)
BM463361 embryonal carcinoma, cell line, testis .a 51 to 932 1 to 885       885/984
(89 %)
17 diff
(98.3 %id)
BQ439379 embryonal carcinoma, cell line, testis .a 51 to 938 1 to 886       886/889
(99 %)
15 diff
(98.4 %id)
DA807056 brain .a 51 to 621 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA860295 placenta .a 51 to 601 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB289416 uterus .a 51 to 626 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP284361 bone marrow .a 52 to 639 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DA112692 cerebellum .a 53 to 641 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA112737 cerebellum .a 53 to 644 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DA991799 synovial membrane tissue from rheumatioidarthritis .a 53 to 614 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB062171 testis .a 53 to 583 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DB082411 testis .a 53 to 623 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB140727 thymus .a 53 to 596 2 to 545   capped   544/544
(100 %)
3 diff
(99.5 %id)
DB154037 thymus .a 53 to 651 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DB155994 thymus .a 53 to 648 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DB160987 thymus .a 53 to 626 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA390958 thalamus .a 54 to 648 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA721406   .a 54 to 546 2 to 499   capped   498/498
(100 %)
8 diff
(98.4 %id)
BG771808 testis .a 57 to 879 1 to 818       818/854
(95 %)
24 diff
(97.2 %id)
DB451726 testis .a 59 to 554 1 to 497       497/497
(100 %)
9 diff
(98.2 %id)
DA755604   .a 59 to 598 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DA319615 hippocampus .a 60 to 603 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA758691   .a 60 to 605 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB238668 trachea .a 60 to 640 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB238674 trachea .a 60 to 631 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BG724304 testis .a 62 to 685 1 to 626       626/626
(100 %)
13 diff
(98.0 %id)
BP309488 brain .a 62 to 643 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BM788706 stomach .a 62 to 672 1 to 610       610/610
(100 %)
1 diff
(99.9 %id)
DA445529 tongue, tumor tissue .a 63 to 639 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA801872 brain .a 63 to 546 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DA859104 placenta .a 63 to 643 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB093764 testis .a 63 to 628 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB197525 trachea .a 63 to 623 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB233481 trachea .a 63 to 637 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB289177 uterus .a 63 to 632 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BP873547 embryonal kidney .a 66 to 354 1 to 289       289/290
(99 %)
6 diff
(98.0 %id)
