| cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
| BX449007 | fetal liver, Liver | .a | -8 to 958 | 21 to 978 | tiling clone, | 958/978 (97 %) | 20 diff (98.0 %id) | ||
| BX449006 | fetal liver, Liver | .a | 2719 to 3703 | 983 to 1 | tiling clone, | 983/988 (99 %) | 8 diff (99.2 %id) | ||
| NM_138615.2 | .b | 1 to 4086 | 1 to 4086 | exact | RefSeq, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 4086/4086 (100 %) | 0 diff (100 %id) | |
| DB454748 | testis | .b | 20 to 495 | 1 to 476 | tiling clone, | 476/476 (100 %) | 0 diff (100 %id) | ||
| BC028405 | Brain, hippocampus | .b | 227 to 4083 | 8 to 3863 | T159A P175Q L265V Q518K S600C ... | available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 3856/3856 (100 %) | 8 diff (99.8 %id) |
| DA277537 | corpus callosum | .b | 231 to 795 | 2 to 566 | capped | 565/565 (100 %) | 0 diff (100 %id) | ||
| DB268156 | uterus | .b | 231 to 728 | 2 to 499 | capped | 498/498 (100 %) | 0 diff (100 %id) | ||
| AL555884 | placenta | .b | 240 to 1174 | 1 to 933 | 933/933 (100 %) | 8 diff (99.2 %id) | |||
| BI910096 | leukocyte | .b | 246 to 955 | 1 to 713 | 713/713 (100 %) | 15 diff (97.9 %id) | |||
| BC020126 | Lymph, lymphoma | .b | 253 to 4083 | 1 to 3831 | exact | tiling clone, available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 3831/3831 (100 %) | 0 diff (100 %id) |
| CN390142 | embryonic stem cells, cell lines H1, H7, andH9 | .b | 254 to 946 | 1 to 695 | 695/695 (100 %) | 5 diff (99.3 %id) | |||
| BF794552 | lymph, lymphoma, cell line | .b | 254 to 1072 | 1 to 819 | 819/1132 (72 %) | 35 diff (97.0 %id) | |||
| CN390143 | embryonic stem cells, DMSO-treated H9 cellline | .b | 255 to 443 | 1 to 189 | 189/189 (100 %) | 0 diff (100 %id) | |||
| CD358712 | testis | .b | 255 to 977 | 1 to 731 | 731/915 (79 %) | 23 diff (97.5 %id) | |||
| BU594473 | mixed (pool of 40 RNAs) | .b | 271 to 1012 | 1 to 744 | 744/848 (87 %) | 20 diff (97.7 %id) | |||
| AB020697 | brain | .b | 284 to 4083 | 1 to 3800 | exact | available from KIAA, | 3800/3800 (100 %) | 0 diff (100 %id) | |
| BM904372 | lymph, lymphoma, cell line | .b | 291 to 1182 | 1 to 911 | 910/1006 (90 %) | 25 diff (97.6 %id) | |||
| BU193557 | leiomyosarcoma, uterus | .b | 294 to 1029 | 1 to 738 | 738/943 (78 %) | 15 diff (98.5 %id) | |||
| BM476976 | leiomyosarcoma, uterus | .b | 299 to 1206 | 1 to 918 | 918/1115 (82 %) | 35 diff (96.9 %id) | |||
| AI815600 | brain, frontal lobe | .b | 361 to 710 | 1 to 350 | 350/350 (100 %) | 0 diff (100 %id) | |||
| AI928932 | brain, frontal lobe | .b | 361 to 779 | 1 to 418 | 418/418 (100 %) | 1 diff (99.8 %id) | |||
| DA467707 | cord Blood | .b | 534 to 1107 | 2 to 575 | capped | 574/574 (100 %) | 0 diff (100 %id) | ||
| BX282025 | lymph, lymphoma, cell line | .b | 578 to 1062 | 1 to 485 | 485/485 (100 %) | 0 diff (100 %id) | |||
| BM478224 | lymph, lymphoma, cell line | .b | 578 to 1518 | 1 to 945 | 945/1037 (91 %) | 18 diff (98.3 %id) | |||
| BM477540 | lymph, lymphoma, cell line | .b | 627 to 1408 | 1 to 788 | 788/1068 (73 %) | 27 diff (97.5 %id) | |||
| BF981852 | duodenal adenocarcinoma, cell line, small intestine | .b | 663 to 1415 | 1 to 759 | 759/972 (78 %) | 23 diff (97.7 %id) | |||
| BG911254 | anaplastic oligodendroglioma with 1p/19qloss, brain | .b | 676 to 1363 | 1 to 687 | 687/687 (100 %) | 9 diff (98.7 %id) | |||
| CN390159 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .b | 738 to 1403 | 1 to 666 | 666/666 (100 %) | 2 diff (99.7 %id) | |||
