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Gene CCDC55TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
261 supporting clones for gene CCDC55 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DW440712 Liver .a 1 to 366 384 to 19   tiling clone,   366/384
(95 %)
0 diff
(100 %id)
AI023535   .a 88 to 521 1 to 434   tiling clone, Submitted on the opposite strand 434/434
(100 %)
9 diff
(98.0 %id)
DW454378 Liver .a 204 to 366 181 to 19       163/181
(90 %)
0 diff
(100 %id)
DR762630 embryonic stem .a 458 to 1313 1 to 856       856/856
(100 %)
4 diff
(99.6 %id)
DW432862 Liver .a 462 to 713 13 to 264       252/264
(95 %)
8 diff
(97.0 %id)
BE889889 leiomyosarcoma, uterus .a 464 to 1116 1 to 650   available from MGC,   650/1066
(60 %)
11 diff
(99.0 %id)
BC062425 Brain, glioblastoma .a 465 to 1639 1 to 1177   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1177/1205
(97 %)
6 diff
(99.6 %id)
AL136806 testis .a 466 to 2969 1 to 2504   tiling clone, available from DKFZ,   2504/2547
(98 %)
1 diff
(100.0 %id)
FN124205 breast carcinoma .a 466 to 554 93 to 4     Submitted on the opposite strand 90/106
(84 %)
0 diff
(100 %id)
BU928760 brain, glioblastoma .a 466 to 998 1 to 539   available from MGC,   539/641
(84 %)
9 diff
(98.6 %id)
NM_032141.2   .a 466 to 2963 1 to 2498   RefSeq, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 2498/2498
(100 %)
0 diff
(100 %id)
BP245700 Kidney .a 469 to 1049 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BP247207 Kidney .a 469 to 1056 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
BP249351 Kidney .a 469 to 1050 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP351622   .a 469 to 1056 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
AK313963 testis .a 470 to 2170 1 to 1701       1701/1701
(100 %)
2 diff
(99.9 %id)
BC105044 Brain, cerebellum, PCR rescued clones .a 470 to 2236 1 to 1767       1767/1767
(100 %)
0 diff
(100 %id)
BC105046 Brain, cerebellum, PCR rescued clones .a 470 to 2240 1 to 1771       1771/1771
(100 %)
0 diff
(100 %id)
TI_1241108591   .a 470 to 1460 48 to 1036       989/1205
(82 %)
10 diff
(99.2 %id)
TI_1241108595   .a 470 to 1554 46 to 1118       1073/1196
(89 %)
26 diff
(97.9 %id)
BP349065 brain .a 470 to 1051 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BC046116 Uterus, leiomyosarcoma .a 471 to 1673 17 to 1218   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1202/1211
(99 %)
4 diff
(99.7 %id)
TI_57197943   .a 471 to 1275 64 to 873       810/878
(92 %)
20 diff
(97.8 %id)
DB049758 testis .a 471 to 1037 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB181812 liver, tumor tissue .a 471 to 1045 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BQ711739 Spleen .a 473 to 1347 1 to 885       885/889
(99 %)
13 diff
(98.6 %id)
FN129897 breast carcinoma .a 474 to 551 1 to 79       79/79
(100 %)
5 diff
(93.7 %id)
BC040118 Brain, Lung, Testis, adult, pooled whole .a 477 to 2963 1 to 2487   available from MGC, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 2487/2487
(100 %)
3 diff
(99.9 %id)
BG431085 Kidney .a 477 to 1178 1 to 709       709/882
(80 %)
29 diff
(96.8 %id)
BI821266 pooled brain, lung, testis .a 477 to 1275 1 to 804       804/809
(99 %)
13 diff
(98.4 %id)
DN995985 breast cancer, Mammary gland (cancer tissue) .a 477 to 1124 8 to 654       647/654
(98 %)
9 diff
(98.7 %id)
AF161358 cord Blood .a 478 to 742 1 to 265       265/265
(100 %)
1 diff
(99.7 %id)