DA240878 brain .a 67 to 649 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA336673 hippocampus .a 67 to 659 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DB100608 testis .a 67 to 666 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DA093028 cerebellum .a 68 to 579 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA315653 hippocampus .a 68 to 601 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DB073891 testis .a 68 to 596 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DB080276 testis .a 68 to 640 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB090354 testis .a 68 to 627 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB155601 thymus .a 68 to 651 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DN995586 breast cancer, Mammary gland (cancer tissue) .a 69 to 689 6 to 626       621/626
(99 %)
8 diff
(98.8 %id)
CB988010 Human Placenta, placenta .a 70 to 772 28 to 739       712/798
(89 %)
19 diff
(97.7 %id)
BQ216920 embryonal carcinoma, cell line, testis .a 71 to 827 1 to 760       760/859
(88 %)
9 diff
(99.0 %id)
BM194218 leukopheresis .a 75 to 287 1 to 213       213/213
(100 %)
9 diff
(95.8 %id)
BM193857 leukopheresis .a 75 to 424 1 to 350       350/350
(100 %)
10 diff
(97.2 %id)
BQ643284 lymph, lymphoma, cell line .a 78 to 981 1 to 912       912/935
(97 %)
27 diff
(97.2 %id)
DB081530 testis .a 78 to 533 2 to 457   capped   456/456
(100 %)
1 diff
(99.8 %id)
DA760152   .a 84 to 620 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
CN310333 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 94 to 769 1 to 675       675/675
(100 %)
1 diff
(99.9 %id)
CN310330 embryonic stem cells, cell lines H1, H7, andH9 .a 194 to 542 1 to 349       349/349
(100 %)
2 diff
(99.5 %id)
DW415258 Liver .a 210 to 508 15 to 313       299/313
(95 %)
6 diff
(98.1 %id)
DW421483 Liver .a 210 to 492 15 to 297       283/297
(95 %)
6 diff
(98.0 %id)
DA755443   .a 239 to 776 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DB071372 testis .a 256 to 775 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
BE536405 cervix .a 331 to 1043 1 to 730       701/927
(75 %)
25 diff
(97.4 %id)
DA220290 brain .a 377 to 935 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
AJ708115 heart .a 441 to 974 1 to 534       534/534
(100 %)
0 diff
(100 %id)
DA237634 brain .a 453 to 1029 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA457831 tongue, tumor tissue .a 623 to 1191 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA256015 caudate nucleus .a 625 to 1191 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BP219344 caudate nucleus .a 652 to 1233 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BF891864 marrow .a 681 to 1090 1 to 426       426/479
(88 %)
33 diff
(93.2 %id)
BI000693 head_normal .a 683 to 904 220 to 2       219/224
(97 %)
0 diff
(100 %id)
BE162404 head_neck .a 687 to 1050 363 to 1     Submitted on the opposite strand 363/363
(100 %)
8 diff
(97.8 %id)
BF891869 marrow .a 690 to 1136 9 to 455       447/457
(97 %)
14 diff
(97.0 %id)
DB043067 testis .a 758 to 1319 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BU173381 leiomyosarcoma, uterus .a 810 to 1689 1 to 883       883/883
(100 %)
17 diff
(98.1 %id)
CN310336 embryonic stem cells, cell lines H1, H7, andH9 .a 839 to 1421 1 to 583       583/586
(99 %)
3 diff
(99.5 %id)
BM471420 melanotic melanoma, skin .a 984 to 1932 13 to 959       947/1012
(93 %)
22 diff
(97.9 %id)
CN310337 embryonic stem cells, cell lines H1, H7, andH9 .a 1035 to 1316 1 to 282       282/282
(100 %)
0 diff
(100 %id)
CF552299 Pooled muscle (cardiac and skeletal) .a 1209 to 2112 31 to 937       905/937
(96 %)
13 diff
(98.7 %id)