| BG748455 | eye, normal pigmented retinal epithelium | .b | 814 to 1554 | 1 to 736 | 736/736 (100 %) | 7 diff (99.1 %id) | |||
| BG106308 | lymph, lymphoma, cell line | .b | 900 to 1604 | 1 to 709 | AAA | 709/1009 (70 %) | 11 diff (99.0 %id) | ||
| BF314883 | brain, neuroblastoma | .b | 1024 to 1752 | 1 to 726 | 726/870 (83 %) | 23 diff (97.4 %id) | |||
| BI196226 | brain, neuroblastoma | .b | 1024 to 1640 | 1 to 617 | 617/617 (100 %) | 0 diff (100 %id) | |||
| BQ707490 | Spleen | .b | 1043 to 1933 | 1 to 892 | 892/894 (99 %) | 11 diff (98.8 %id) | |||
| BM800978 | melanotic melanoma, skin | .b | 1092 to 1799 | 1 to 708 | 708/1036 (68 %) | 9 diff (99.2 %id) | |||
| CO402182 | Chondrosarcoma Lung Metastasis cell lines, lung | .b | 1112 to 1780 | 1 to 665 | 665/844 (78 %) | 11 diff (98.7 %id) | |||
| CO246559 | Chondrosarcoma Lung Metastasis cell lines, lung | .b | 1149 to 1893 | 44 to 787 | 744/795 (93 %) | 15 diff (98.2 %id) | |||
| BQ071124 | brain, neuroblastoma, cell line | .b | 1216 to 2102 | 1 to 899 | 899/1008 (89 %) | 20 diff (98.1 %id) | |||
| BF312690 | brain, neuroblastoma | .b | 1226 to 1969 | 1 to 735 | 735/920 (79 %) | 14 diff (98.5 %id) | |||
| BE313325 | brain, neuroblastoma | .b | 1281 to 2029 | 1 to 752 | 752/876 (85 %) | 16 diff (98.2 %id) | |||
| BG753442 | eye, normal pigmented retinal epithelium | .b | 1292 to 2086 | 1 to 792 | 792/889 (89 %) | 23 diff (97.5 %id) | |||
| TI_59386539 | .b | 1440 to 2246 | 61 to 871 | 811/812 (99 %) | 11 diff (98.7 %id) | ||||
| BM008822 | adenocarcinoma, Pancreas | .b | 1441 to 2246 | 1 to 810 | 810/811 (99 %) | 11 diff (98.7 %id) | |||
| TI_154197383 | .b | 1473 to 2369 | 110 to 1003 | 894/979 (91 %) | 26 diff (97.4 %id) | ||||
| BF237602 | leiomyosarcoma cell line, uterus | .b | 1648 to 2432 | 1 to 783 | 783/792 (98 %) | 11 diff (98.7 %id) | |||
| BU190572 | melanotic melanoma, cell line, skin | .b | 1688 to 2500 | 22 to 841 | 818/872 (93 %) | 15 diff (98.3 %id) | |||
| BQ676354 | melanotic melanoma, cell line, skin | .b | 1688 to 2530 | 13 to 860 | 848/941 (90 %) | 19 diff (98.0 %id) | |||
| BQ681788 | melanotic melanoma, cell line, skin | .b | 1688 to 2532 | 22 to 871 | 850/948 (89 %) | 23 diff (97.6 %id) | |||
| BQ678124 | melanotic melanoma, cell line, skin | .b | 1688 to 2632 | 22 to 971 | 950/972 (97 %) | 25 diff (97.5 %id) | |||
| BQ877506 | melanotic melanoma, cell line, skin | .b | 1692 to 2482 | 1 to 796 | 796/869 (91 %) | 6 diff (99.4 %id) | |||
| BU179205 | melanotic melanoma, cell line, skin | .b | 1692 to 2596 | 1 to 908 | 908/914 (99 %) | 11 diff (98.8 %id) | |||
| BU161098 | melanotic melanoma, cell line, skin | .b | 1692 to 2540 | 1 to 850 | 850/932 (91 %) | 10 diff (99.0 %id) | |||
| BQ682063 | melanotic melanoma, cell line, skin | .b | 1692 to 2412 | 1 to 722 | 722/958 (75 %) | 15 diff (98.5 %id) | |||
| BQ684531 | melanotic melanoma, cell line, skin | .b | 1692 to 2535 | 1 to 846 | 846/925 (91 %) | 19 diff (98.0 %id) | |||
| BQ684193 | melanotic melanoma, cell line, skin | .b | 1692 to 2491 | 1 to 803 | 803/932 (86 %) | 14 diff (98.5 %id) | |||
| BU190883 | melanotic melanoma, cell line, skin | .b | 1692 to 2436 | 1 to 745 | 745/858 (86 %) | 6 diff (99.4 %id) | |||
| BQ679373 | melanotic melanoma, cell line, skin | .b | 1692 to 2613 | 1 to 925 | 925/925 (100 %) | 17 diff (98.2 %id) | |||
| BX441027 | brain, fetal brain | .b | 1753 to 2715 | 1 to 959 | 959/959 (100 %) | 5 diff (99.5 %id) | |||
| BE740533 | adenocarcinoma cell line, ovary | .b | 1779 to 2564 | 1 to 778 | 778/987 (78 %) | 17 diff (98.3 %id) | |||