BG943521 blood .a 478 to 1074 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
AF150270 umbilical cord blood .a 478 to 742 1 to 265       265/265
(100 %)
1 diff
(99.7 %id)
BF978303 melanotic melanoma, high MDR, skin .a 478 to 1107 1 to 622       622/782
(79 %)
12 diff
(98.5 %id)
CD698645 normal nasopharynx .a 479 to 901 32 to 453       422/453
(93 %)
13 diff
(97.2 %id)
DA473474   .a 479 to 1021 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
AL602890 human skeletal muscle .a 479 to 1101 1 to 625       625/625
(100 %)
4 diff
(99.4 %id)
BP236622 coronary artery .a 479 to 1066 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BP342095 stomach mucosa .a 479 to 1063 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA197634 brain .a 480 to 1038 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA382069 thalamus .a 480 to 1028 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA450315 tongue, tumor tissue .a 480 to 1041 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA907073   .a 480 to 1045 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
AL708270 human skeletal muscle .a 483 to 1213 1 to 734       734/734
(100 %)
12 diff
(98.4 %id)
BP310548 brain .a 483 to 1065 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BE567318 bladder, carcinoma, cell line .a 489 to 1116 1 to 635       635/810
(78 %)
26 diff
(96.8 %id)
CA975857 sciatic nerve .a 491 to 1405 1 to 916       916/917
(99 %)
10 diff
(99.0 %id)
CX871920 embryonic stem .a 491 to 1214 1 to 724       724/724
(100 %)
3 diff
(99.6 %id)
CR533555   .a 494 to 2229 1 to 1737       1737/1738
(99 %)
8 diff
(99.6 %id)
CA389254 eye, RPE/choroid .a 497 to 971 1 to 475       475/475
(100 %)
0 diff
(100 %id)
BE568569 bladder, carcinoma, cell line .a 502 to 1110 1 to 621       618/692
(89 %)
29 diff
(95.9 %id)
AW293820   .a 514 to 844 336 to 6       331/338
(97 %)
2 diff
(99.5 %id)
BI430554 endometrium .a 533 to 848 11 to 326   AAA Submitted on the opposite strand 316/326
(96 %)
1 diff
(99.7 %id)
BF357673 head_neck .a 615 to 968 1 to 353       353/359
(98 %)
6 diff
(98.4 %id)
BF357686 head_neck .a 624 to 968 1 to 347       347/353
(98 %)
19 diff
(94.7 %id)
DA935236 Spleen .a 645 to 1243 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
EH317784   .a 655 to 724 1 to 70       70/70
(100 %)
0 diff
(100 %id)
DB267884 uterus .a 663 to 1234 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA439039 tongue, tumor tissue .a 683 to 1261 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
AI918657 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 683 to 968 285 to 1       285/286
(99 %)
1 diff
(99.7 %id)
CR980110 T-Lymphocytes .a 689 to 1528 18 to 858       841/858
(98 %)
7 diff
(99.2 %id)
BF839559 head_neck .a 693 to 847 1 to 155       155/155
(100 %)
2 diff
(98.8 %id)
BF839547 head_neck .a 695 to 847 18 to 169       152/169
(89 %)
6 diff
(96.5 %id)
BP350898   .a 729 to 1309 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
TI_1241109071   .a 831 to 1951 1 to 1115       1115/1255
(88 %)
19 diff
(98.5 %id)
DA572795 whole embryo, mainly body .a 848 to 1638 2 to 792   capped   791/795
(99 %)
12 diff
(98.5 %id)
DB163734 thymus .a 870 to 1450 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
CX164984 human embryonic stem cells differentiated toan early endodermal cell type .a 881 to 1589 1 to 709       709/709
(100 %)
1 diff
(99.9 %id)
AW889802 nervous_tumor .a 1003 to 1384 36 to 417       382/428
(89 %)
12 diff
(97.2 %id)