AI656861 pooled germ cell tumors .a 1222 to 1503 282 to 1       282/282
(100 %)
0 diff
(100 %id)
BU176460 eye, retinoblastoma .a 1227 to 2082 1 to 860       860/875
(98 %)
12 diff
(98.7 %id)
BX422034 T cells (Jurkat cell line) .a 1248 to 2056 1 to 809       809/809
(100 %)
0 diff
(100 %id)
BX464679 T cells (Jurkat cell line) .a 1248 to 2237 1 to 984       986/1037
(95 %)
20 diff
(98.1 %id)
BX383332   .a 1248 to 2256 1 to 1006       1006/1006
(100 %)
10 diff
(99.1 %id)
AK025653   .a 1402 to 3982 1 to 2581   tiling clone, available from FLJ, AAA   2581/2581
(100 %)
3 diff
(99.9 %id)
BP239363 Liver .a 1402 to 1971 1 to 570       570/570
(100 %)
10 diff
(98.3 %id)
AL137420 testis .a 1403 to 3984 1 to 2579   available from DKFZ, AAA   2579/2579
(100 %)
8 diff
(99.7 %id)
CD580197 brain .a 1421 to 2187 1 to 776       774/834
(92 %)
19 diff
(97.8 %id)
BG106442 lymph, lymphoma, cell line .a 1458 to 2231 1 to 770       770/772
(99 %)
22 diff
(97.2 %id)
CN310338 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1515 to 1903 1 to 389       389/389
(100 %)
0 diff
(100 %id)
TI_57186138   .a 1521 to 2419 54 to 955       902/902
(100 %)
21 diff
(97.7 %id)
BI855854 breast, mammary adenocarcinoma, cell line .a 1522 to 2419 1 to 901       901/901
(100 %)
21 diff
(97.7 %id)
DA307827 hippocampus .a 1560 to 2141 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
BF819987 kidney_tumor .a 1778 to 2294 534 to 18     Submitted on the opposite strand 517/534
(96 %)
4 diff
(99.3 %id)
TI_1948239461   .a 1878 to 2473 113 to 708       596/628
(94 %)
10 diff
(98.5 %id)
TI_1948239462   .a 1878 to 2200 118 to 440       323/343
(94 %)
6 diff
(98.3 %id)
TI_1948239463   .a 1878 to 2473 718 to 122       597/745
(80 %)
4 diff
(99.5 %id)
EL733621 mixed .a 1885 to 2473 1 to 589       589/656
(89 %)
4 diff
(99.4 %id)
TI_1948239464   .a 1951 to 2473 649 to 126       524/546
(95 %)
4 diff
(99.3 %id)
TI_1948240047   .a 1969 to 2473 1090 to 592     Submitted on the opposite strand 499/1355
(36 %)
32 diff
(97.7 %id)
TI_1948239744   .a 2081 to 2473 979 to 587     Submitted on the opposite strand 393/1376
(28 %)
7 diff
(99.5 %id)
TI_1948240048   .a 2081 to 2473 988 to 594     Submitted on the opposite strand 395/1119
(35 %)
16 diff
(98.6 %id)
TI_1948239173   .a 2093 to 2473 974 to 590     Submitted on the opposite strand 385/1139
(33 %)
15 diff
(98.7 %id)
TI_1948239745   .a 2128 to 2473 939 to 593     Submitted on the opposite strand 347/1124
(30 %)
10 diff
(99.2 %id)
AA378748 synovial membrane .a 2275 to 2482 1 to 209       209/209
(100 %)
1 diff
(99.6 %id)
DA213442 brain .a 2339 to 2893 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
BQ434671 eye, retinoblastoma .a 2409 to 3253 12 to 864       853/866
(98 %)
14 diff
(98.4 %id)
BF811405 colon_ins .a 2501 to 2797 1 to 297       297/297
(100 %)
10 diff
(96.7 %id)
BF871651 lung_tumor .a 2508 to 2976 1 to 470       470/470
(100 %)
11 diff
(97.7 %id)
BF804322 colon_ins .a 2509 to 2897 1 to 393       393/394
(99 %)
6 diff
(98.5 %id)
BF811389 colon_ins .a 2512 to 2677 7 to 172       166/174
(95 %)
5 diff
(97.2 %id)
CN310335 embryonic stem cells, cell lines H1, H7, andH9 .a 2529 to 3125 1 to 597       597/597
(100 %)
1 diff
(99.9 %id)
BG248203 adenocarcinoma cell line, colon .a 2610 to 3374 1 to 756       756/973
(77 %)
26 diff
(97.4 %id)