| CA487784 | .b | 1809 to 2715 | 1 to 918 | 918/1006 (91 %) | 14 diff (98.7 %id) | ||||
| BM710474 | eye, RPE and Choroid | .b | 1822 to 2312 | 1 to 491 | 491/491 (100 %) | 0 diff (100 %id) | |||
| DR763115 | embryonic stem | .b | 1872 to 2529 | 1 to 658 | 658/658 (100 %) | 1 diff (99.9 %id) | |||
| CR985154 | T-Lymphocytes | .b | 1895 to 2451 | 1 to 557 | 557/559 (99 %) | 1 diff (99.9 %id) | |||
| CA454590 | .b | 1909 to 2713 | 1 to 812 | 812/897 (90 %) | 8 diff (99.2 %id) | ||||
| BQ052997 | blood, natural killer cells, cell line | .b | 1941 to 2633 | 1 to 700 | 700/1064 (65 %) | 25 diff (97.7 %id) | |||
| BE384979 | melanotic melanoma, skin | .b | 1969 to 2615 | 1 to 646 | 646/649 (99 %) | 2 diff (99.7 %id) | |||
| U69564 | whole brain | .b | 2028 to 4083 | 1 to 2054 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 2054/2054 (100 %) | 6 diff (99.8 %id) | |
| CR992145 | T-Lymphocytes | .b | 2092 to 2954 | 1 to 863 | 863/863 (100 %) | 8 diff (99.1 %id) | |||
| BG765647 | melanotic melanoma, high MDR (cell line), skin | .b | 2168 to 2994 | 1 to 829 | 829/829 (100 %) | 4 diff (99.6 %id) | |||
| CF272423 | Brain glioblastoma | .b | 2172 to 2957 | 1 to 791 | 789/870 (90 %) | 5 diff (99.5 %id) | |||
| BE710163 | head_neck | .b | 2186 to 2416 | 231 to 1 | 231/231 (100 %) | 0 diff (100 %id) | |||
| BX103993 | whole brain | .b | 2215 to 2748 | 1 to 534 | 534/534 (100 %) | 0 diff (100 %id) | |||
| BU155002 | melanotic melanoma, skin | .b | 2220 to 2993 | 1 to 780 | 780/902 (86 %) | 8 diff (99.2 %id) | |||
| BQ316378 | colon | .b | 2243 to 2864 | 1 to 622 | 622/622 (100 %) | 0 diff (100 %id) | |||
| AL135247 | melanoma (MeWo cell line) | .b | 2271 to 2540 | 1 to 270 | 270/270 (100 %) | 0 diff (100 %id) | |||
| BE740552 | adenocarcinoma cell line, ovary | .b | 2276 to 3128 | 1 to 841 | 841/978 (85 %) | 17 diff (98.3 %id) | |||
| BQ935053 | epidermoid carcinoma, cell line, lung | .b | 2313 to 3248 | 1 to 944 | 942/945 (99 %) | 17 diff (98.3 %id) | |||
| BQ922537 | epidermoid carcinoma, cell line, lung | .b | 2313 to 3195 | 1 to 894 | 894/937 (95 %) | 17 diff (98.2 %id) | |||
| CV802680 | Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass | .b | 2317 to 3045 | 1 to 715 | 717/827 (86 %) | 14 diff (98.4 %id) | |||
| BG029791 | breast, mammary adenocarcinoma, cell line | .b | 2318 to 3010 | 1 to 693 | 693/1057 (65 %) | 7 diff (99.4 %id) | |||
| F06591 | brain, total brain | .b | 2321 to 2690 | 1 to 369 | 369/369 (100 %) | 1 diff (99.8 %id) | |||
| BU174270 | melanotic melanoma, cell line, skin | .b | 2362 to 3130 | 25 to 793 | 769/975 (78 %) | 19 diff (98.1 %id) | |||
| BQ717098 | sympathetic trunk | .b | 2363 to 3176 | 1 to 827 | 827/834 (99 %) | 18 diff (97.9 %id) | |||
| BU190535 | melanotic melanoma, cell line, skin | .b | 2370 to 3176 | 1 to 818 | 818/844 (96 %) | 13 diff (98.5 %id) | |||
| BQ892619 | melanotic melanoma, cell line, skin | .b | 2370 to 3250 | 1 to 885 | 885/885 (100 %) | 9 diff (99.0 %id) | |||
| BQ676644 | melanotic melanoma, cell line, skin | .b | 2370 to 3190 | 1 to 828 | 828/973 (85 %) | 17 diff (98.3 %id) | |||
| BU185568 | melanotic melanoma, cell line, skin | .b | 2370 to 3195 | 1 to 831 | 831/949 (87 %) | 15 diff (98.5 %id) | |||
| BQ683654 | melanotic melanoma, cell line, skin | .b | 2370 to 3112 | 1 to 742 | 742/926 (80 %) | 15 diff (98.4 %id) | |||
| BQ681597 | melanotic melanoma, cell line, skin | .b | 2373 to 3206 | 19 to 855 | 837/920 (90 %) | 30 diff (96.8 %id) | |||