BG257703 embryonal carcinoma, cell line, testis .a 1013 to 1713 1 to 698       698/698
(100 %)
6 diff
(99.2 %id)
EC477484 Prostate .a 1017 to 1113 1 to 97       97/97
(100 %)
0 diff
(100 %id)
DB359887 whole embryo, mainly body .a 2398 to 2970 567 to 1   tiling clone,   567/568
(99 %)
18 diff
(96.9 %id)
BC016313 Bone marrow, acute myelogenous leukemia .b 1 to 1240 4 to 1243   tiling clone, available from MGC, AAA   1240/1240
(100 %)
1 diff
(100.0 %id)
BF240617 bone marrow, from acute myelogenous leukemia .b 1 to 653 1 to 643   available from MGC,   643/851
(75 %)
21 diff
(97.6 %id)
CB962455 Blood vessels - aorta, basilar and artery .b 1 to 583 1 to 583       583/599
(97 %)
2 diff
(99.7 %id)
BG750209 eye, normal pigmented retinal epithelium .b 44 to 610 1 to 566       566/567
(99 %)
14 diff
(97.6 %id)
BE886558 leiomyosarcoma, uterus .b 69 to 762 2 to 698       697/698
(99 %)
5 diff
(99.3 %id)
BJ989842 hepatoblastoma .b 73 to 672 1 to 600       600/600
(100 %)
5 diff
(99.2 %id)
CR986513 T-Lymphocytes .b 76 to 903 1 to 828       828/828
(100 %)
1 diff
(99.9 %id)
CK003285 brain/CNS, Human Brain - Cerebellar Cortex .b 140 to 825 1 to 681       681/681
(100 %)
8 diff
(98.9 %id)
BJ989843 hepatoblastoma .b 1959 to 2498 540 to 1   tiling clone,   540/540
(100 %)
1 diff
(99.9 %id)
DC397008 testis .c 1 to 555 1 to 555   tiling clone,   555/555
(100 %)
1 diff
(99.9 %id)
BU568564 testis .c 262 to 559 1 to 298       298/333
(89 %)
4 diff
(98.8 %id)
CB957946 Pooled-Glandular .c 262 to 881 1 to 626   AAA   626/825
(75 %)
15 diff
(98.2 %id)
DC327004 caudate nucleus .c 265 to 824 1 to 560       560/560
(100 %)
3 diff
(99.5 %id)
BP356700 mammary gland .c 266 to 847 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AK297102   .c 271 to 2057 1 to 1788 E33G E34G N35K N36* tiling clone,   1788/1788
(100 %)
3 diff
(99.9 %id)
DC315516 amygdala .c 271 to 854 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DC348668   .c 271 to 830 1 to 561       561/564
(99 %)
5 diff
(99.2 %id)
BP217740 caudate nucleus .c 277 to 858 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP246896 Kidney .c 277 to 854 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BC143539 Brain, cerebellum, PCR rescued clones .c 278 to 1954 1 to 1677 exact tiling clone,   1677/1677
(100 %)
0 diff
(100 %id)
CN262159 embryonic stem cells, DMSO-treated H9 cellline .c 285 to 684 1 to 400       400/402
(99 %)
1 diff
(99.8 %id)
BQ951915 sciatic nerve .d 1 to 816 36 to 862   tiling clone,   827/929
(89 %)
28 diff
(97.0 %id)
TI_2194576314   .d 14 to 1077 93 to 1156   tiling clone,   1064/1268
(83 %)
9 diff
(99.3 %id)
TI_2194577256   .d 14 to 1041 90 to 1111       1022/1243
(82 %)
14 diff
(98.9 %id)
TI_2194577261   .d 14 to 978 90 to 1050       961/1176
(81 %)
7 diff
(99.5 %id)
TI_2194575720   .e 1 to 1019 43 to 1060   tiling clone,   1019/1223
(83 %)
18 diff
(98.6 %id)
TI_2194575724   .e 1 to 1012 41 to 1045   tiling clone,   1006/1164
(86 %)
23 diff
(98.1 %id)
TI_2194576301   .e 1 to 1143 50 to 1174 E63G Q64T E65G R67K M68N ... tiling clone,   1126/1249
(90 %)
33 diff
(97.4 %id)
CB957325 Pooled-Glandular .f 1 to 383 1 to 383   tiling clone,   383/391
(97 %)
3 diff
(99.3 %id)
BG500892 adenocarcinoma, Prostate .f 17 to 765 1 to 757 K31N E33G E34G N35K N36* tiling clone,   755/759
(99 %)
14 diff
(98.2 %id)
CX870677 embryonic stem .g 1 to 774 1 to 774 exact tiling clone,   774/774
(100 %)
1 diff
(99.9 %id)
BU160071 testis .h-u 1 to 565 1 to 567   tiling clone,   567/828