BQ320096 colon .a 2616 to 2748 20 to 152       133/165
(80 %)
6 diff
(96.4 %id)
BQ330614 lung_tumor .a 2685 to 3011 1 to 327       327/327
(100 %)
0 diff
(100 %id)
DA273815 corpus callosum .a 2703 to 3230 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
BI088087 cervix .a 2715 to 3135 1 to 430       430/545
(78 %)
7 diff
(98.8 %id)
BF811398 colon_ins .a 2732 to 3055 329 to 6     Submitted on the opposite strand 324/329
(98 %)
0 diff
(100 %id)
BE540349 cervix .a 2777 to 3445 1 to 677       677/884
(76 %)
23 diff
(97.4 %id)
AA410504 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2838 to 3227 1 to 386       386/386
(100 %)
8 diff
(98.0 %id)
BQ327811 kidney_tumor .a 2874 to 3352 1 to 480       480/502
(95 %)
17 diff
(96.7 %id)
DB089600 testis .a 2903 to 3370 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
BX464678 T cells (Jurkat cell line) .a 2918 to 3955 1038 to 5       1034/1038
(99 %)
0 diff
(100 %id)
CU450732 epidermis .a 2989 to 3811 825 to 3     Submitted on the opposite strand 823/825
(99 %)
0 diff
(100 %id)
AA322668 brain, cerebellum .a 3076 to 3352 1 to 279       279/279
(100 %)
2 diff
(99.3 %id)
BX414297 T cells (Jurkat cell line) .a 3139 to 3981 851 to 1       851/897
(94 %)
23 diff
(97.5 %id)
BI004327 head_normal .a 3156 to 3431 289 to 16       274/289
(94 %)
0 diff
(100 %id)
BQ961960 epithelioid carcinoma cell line, Pancreas .a 3202 to 3982 827 to 41     Submitted on the opposite strand 787/903
(87 %)
0 diff
(100 %id)
CA431099 cell lines, Chondrosarcoma .a 3257 to 3984 745 to 19   AAA   727/727
(100 %)
2 diff
(99.8 %id)
BG112811 Bone, osteosarcoma, cell line .a 3271 to 3981 15 to 719   AAA   705/719
(98 %)
6 diff
(99.2 %id)
BU634281 cell lines, Chondrosarcoma .a 3273 to 3982 728 to 19   AAA   710/710
(100 %)
2 diff
(99.8 %id)
BX098317 liver and spleen .a 3279 to 3980 1 to 703   AAA   703/703
(100 %)
3 diff
(99.6 %id)
T82022 liver and spleen .a 3280 to 3643 1 to 369   fully sequenced,   369/369
(100 %)
11 diff
(97.1 %id)
CK826509 Pancreas, Purified pancreatic islet .a 3383 to 3983 613 to 13     Submitted on the opposite strand 601/613
(98 %)
0 diff
(100 %id)
CB528733 Aveolar Macrophage, lung .a 3409 to 3984 592 to 17   AAA   576/576
(100 %)
3 diff
(99.5 %id)
BQ013213 placenta .a 3421 to 3982 578 to 17   AAA   562/562
(100 %)
2 diff
(99.7 %id)
AI126237 placenta .a 3465 to 3984 529 to 10       520/529
(98 %)
0 diff
(100 %id)
AW080842 colon, moderately differentiated adenocarcinoma .a 3465 to 3984 538 to 18   AAA   521/521
(100 %)
5 diff
(99.1 %id)
BM145464 leukopheresis .a 3490 to 3920 444 to 14       431/444
(97 %)
0 diff
(100 %id)
CA775357 Pancreas, Purified pancreatic islet .a 3497 to 3954 458 to 1       458/458
(100 %)
4 diff
(99.2 %id)
TI_157605180   .a 3499 to 3982 581 to 98   AAA   484/489
(98 %)
0 diff
(100 %id)
AI738708 colon, colon tumor, RER+ .a 3508 to 3984 491 to 15   AAA   477/477
(100 %)
8 diff
(98.4 %id)
BF437231 Prostate .a 3508 to 3984 484 to 7       478/484
(98 %)
0 diff
(100 %id)
AI288602 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3526 to 3983 459 to 2       458/470
(97 %)
0 diff
(100 %id)
AA033525 heart .a 3532 to 3986 456 to 2     Submitted on the opposite strand 455/464
(98 %)
0 diff
(100 %id)
AI200312 placenta .a 3537 to 3983 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AA748547 germinal center B cell .a 3551 to 3909 359 to 1       359/359