| CA489592 | .b | 2415 to 3260 | 1 to 849 | 847/851 (99 %) | 5 diff (99.5 %id) | ||||
| BM917113 | blood, natural killer cells, cell line | .b | 2443 to 3355 | 1 to 921 | 921/1092 (84 %) | 11 diff (99.0 %id) | |||
| BQ052874 | blood, natural killer cells, cell line | .b | 2443 to 3336 | 1 to 906 | 906/1051 (86 %) | 27 diff (97.5 %id) | |||
| CD673957 | eye, lens | .b | 2458 to 2843 | 1 to 386 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 386/386 (100 %) | 0 diff (100 %id) | ||
| BG679886 | skin, squamous cell carcinoma | .b | 2483 to 3190 | 1 to 706 | 706/706 (100 %) | 4 diff (99.5 %id) | |||
| BM786190 | stomach | .b | 2484 to 3075 | 1 to 592 | 592/592 (100 %) | 0 diff (100 %id) | |||
| TI_1948135353 | .b | 2503 to 3195 | 129 to 824 | 696/1235 (56 %) | 18 diff (98.6 %id) | ||||
| TI_1948135354 | .b | 2503 to 3197 | 127 to 820 | 694/1270 (54 %) | 17 diff (98.7 %id) | ||||
| TI_1948135716 | .b | 2503 to 3166 | 132 to 802 | 671/1310 (51 %) | 29 diff (97.8 %id) | ||||
| TI_1948136066 | .b | 2503 to 3197 | 125 to 821 | 697/1255 (55 %) | 23 diff (98.2 %id) | ||||
| TI_1948136067 | .b | 2503 to 3190 | 129 to 817 | 689/1289 (53 %) | 19 diff (98.6 %id) | ||||
| TI_1948136418 | .b | 2503 to 3193 | 126 to 816 | 691/1217 (56 %) | 10 diff (99.2 %id) | ||||
| BC014237 | Uterus, leiomyosarcoma | .b | 2506 to 4083 | 1 to 1578 | available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 1578/1578 (100 %) | 1 diff (100.0 %id) | |
| BI117168 | lung, small cell carcinoma | .b | 2514 to 3321 | 1 to 803 | 803/882 (91 %) | 22 diff (97.6 %id) | |||
| BG387511 | embryonal carcinoma, cell line, testis | .b | 2521 to 3290 | 1 to 759 | 759/940 (80 %) | 15 diff (98.5 %id) | |||
| CD514089 | brain, Pituitary | .b | 2583 to 3411 | 1 to 841 | 841/930 (90 %) | 25 diff (97.4 %id) | |||
| BM802985 | duodenal adenocarcinoma, cell line, small intestine | .b | 2610 to 3352 | 1 to 749 | 749/1099 (68 %) | 17 diff (98.5 %id) | |||
| BI256017 | cervical carcinoma cell line, cervix | .b | 2627 to 3298 | 1 to 672 | 672/672 (100 %) | 1 diff (99.9 %id) | |||
| AW250316 | lung, small cell carcinoma | .b | 2639 to 3103 | 10 to 474 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 465/474 (98 %) | 7 diff (98.6 %id) | ||
| BE741712 | adenocarcinoma cell line, ovary | .b | 2640 to 3514 | 1 to 874 | 874/945 (92 %) | 28 diff (97.1 %id) | |||
| BM708493 | eye, RPE and Choroid | .b | 2650 to 2952 | 1 to 301 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 301/301 (100 %) | 3 diff (99.1 %id) | ||
| BE906531 | epithelioid carcinoma, Pancreas | .b | 2658 to 3420 | 1 to 760 | 760/765 (99 %) | 11 diff (98.6 %id) | |||
| BM700068 | eye, lens | .b | 2674 to 3254 | 1 to 581 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 581/581 (100 %) | 1 diff (99.9 %id) | ||
| BI117491 | lung, small cell carcinoma | .b | 2693 to 3486 | 1 to 786 | 786/797 (98 %) | 13 diff (98.4 %id) | |||
| BM709299 | eye, optic nerve | .b | 2734 to 3073 | 1 to 340 | 340/340 (100 %) | 0 diff (100 %id) | |||
| BQ053840 | blood, natural killer cells, cell line | .b | 2774 to 3592 | 1 to 825 | 825/956 (86 %) | 8 diff (99.2 %id) | |||
| CN390141 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .b | 2833 to 3278 | 1 to 446 | 446/446 (100 %) | 0 diff (100 %id) | |||
| CX783646 | human embryonic stem cells | .b | 2837 to 3618 | 1 to 781 | 781/781 (100 %) | 1 diff (99.9 %id) | |||
| BQ716979 | sympathetic trunk | .b | 2864 to 3709 | 1 to 859 | 859/861 (99 %) | 24 diff (97.3 %id) | |||