(68 %)
22 diff
(97.4 %id)
AA431044   .h-u 31 to 442 25 to 436       412/440
(93 %)
14 diff
(96.9 %id)
TI_2194577271   .h-u 35 to 1120 1154 to 70 exact tiling clone,   1085/1278
(84 %)
0 diff
(100 %id)
BF592400 breast, lobullar carcinoma in situ .h-u 41 to 451 17 to 427     Submitted on the opposite strand 411/427
(96 %)
6 diff
(98.6 %id)
DA134445 alzheimer cortex .h-u 50 to 591 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
AW819792 stomach .h-u 56 to 680 1 to 624 T10I S42G I143K     624/624
(100 %)
7 diff
(98.9 %id)
BF687733 brain, glioblastoma .h-u 71 to 668 1 to 595 K51E G79E R80E G81A M82*     595/800
(74 %)
17 diff
(97.9 %id)
TI_1241111729   .h-u 86 to 1037 13 to 965 exact     953/967
(98 %)
14 diff
(98.6 %id)
CU447909 epidermis .h-u 103 to 566 14 to 478       465/512
(90 %)
7 diff
(98.7 %id)
AW880547 ovary .h-u 111 to 457 357 to 11       347/357
(97 %)
0 diff
(100 %id)
TI_2194576948   .h-u 181 to 1120 1 to 938 exact     938/1224
(76 %)
6 diff
(99.6 %id)
FN079548 breast carcinoma .h-u 235 to 337 96 to 1     Submitted on the opposite strand 96/96
(100 %)
7 diff
(92.8 %id)
BG027889 Bone, osteosarcoma, cell line .h-u 256 to 822 11 to 568       558/933
(59 %)
11 diff
(98.9 %id)
BQ353914 head_neck .h-u 269 to 863 23 to 616       594/616
(96 %)
9 diff
(98.6 %id)
AW839167 leiomios .h-u 278 to 594 24 to 340       317/340
(93 %)
6 diff
(98.3 %id)
AW867080 stomach_normal .h-u 292 to 517 228 to 2       227/235
(96 %)
0 diff
(100 %id)
AW839118 leiomios .h-u 305 to 625 1 to 321       321/323
(99 %)
2 diff
(99.4 %id)
EC510121 Prostate .h-u 328 to 422 1 to 91       91/91
(100 %)
9 diff
(90.2 %id)
EC519784 Prostate .h-u 328 to 422 1 to 93       93/93
(100 %)
7 diff
(92.5 %id)
CU445152 epidermis .h-u 337 to 1052 731 to 16     Submitted on the opposite strand 716/733
(97 %)
0 diff
(100 %id)
AW511905 Kidney, renal cell tumor .h-u 376 to 715 340 to 1       340/340
(100 %)
0 diff
(100 %id)
BG011973 placenta_normal .h-u 433 to 959 13 to 539       527/540
(97 %)
7 diff
(98.8 %id)
CF455182 peripheral nervous system .h-u 441 to 1221 1 to 779       779/779
(100 %)
4 diff
(99.5 %id)
CB162055 Liver .h-u 454 to 1034 1 to 581       581/581
(100 %)
0 diff
(100 %id)
CB163351 Liver .h-u 454 to 1063 1 to 610       610/610
(100 %)
0 diff
(100 %id)
BE009219 breast_normal .h-u 466 to 624 11 to 168       158/173
(91 %)
2 diff
(98.9 %id)
BU161901 eye, retinoblastoma .h-u 537 to 1379 1 to 849       849/899
(94 %)
12 diff
(98.7 %id)
AA991639 germ cell tumor .h-u 558 to 809 252 to 1       252/252
(100 %)
0 diff
(100 %id)
TI_154007452   .h-u 571 to 1367 876 to 85   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 792/953
(83 %)
9 diff
(99.1 %id)
T10388   .h-u 579 to 740 1 to 164       164/165
(99 %)
2 diff
(98.8 %id)
AW352143 head_neck .h-u 588 to 876 1 to 289       289/289
(100 %)
6 diff
(98.0 %id)
AW352138 head_neck .h-u 592 to 876 1 to 286       286/286
(100 %)
6 diff
(98.0 %id)
AW352140 head_neck .h-u 592 to 876 1 to 286       286/286
(100 %)
3 diff
(99.0 %id)
AW352164 head_neck .h-u 592 to 876 1 to 289       289/289
(100 %)
15 diff
(94.9 %id)
BG676288 skin, squamous cell carcinoma .h-u 607 to 1378 1 to 777       777/947
(82 %)
30 diff
(96.9 %id)
BE817422 breast_normal .h-u 636 to 941 314 to 15       300/323
(92 %)
0 diff
(100 %id)
CA434998 lung, Metastatic Chondrosarcoma .h-u 656 to 1367 722 to 19   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 704/705
(99 %)
11 diff