(100 %)
4 diff
(98.9 %id)
AA033526 heart .a 3553 to 3986 1 to 432   AAA Submitted on the opposite strand 432/432
(100 %)
5 diff
(98.9 %id)
DB313123 tongue, tumor tissue .a 3555 to 3982 429 to 1       429/440
(97 %)
11 diff
(97.5 %id)
AW293916   .a 3573 to 3986 431 to 18   AAA   414/414
(100 %)
0 diff
(100 %id)
AA961647 Kidney, kidney tumor .a 3576 to 3980 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AW182578 pooled .a 3591 to 3984 413 to 20   AAA   394/399
(98 %)
2 diff
(99.5 %id)
AA808104 germinal center B cell .a 3593 to 3982 400 to 11   AAA   390/390
(100 %)
1 diff
(99.8 %id)
BE049558 adenocarcinoma, Pancreas .a 3596 to 3984 401 to 13   AAA   389/389
(100 %)
1 diff
(99.8 %id)
AA410505 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3603 to 3986 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
CF529670 placenta .a 3603 to 3982 396 to 17   AAA   380/380
(100 %)
0 diff
(100 %id)
AA884100 pooled .a 3608 to 3983 379 to 5       375/379
(98 %)
0 diff
(100 %id)
T71568 liver and spleen .a 3613 to 3982 375 to 1   fully sequenced,   375/375
(100 %)
11 diff
(97.1 %id)
DB138805 thymus .a 3642 to 4190 2 to 546   tiling clone, capped   545/545
(100 %)
2 diff
(99.7 %id)
AI004853   .a 3677 to 3984 314 to 7       308/314
(98 %)
0 diff
(100 %id)
BQ951443 leiomyosarcoma, uterus .a 3867 to 4690 25 to 845   tiling clone,   821/881
(93 %)
6 diff
(99.4 %id)
T97065 liver and spleen .a 4052 to 4214 1 to 159       159/160
(99 %)
3 diff
(98.2 %id)
AK299312   .b 1 to 2660 4 to 2663 E466G tiling clone,   2663/2663
(100 %)
4 diff
(99.9 %id)
DC372443   .b 1 to 555 4 to 558       558/558
(100 %)
1 diff
(99.9 %id)
DC403437 testis .b 1 to 571 4 to 574   tiling clone,   574/574
(100 %)
0 diff
(100 %id)
DA666742   .c 1 to 548 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
BC019902 Placenta, choriocarcinoma .c 7 to 2389 1 to 2385 exact tiling clone, available from MGC, AAA   2385/2385
(100 %)
5 diff
(99.8 %id)
BG482203 choriocarcinoma, placenta .c 9 to 723 1 to 715       715/717
(99 %)
9 diff
(98.8 %id)
BI089944 cervix .c 9 to 814 1 to 805   available from MGC,   805/806
(99 %)
11 diff
(98.7 %id)
AW732897 choriocarcinoma, placenta .c 11 to 479 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
AW674786 cervix .c 22 to 454 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
AW674004 cervix .c 1974 to 2393 422 to 4   tiling clone,   419/422
(99 %)
0 diff
(100 %id)
BE301368 choriocarcinoma, placenta .c 1990 to 2390 402 to 2       401/402
(99 %)
0 diff
(100 %id)
AI635980 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2044 to 2389 366 to 21       346/366
(94 %)
0 diff
(100 %id)
BG370214 adenocarcinoma, Pancreas .c 2076 to 2391 328 to 13   AAA   316/316
(100 %)
1 diff
(99.7 %id)
AA975024 pooled .c 2079 to 2389 310 to 1       310/310
(100 %)
3 diff
(99.1 %id)
DB313140 tongue, tumor tissue .c 2117 to 2389 273 to 1       273/276
(98 %)
1 diff
(99.7 %id)
BF512390   .c 2133 to 2242 1 to 109   AAA Submitted on the opposite strand 109/112
(97 %)
10 diff
(91.1 %id)
AI674097 pooled .c 2177 to 2389 233 to 21       213/233
(91 %)
0 diff
(100 %id)
BU753425 placenta .c 2215 to 2389 190 to 16   AAA   175/175
(100 %)
0 diff
(100 %id)
AA988905 carcinoid, lung .c 2228 to 2388 161 to 1       161/161
(100 %)
0 diff
(100 %id)