| BQ069201 | brain, neuroblastoma, cell line | .b | 2866 to 3760 | 1 to 896 | 896/1018 (88 %) | 9 diff (99.2 %id) | |||
| BM473514 | melanotic melanoma, skin | .b | 2884 to 3872 | 8 to 1004 | 997/1105 (90 %) | 24 diff (97.9 %id) | |||
| CA489882 | .b | 2884 to 3752 | 26 to 899 | 874/925 (94 %) | 17 diff (98.2 %id) | ||||
| BQ943356 | brain, neuroblastoma, cell line | .b | 2914 to 3842 | 1 to 931 | 931/937 (99 %) | 19 diff (98.0 %id) | |||
| BU171814 | melanotic melanoma, skin | .b | 2919 to 3753 | 16 to 861 | 846/861 (98 %) | 23 diff (97.4 %id) | |||
| AA310536 | .b | 2935 to 3223 | 1 to 289 | 289/289 (100 %) | 0 diff (100 %id) | ||||
| TI_57177245 | .b | 2935 to 3742 | 26 to 831 | 806/831 (96 %) | 14 diff (98.4 %id) | ||||
| BI831017 | brain, medulla | .b | 2937 to 3742 | 1 to 805 | 805/805 (100 %) | 9 diff (98.9 %id) | |||
| BE294282 | muscle, rhabdomyosarcoma | .b | 2977 to 3623 | 1 to 646 | 646/647 (99 %) | 7 diff (99.0 %id) | |||
| BI092474 | cervix | .b | 3012 to 3734 | 1 to 723 | 723/724 (99 %) | 3 diff (99.6 %id) | |||
| BQ644225 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3760 | 12 to 735 | 724/873 (82 %) | 18 diff (98.0 %id) | |||
| BQ647505 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3998 | 9 to 974 | 966/974 (99 %) | 20 diff (98.0 %id) | |||
| BQ647260 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3874 | 8 to 845 | 838/881 (95 %) | 16 diff (98.2 %id) | |||
| BQ650491 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3874 | 9 to 853 | 845/914 (92 %) | 16 diff (98.3 %id) | |||
| BQ649224 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3874 | 8 to 850 | 843/943 (89 %) | 29 diff (97.0 %id) | |||
| BQ651310 | hepatocellular carcinoma, cell line, Liver | .b | 3038 to 3874 | 8 to 849 | 842/996 (84 %) | 21 diff (97.9 %id) | |||
| BQ653267 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3760 | 1 to 714 | 714/931 (76 %) | 10 diff (99.0 %id) | |||
| BQ648635 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3713 | 1 to 665 | 665/956 (69 %) | 25 diff (97.4 %id) | |||
| BQ649965 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3925 | 1 to 891 | 891/904 (98 %) | 42 diff (95.4 %id) | |||
| BQ645225 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3872 | 1 to 837 | 837/858 (97 %) | 20 diff (97.7 %id) | |||
| BQ645880 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3805 | 1 to 766 | 766/904 (84 %) | 8 diff (99.2 %id) | |||
| BQ653936 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3952 | 1 to 914 | 914/915 (99 %) | 31 diff (96.7 %id) | |||
| BQ646423 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 4000 | 1 to 955 | 955/956 (99 %) | 15 diff (98.5 %id) | |||
| BQ876525 | hepatocellular carcinoma, cell line, Liver | .b | 3048 to 3869 | 1 to 825 | 825/861 (95 %) | 8 diff (99.1 %id) | |||
| CD674466 | eye, lens | .b | 3070 to 3653 | 1 to 584 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 584/584 (100 %) | 0 diff (100 %id) | ||
| CD674616 | eye, lens | .b | 3070 to 3159 | 1 to 90 | 90/90 (100 %) | 0 diff (100 %id) | |||
| AL578271 | placenta | .b | 3084 to 4049 | 960 to 1 | 960/960 (100 %) | 14 diff (98.6 %id) | |||
| TI_154135335 | .b | 3084 to 4083 | 1074 to 89 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 988/1026 (96 %) | 33 diff (96.8 %id) | ||
| CB159844 | Liver | .b | 3133 to 3737 | 1 to 605 | 605/605 (100 %) | 0 diff (100 %id) | |||
| AW176593 | colon | .b | 3169 to 3427 | 259 to 1 | 259/259 (100 %) | 0 diff (100 %id) | |||