(98.5 %id)
W25672 lung .h-u 660 to 968 1 to 309       309/309
(100 %)
0 diff
(100 %id)
TI_1241109069   .h-u 672 to 1126 1 to 455       455/1254
(36 %)
8 diff
(99.4 %id)
TI_1241109065   .h-u 682 to 1127 9 to 454       446/1268
(35 %)
9 diff
(99.3 %id)
TI_2194576945   .h-u 684 to 1120 11 to 447       437/1256
(34 %)
3 diff
(99.8 %id)
AI564576 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .h-u 691 to 1142 453 to 2       452/453
(99 %)
0 diff
(100 %id)
AF130742 tongue .h-u 715 to 881 9 to 175       167/179
(93 %)
8 diff
(95.6 %id)
CA454804   .h-u 732 to 1598 1 to 873       873/873
(100 %)
11 diff
(98.8 %id)
W03015 melanocyte .h-u 742 to 1275 1 to 554       554/563
(98 %)
26 diff
(95.4 %id)
AA242889 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 742 to 1123 1 to 382       382/382
(100 %)
0 diff
(100 %id)
AA418425 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 742 to 1327 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
FN062041 breast carcinoma .h-u 754 to 848 22 to 118       97/118
(82 %)
6 diff
(95.0 %id)
AV712332   .h-u 774 to 1483 1 to 710       710/710
(100 %)
2 diff
(99.8 %id)
AA384085 thyroid gland .h-u 808 to 1099 13 to 305       293/305
(96 %)
6 diff
(98.1 %id)
AW856034 colon .h-u 812 to 1000 25 to 212       188/221
(85 %)
6 diff
(97.3 %id)
N87364   .h-u 828 to 1135 1 to 299       299/299
(100 %)
10 diff
(96.7 %id)
AW362599 colon .h-u 849 to 1000 1 to 153       153/167
(91 %)
9 diff
(94.7 %id)
CR739290 pooled .h-u 855 to 1539 1 to 685       685/685
(100 %)
4 diff
(99.5 %id)
AW603595 colon_normal .h-u 901 to 1038 13 to 147       135/147
(91 %)
6 diff
(96.0 %id)
AW603592 colon_normal .h-u 906 to 1038 1 to 132       132/132
(100 %)
1 diff
(99.3 %id)
N77368 liver and spleen .h-u 941 to 1226 1 to 283       283/287
(98 %)
4 diff
(98.7 %id)
BG952748 colon .h-u 950 to 1131 21 to 197       177/197
(89 %)
0 diff
(100 %id)
AI400058 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 954 to 1370 417 to 1       417/417
(100 %)
0 diff
(100 %id)
R16931 liver and spleen .h-u 961 to 1279 1 to 323       323/328
(98 %)
5 diff
(98.5 %id)
AA455417 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 975 to 1420 1 to 447       447/447
(100 %)
5 diff
(98.9 %id)
TI_154093634   .h-u 987 to 1843 959 to 104   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 856/931
(91 %)
26 diff
(97.3 %id)
TI_149312742   .h-u 994 to 1849 934 to 89   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 846/986
(85 %)
18 diff
(98.2 %id)
BF966087 Bone, osteosarcoma, cell line .h-u 1005 to 1794 13 to 805       793/836
(94 %)
21 diff
(97.5 %id)
TI_159722565   .h-u 1038 to 1840 870 to 79   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 792/955
(82 %)
16 diff
(98.4 %id)
CB160424 Liver .h-u 1051 to 1613 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
T84421 liver and spleen .h-u 1058 to 1415 1 to 362       362/484
(74 %)
11 diff
(97.8 %id)
T82821 liver and spleen .h-u 1077 to 1436 1 to 369       369/432
(85 %)
10 diff
(97.7 %id)
BX113866 liver and spleen .h-u 1079 to 1843 1 to 765   tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 765/765
(100 %)
0 diff
(100 %id)
TI_159697667   .h-u 1079 to 1844 834 to 77       758/1072
(70 %)
0 diff
(100 %id)
BF095364 uterus_tumor .h-u 1090 to 1457 381 to 14       368/395
(93 %)
0 diff
(100 %id)
CA944528 Human Lung Epithelial cells, lung .h-u 1108 to 1840 748 to 19   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 730/730
(100 %)
4 diff