DA329966 hippocampus .d 1 to 563 4 to 566   tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
AL133609 testis .d 415 to 3234 1 to 2820   tiling clone, available from DKFZ, AAA   2820/2820
(100 %)
1 diff
(100.0 %id)
BQ433187 embryonal carcinoma, cell line, testis .d 925 to 1670 1 to 753       753/917
(82 %)
21 diff
(97.8 %id)
BM836551 Ascites, stomach .d 1138 to 1646 1 to 508       508/508
(100 %)
2 diff
(99.7 %id)
CN310334 embryonic stem cells, cell lines H1, H7, andH9 .d 1256 to 1814 13 to 571       559/571
(97 %)
6 diff
(99.0 %id)
DA835510 placenta .d 1270 to 1770 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DA271295 caudate nucleus .d 1365 to 1905 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA227059 brain .d 1366 to 1929 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
BM478569 embryonal carcinoma, cell line, testis .e 1 to 941 1 to 947   tiling clone,   947/1037
(91 %)
23 diff
(97.8 %id)
DA299980 hippocampus .e 642 to 1220 2 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
BM986922 mixed .e 714 to 1172 477 to 19   AAA   459/460
(99 %)
2 diff
(99.6 %id)
DA326683 hippocampus .f 1 to 522 2 to 523 exact tiling clone, capped   522/522
(100 %)
0 diff
(100 %id)
CV365814 nervous_normal .g-u 1 to 245 1 to 244   tiling clone,   244/244
(100 %)
2 diff
(99.2 %id)
DB018156 esophageal, tumor tissue .g-u 198 to 765 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DB073697 testis .g-u 250 to 794 2 to 546   tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
BF768666 epid_tumor .h 1 to 457 6 to 457 C2F G4A Q6S W7G R8E ...     452/477
(94 %)
14 diff
(97.1 %id)
BF768667 epid_tumor .h 4 to 459 14 to 467       454/470
(96 %)
15 diff
(96.9 %id)
BF768541 epid_tumor .h 9 to 459 11 to 461   tiling clone,   451/487
(92 %)
10 diff
(98.0 %id)
BF768668 epid_tumor .h 68 to 459 407 to 20     Submitted on the opposite strand 388/407
(95 %)
0 diff
(100 %id)
BG988972 head_neck .h 106 to 338 237 to 5       233/254
(91 %)
0 diff
(100 %id)
BF768569 epid_tumor .h 263 to 459 211 to 15     Submitted on the opposite strand 197/211
(93 %)
0 diff
(100 %id)
AI969753 pooled germ cell tumors .i 1 to 556 556 to 1 exact tiling clone,   556/556
(100 %)
0 diff
(100 %id)
AW467421 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .i 454 to 905 452 to 1   tiling clone,   452/452
(100 %)
6 diff
(98.7 %id)
AW572834 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .i 504 to 905 402 to 1       402/402
(100 %)
5 diff
(98.8 %id)
BG995210 head_neck .i 830 to 1103 1 to 277   tiling clone,   277/281
(98 %)
19 diff
(93.3 %id)
DA731717   .j 1 to 635 2 to 635 R32X V36X tiling clone, capped   634/639
(99 %)
3 diff
(99.6 %id)
BP229388 brain .k 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
BE278884 choriocarcinoma, placenta .l 1 to 479 1 to 479 N54S S58L A59G V78D A79S ... tiling clone,   479/598
(80 %)
12 diff
(98.0 %id)
AL599259   .n 1 to 436 1 to 436 V29I tiling clone,   436/436
(100 %)
2 diff
(99.6 %id)
BX349103   Gene CCDC21, variant not shown         Suspected internal deletion, this clone was ignored    
BE144025 head_neck Gene CCDC21, variant not shown         Submitted on the opposite strand    
BQ356061 head_neck Gene CCDC21, variant not shown         Suspected internal deletion, this clone was ignored    
AK024038   Gene CCDC21, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C