| BU192945 | eye, retinoblastoma | .b | 3177 to 4029 | 1 to 867 | 867/889 (97 %) | 35 diff (96.1 %id) | |||
| BI160809 | epithelioid carcinoma cell line, Pancreas | .b | 3201 to 3890 | 1 to 692 | 692/952 (72 %) | 5 diff (99.5 %id) | |||
| TI_154135353 | .b | 3224 to 4083 | 929 to 77 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 853/984 (86 %) | 17 diff (98.3 %id) | ||
| BX455037 | brain, fetal brain | .b | 3227 to 4071 | 869 to 9 | 861/894 (96 %) | 26 diff (97.1 %id) | |||
| CD674326 | eye, lens | .b | 3246 to 3684 | 1 to 439 | 439/439 (100 %) | 0 diff (100 %id) | |||
| CN390152 | embryonic stem cells, cell lines H1, H7, andH9 | .b | 3286 to 4029 | 11 to 754 | 744/754 (98 %) | 7 diff (99.1 %id) | |||
| BM707362 | eye, eye anterior segment | .b | 3309 to 3708 | 9 to 408 | fully sequenced, | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 400/408 (98 %) | 1 diff (99.8 %id) | |
| BG764992 | melanotic melanoma, high MDR (cell line), skin | .b | 3334 to 4063 | 1 to 731 | 731/732 (99 %) | 5 diff (99.4 %id) | |||
| BQ233869 | epithelioid carcinoma, Pancreas | .b | 3351 to 4083 | 756 to 22 | AAA | Submitted on the opposite strand | 735/875 (84 %) | 7 diff (99.2 %id) | |
| AI697628 | carcinoid, lung | .b | 3374 to 3819 | 446 to 1 | 446/446 (100 %) | 0 diff (100 %id) | |||
| BF341878 | brain, glioblastoma with EGFR amplification | .b | 3409 to 4084 | 1 to 677 | AAA | 677/691 (97 %) | 3 diff (99.6 %id) | ||
| TI_149285548 | .b | 3412 to 4083 | 756 to 85 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 672/672 (100 %) | 1 diff (99.9 %id) | ||
| TI_154023099 | .b | 3423 to 4083 | 750 to 90 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 661/661 (100 %) | 1 diff (99.9 %id) | ||
| BU608014 | Human Lung Epithelial cells, lung | .b | 3426 to 4083 | 676 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 658/658 (100 %) | 0 diff (100 %id) | |
| BM971467 | lung | .b | 3497 to 4083 | 605 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 587/587 (100 %) | 0 diff (100 %id) | |
| BU737869 | eye, lens | .b | 3497 to 4083 | 605 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 587/587 (100 %) | 1 diff (99.9 %id) | |
| CA439325 | lung, Metastatic Chondrosarcoma | .b | 3497 to 4083 | 605 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 587/587 (100 %) | 0 diff (100 %id) | |
| CD368247 | Alveolar Macrophage, lung | .b | 3505 to 4086 | 600 to 19 | tiling clone, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 582/582 (100 %) | 0 diff (100 %id) | |
| CA426688 | cell lines, Chondrosarcoma | .b | 3506 to 4083 | 596 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 578/578 (100 %) | 0 diff (100 %id) | |
| AI815879 | brain, frontal lobe | .b | 3545 to 4084 | 548 to 9 | 540/548 (98 %) | 0 diff (100 %id) | |||
| BE349448 | malignant melanoma, metastatic to lymphnode, skin | .b | 3549 to 4081 | 533 to 1 | 533/533 (100 %) | 0 diff (100 %id) | |||
| BU732445 | eye, optic nerve | .b | 3550 to 4078 | 552 to 24 | AAA | 529/534 (99 %) | 0 diff (100 %id) | ||
| CB217755 | mandible, pooled | .b | 3575 to 4083 | 1 to 509 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 509/509 (100 %) | 0 diff (100 %id) | |
| AW071607 | pooled germ cell tumors | .b | 3592 to 4083 | 492 to 1 | 492/492 (100 %) | 0 diff (100 %id) | |||
| AW006629 | colon | .b | 3593 to 4084 | 492 to 1 | 492/492 (100 %) | 0 diff (100 %id) | |||
| AW029278 | poorly differentiated adenocarcinoma withsignet ring cell features, stomach | .b | 3593 to 4084 | 492 to 1 | 492/492 (100 %) | 0 diff (100 %id) | |||