(99.5 %id)
T98370 liver and spleen .h-u 1111 to 1515 1 to 418   fully sequenced,   418/418
(100 %)
28 diff
(93.4 %id)
BU567909 testis .h-u 1142 to 1829 19 to 717       699/861
(81 %)
21 diff
(97.6 %id)
BQ314825 denis_drash .h-u 1143 to 1584 1 to 443       443/443
(100 %)
11 diff
(97.6 %id)
BQ447140 Knee, Osteoarthritic Cartilage .h-u 1148 to 1849 719 to 19   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 701/701
(100 %)
9 diff
(98.8 %id)
CA423713 cell lines, Chondrosarcoma .h-u 1148 to 1844 714 to 18       697/714
(97 %)
0 diff
(100 %id)
BF927720 nervous_tumor .h-u 1151 to 1288 1 to 138       138/138
(100 %)
0 diff
(100 %id)
BU620121 Cell Line, Chondrosarcoma .h-u 1151 to 1843 707 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 691/692
(99 %)
6 diff
(99.2 %id)
CA423917 cell lines, Chondrosarcoma .h-u 1164 to 1843 695 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 679/680
(99 %)
3 diff
(99.6 %id)
CA425720 cell lines, Chondrosarcoma .h-u 1170 to 1843 685 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 669/674
(99 %)
8 diff
(98.9 %id)
BM978292 lung .h-u 1173 to 1849 695 to 19   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 677/677
(100 %)
0 diff
(100 %id)
TI_57163562   .h-u 1190 to 1842 28 to 672   AAA   645/801
(80 %)
12 diff
(98.6 %id)
AW977962   .h-u 1191 to 1849 659 to 1     Submitted on the opposite strand 659/659
(100 %)
13 diff
(98.1 %id)
BM991673 Bone, Subchondral Bone .h-u 1192 to 1844 670 to 18       653/670
(97 %)
0 diff
(100 %id)
BF952214 nervous_normal .h-u 1204 to 1310 119 to 9       111/126
(88 %)
0 diff
(100 %id)
BI836304 pooled pancreas and spleen .h-u 1204 to 1842 12 to 644   AAA   633/773
(81 %)
9 diff
(98.9 %id)
CK904324 Islets of Langerhans, Pancreas .h-u 1210 to 1811 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
BM021500 Islets of Langerhans, Pancreas .h-u 1226 to 1788 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
BF439613 pooled .h-u 1264 to 1851 593 to 5       589/593
(99 %)
0 diff
(100 %id)
BQ003125 Chondrosarcoma, Left Pelvis .h-u 1274 to 1849 593 to 19   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 575/575
(100 %)
1 diff
(99.9 %id)
BI041980 nervous_tumor .h-u 1292 to 1638 1 to 348       348/361
(96 %)
12 diff
(96.7 %id)
BM986793 mixed .h-u 1331 to 1843 529 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 513/513
(100 %)
0 diff
(100 %id)
AW051646 Kidney .h-u 1334 to 1845 512 to 1       512/512
(100 %)
1 diff
(99.9 %id)
BE856803 pooled .h-u 1343 to 1843 512 to 12   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 501/501
(100 %)
1 diff
(99.9 %id)
H49544 liver and spleen .h-u 1346 to 1844 510 to 6       505/513
(98 %)
0 diff
(100 %id)
BF111290 pooled .h-u 1346 to 1874 531 to 2   tiling clone,   530/531
(99 %)
0 diff
(100 %id)
AW340325 pooled .h-u 1366 to 1843 490 to 13   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 478/478
(100 %)
4 diff
(99.2 %id)
AI376978   .h-u 1367 to 1844 482 to 5       478/482
(99 %)
0 diff
(100 %id)
AI457602 pooled .h-u 1367 to 1851 490 to 6       485/490
(98 %)
0 diff
(100 %id)
N72273 melanocyte .h-u 1377 to 1843 470 to 1       470/471
(99 %)
6 diff
(98.8 %id)
AA811439 germinal center B cell .h-u 1384 to 1850 478 to 13   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 466/466
(100 %)
2 diff
(99.6 %id)
CD678657 eye, Trabecular meshwork .h-u 1388 to 1843 1 to 456   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 456/456
(100 %)
1 diff
(99.8 %id)