| DB527551 | testis | .b | 3616 to 4083 | 1 to 468 | Submitted on the opposite strand | 468/468 (100 %) | 0 diff (100 %id) | ||
| CD673956 | eye, lens | .b | 3621 to 4079 | 476 to 18 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 459/459 (100 %) | 1 diff (99.8 %id) | |
| DB522729 | testis | .b | 3622 to 4077 | 1 to 456 | Submitted on the opposite strand | 456/456 (100 %) | 0 diff (100 %id) | ||
| AW250994 | lung, small cell carcinoma | .b | 3625 to 4083 | 469 to 11 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 459/459 (100 %) | 0 diff (100 %id) | |
| BQ008273 | Chondrosarcoma, Left Pelvis | .b | 3626 to 4083 | 476 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 458/458 (100 %) | 0 diff (100 %id) | |
| CN390156 | embryonic stem cells, DMSO-treated H9 cellline | .b | 3638 to 4079 | 1 to 442 | 442/442 (100 %) | 0 diff (100 %id) | |||
| AI929185 | brain, frontal lobe | .b | 3651 to 4084 | 442 to 9 | 434/442 (98 %) | 0 diff (100 %id) | |||
| BQ188007 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .b | 3676 to 4083 | 1 to 408 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 408/408 (100 %) | 0 diff (100 %id) | |
| BM673473 | eye, eye anterior segment | .b | 3678 to 4083 | 424 to 19 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 406/406 (100 %) | 2 diff (99.6 %id) | |
| CN390161 | embryonic stem cells, DMSO-treated H9 cellline | .b | 3683 to 3989 | 1 to 307 | 307/307 (100 %) | 0 diff (100 %id) | |||
| BM671932 | eye, RPE and Choroid | .b | 3684 to 4078 | 418 to 24 | AAA | 395/400 (98 %) | 3 diff (99.3 %id) | ||
| AJ710636 | heart | .b | 3699 to 4083 | 1 to 385 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 385/385 (100 %) | 0 diff (100 %id) | |
| BG331948 | large cell carcinoma, lung | .b | 3723 to 4083 | 1 to 361 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 361/361 (100 %) | 0 diff (100 %id) | |
| CB217754 | mandible, pooled | .b | 3727 to 4083 | 401 to 45 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 357/357 (100 %) | 0 diff (100 %id) | |
| BG759170 | B-cells, primary B-cells from tonsils (cell line) | .b | 3739 to 4083 | 1 to 345 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 345/345 (100 %) | 0 diff (100 %id) | |
| CD674465 | eye, lens | .b | 3757 to 4082 | 353 to 28 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 326/330 (98 %) | 3 diff (99.1 %id) | |
| AI244327 | Kidney | .b | 3765 to 4084 | 320 to 1 | 320/320 (100 %) | 0 diff (100 %id) | |||
| Z39572 | brain, total brain | .b | 3772 to 4083 | 311 to 1 | 311/311 (100 %) | 1 diff (99.7 %id) | |||
| BU730799 | eye, RPE and Choroid | .b | 3803 to 4083 | 299 to 19 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 281/281 (100 %) | 0 diff (100 %id) | |
| AI648464 | ovary, tumor, 5 pooled (see description) | .b | 3834 to 4084 | 251 to 1 | 251/251 (100 %) | 0 diff (100 %id) | |||
| DV459028 | cochlea, ear | .b | 3918 to 4035 | 118 to 1 | Submitted on the opposite strand | 118/118 (100 %) | 0 diff (100 %id) | ||
| AA016091 | eye, retina | .b | 3957 to 4077 | 121 to 1 | Submitted on the opposite strand | 121/121 (100 %) | 0 diff (100 %id) | ||
| AI344056 | colon, colon tumor, RER+ | .b | 3993 to 4082 | 90 to 1 | 90/90 (100 %) | 0 diff (100 %id) | |||
| NM_014966.3 | .c | 1 to 4115 | 1 to 4115 | exact | RefSeq, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 4115/4115 (100 %) | 0 diff (100 %id) | |