BQ005161 Chondrosarcoma, Left Pelvis .h-u 1395 to 1845 467 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 451/451
(100 %)
0 diff
(100 %id)
AI276047 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 1397 to 1846 451 to 2       450/451
(99 %)
0 diff
(100 %id)
AI690166 carcinoid, lung .h-u 1408 to 1850 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AI208502   .h-u 1409 to 1846 440 to 3       438/440
(99 %)
0 diff
(100 %id)
BF438107 carcinoid, lung .h-u 1409 to 1851 445 to 3       443/445
(99 %)
0 diff
(100 %id)
DB529765 hippocampus .h-u 1410 to 1843 1 to 430     Submitted on the opposite strand 430/430
(100 %)
17 diff
(96.1 %id)
AA252033 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 1414 to 1844 438 to 8       431/438
(98 %)
0 diff
(100 %id)
AW512929 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .h-u 1416 to 1781 366 to 1       366/366
(100 %)
3 diff
(99.2 %id)
F34581 pectoral muscle (after mastectomy) .h-u 1420 to 1836 1 to 417       417/417
(100 %)
9 diff
(97.9 %id)
AA610861 lung, lung tumor .h-u 1423 to 1842 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
AI041703 parathyroid gland, parathyroid tumor .h-u 1438 to 1843 420 to 15   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 406/406
(100 %)
1 diff
(99.8 %id)
TI_153988325   .h-u 1460 to 1843 478 to 95   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 384/384
(100 %)
1 diff
(99.8 %id)
R16879 liver and spleen .h-u 1479 to 1844 380 to 3       378/381
(99 %)
0 diff
(100 %id)
AW204616   .h-u 1480 to 1843 379 to 16   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 364/364
(100 %)
1 diff
(99.8 %id)
T98371 liver and spleen .h-u 1485 to 1833 361 to 1   fully sequenced,   361/361
(100 %)
20 diff
(94.5 %id)
AI433344 Kidney .h-u 1497 to 1844 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
AI208503   .h-u 1499 to 1846 349 to 3       347/349
(99 %)
0 diff
(100 %id)
DB301122 alzheimer cortex .h-u 1557 to 1850 294 to 1       294/294
(100 %)
2 diff
(99.4 %id)
AW271536 Kidney .h-u 1558 to 1845 300 to 13   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 288/288
(100 %)
0 diff
(100 %id)
T90000 liver and spleen .h-u 1577 to 1844 274 to 2       273/277
(98 %)
0 diff
(100 %id)
N55362 liver and spleen .h-u 1584 to 1851 267 to 1       267/267
(100 %)
1 diff
(99.7 %id)
BF056475 pooled germ cell tumors .h-u 1591 to 1843 263 to 11   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 253/371
(68 %)
3 diff
(99.2 %id)
AI093954 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 1632 to 1844 220 to 8       213/220
(96 %)
0 diff
(100 %id)
DC403173 testis .i 1 to 547 1 to 547 S8X V80X tiling clone,   547/547
(100 %)
0 diff
(100 %id)
DC392387 stomach .j 1 to 562 1 to 562 exact tiling clone,   562/562
(100 %)
0 diff
(100 %id)
BQ428694 testis .j 8 to 403 1 to 394       394/409
(96 %)
9 diff
(97.8 %id)
AV757699 bone marrow .k 1 to 482 11 to 475 D2V I4D G5R V6R S7H ... tiling clone,   465/476
(97 %)
21 diff
(95.6 %id)
AV755876 bone marrow .k 1 to 474 11 to 478 D2V I4D G5R V6R S7H ... tiling clone,   468/478
(97 %)
21 diff
(95.7 %id)
BX507093 Liver .k 48 to 431 1 to 382   tiling clone,   382/382
(100 %)
3 diff
(99.3 %id)
BI193100 epithelioid carcinoma cell line, Pancreas .l 1 to 685 1 to 685 C84R tiling clone,   685/685
(100 %)
11 diff
(98.4 %id)
AA953182 Kidney, kidney tumor .m 1 to 372 373 to 1   tiling clone,   373/373
(100 %)
1 diff
(99.8 %id)
BE465681 malignant melanoma, metastatic to lymphnode, skin .m 348 to 844 497 to 1 exact tiling clone,   497/497
(100 %)
0 diff
(100 %id)
AW001018 Kidney .n 1 to 582 583 to 1 exact tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
BM722911 eye, fetal eye .o-u 1 to 573 1 to 574 exact tiling clone,   574/574
(100 %)
1 diff
(99.9 %id)
BM677380 eye, fetal eye .o-u 634 to 1321 688 to 1   tiling clone,   688/688
(100 %)
4 diff
(99.5 %id)
AU185483 skin .o-u 1110 to 1299 190 to 1       190/190
(100 %)
0 diff
(100 %id)
BF699329 brain, primitive neuroectoderm .p 1 to 635 1 to 636 F45L G46E I47* tiling clone,   636/1030
(61 %)
21 diff
(98.0 %id)
TI_149294133   .p 638 to 1315 765 to 91   tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 675/675
(100 %)
3 diff
(99.6 %id)
BU682951 lung .p 689 to 1315 643 to 17   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 627/627
(100 %)
0 diff
(100 %id)
BP248281 Kidney .q 1 to 583 1 to 583 K32T tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
CD638900 pooled .r 1 to 541 1 to 540 exact tiling clone,   540/540
(100 %)
3 diff
(99.5 %id)
AI935032 pooled .s 1 to 433 558 to 125 L6F R7K P8T N9K W10L ... tiling clone,   530/558
(94 %)
2 diff
(99.7 %id)
BU947504 insulinoma, Pancreas .t 1 to 388 404 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 388/615
(63 %)
2 diff
(99.7 %id)
AV750652 Pituitary .u-u 1 to 349 1 to 340 L3I tiling clone,   340/340
(100 %)
8 diff
(97.7 %id)
FN112948 breast carcinoma .va-u 1 to 84 1 to 84 exact tiling clone,   84/84
(100 %)
3 diff
(96.5 %id)
BF350220 head_neck Gene CCDC55, variant not shown         This clone was ignored    
DC329355 corpus callosum Gene CCDC55, variant not shown         This clone was ignored    
EC452227 Prostate Gene CCDC55, variant not shown              
DC378965 pericardium Gene CCDC55, variant not shown         Suspected internal deletion, this clone was ignored    
M85935   Gene CCDC55, variant not shown              
AK094552 amygdala Gene CCDC55, variant not shown       available from FLJ, This clone was ignored    
CR741322 liver and spleen Gene CCDC55, variant not shown              
AW177782 head_neck Gene CCDC55, variant not shown              
TI_2194576947   Gene CCDC55, variant not shown         Suspected internal deletion, this clone was ignored    
TI_2194576695   Gene CCDC55, variant not shown              
TI_2194577266   Gene CCDC55, variant not shown              
DA382200 thalamus Gene CCDC55, variant not shown       capped      
DC345792 tongue, tumor tissue Gene CCDC55, variant not shown         This clone was ignored    
T85739 liver and spleen Gene CCDC55, variant not shown       fully sequenced, This clone was ignored    
T90833 liver and spleen Gene CCDC55, variant not shown       fully sequenced, This clone was ignored    
H48295 liver and spleen Gene CCDC55, variant not shown              
R99990 liver and spleen Gene CCDC55, variant not shown              
AA741182 germinal center B cell Gene CCDC55, variant not shown         Suspected internal deletion, this clone was ignored    
AW295055   Gene CCDC55, variant not shown         Submitted on the opposite strand    
BC143417 Brain, cerebellum, PCR rescued clones Gene CCDC55, variant not shown         This clone was ignored    
DA955777 Spleen Gene CCDC55, variant not shown       capped      
DB333997 Spleen Gene CCDC55, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m, .n, .o-u, .p, .q, .r, .s, .t, .u-u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C