| DB444698 | testis | .c | 153 to 575 | 1 to 423 | tiling clone, | 423/423 (100 %) | 3 diff (99.3 %id) | ||
| DB453077 | testis | .c | 172 to 674 | 1 to 503 | 503/503 (100 %) | 1 diff (99.9 %id) | |||
| AK291266 | .c | 226 to 4112 | 1 to 3887 | I518T G742D | 3887/3887 (100 %) | 4 diff (99.9 %id) | |||
| DB462117 | testis | .c | 227 to 710 | 1 to 485 | 485/489 (99 %) | 3 diff (99.4 %id) | |||
| DA757687 | .c | 227 to 780 | 2 to 556 | capped | 555/557 (99 %) | 3 diff (99.5 %id) | |||
| DB445899 | testis | .c | 247 to 710 | 1 to 462 | 462/465 (99 %) | 3 diff (99.4 %id) | |||
| DB458920 | testis | .c | 247 to 701 | 1 to 455 | 455/455 (100 %) | 0 diff (100 %id) | |||
| BI832242 | brain, medulla | .c | 251 to 788 | 1 to 540 | 540/542 (99 %) | 10 diff (98.2 %id) | |||
| TI_57176439 | .c | 251 to 788 | 1 to 540 | 540/542 (99 %) | 10 diff (98.2 %id) | ||||
| BC038417 | Brain, adult medulla | .c | 254 to 4112 | 1 to 3859 | exact | available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 3859/3859 (100 %) | 1 diff (100.0 %id) |
| BC015029 | Uterus, leiomyosarcoma | .c | 255 to 4112 | 1 to 3858 | exact | tiling clone, available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 3858/3858 (100 %) | 0 diff (100 %id) |
| BM146460 | leukopheresis | .c | 255 to 600 | 1 to 346 | 346/346 (100 %) | 3 diff (99.2 %id) | |||
| DB463216 | hippocampus | .c | 275 to 623 | 1 to 348 | 348/348 (100 %) | 12 diff (96.6 %id) | |||
| BE886425 | leiomyosarcoma, uterus | .c | 276 to 803 | 1 to 533 | 531/700 (75 %) | 9 diff (98.8 %id) | |||
| CA391835 | eye, RPE/choroid | .c | 302 to 661 | 51 to 410 | 360/410 (87 %) | 8 diff (98.1 %id) | |||
| DB459339 | testis | .c | 558 to 1039 | 1 to 482 | 482/482 (100 %) | 0 diff (100 %id) | |||
| DB461673 | testis | .c | 558 to 1033 | 1 to 476 | 476/476 (100 %) | 1 diff (99.8 %id) | |||
| DB452025 | testis | .d | 1 to 497 | 1 to 497 | tiling clone, | 497/497 (100 %) | 1 diff (99.8 %id) | ||
| BG723223 | testis | .d | 16 to 629 | 1 to 616 | 616/706 (87 %) | 23 diff (96.8 %id) | |||
| DB457282 | testis | .d | 31 to 499 | 1 to 469 | 469/469 (100 %) | 0 diff (100 %id) | |||
| DA454883 | tongue, tumor tissue | .d | 41 to 601 | 2 to 562 | tiling clone, capped | 561/561 (100 %) | 1 diff (99.9 %id) | ||
| DA874497 | Prostate | .d | 52 to 462 | 2 to 412 | capped | 411/411 (100 %) | 0 diff (100 %id) | ||
| AI971425 | pooled germ cell tumors | .d | 100 to 638 | 538 to 1 | 538/538 (100 %) | 16 diff (97.1 %id) | |||
| BI562729 | testis | .d | 545 to 1367 | 1 to 823 | tiling clone, | 821/936 (87 %) | 52 diff (94.5 %id) | ||
| TI_44351232 | .d | 547 to 1367 | 136 to 956 | 819/1069 (76 %) | 50 diff (95.4 %id) | ||||
| DR000672 | fetal brain | .d | 602 to 1168 | 1 to 569 | 569/569 (100 %) | 7 diff (98.8 %id) | |||
| BG717956 | testis | .d | 607 to 1330 | 1 to 722 | 722/723 (99 %) | 11 diff (98.5 %id) | |||
| BM172229 | testis | .d | 607 to 1176 | 1 to 580 | 536/580 (92 %) | 13 diff (97.8 %id) | |||
| BI562582 | testis | .d | 607 to 1292 | 1 to 683 | 683/683 (100 %) | 7 diff (99.0 %id) | |||
| TI_44350998 | .d | 608 to 1292 | 133 to 814 | 682/814 (83 %) | 10 diff (98.8 %id) | ||||
| DB081626 | testis | .d | 611 to 1119 | 2 to 510 | capped | 509/509 (100 %) | 2 diff (99.7 %id) | ||
| DA622441 | Kidney | .d | 613 to 1149 | 2 to 538 | capped | 537/537 (100 %) | 2 diff (99.7 %id) | ||
| DA713842 | .d | 613 to 1160 | 2 to 549 | capped | 548/548 (100 %) | 0 diff (100 %id) | |||
| DA692583 | .d | 617 to 1182 | 2 to 567 | capped | 566/566 (100 %) | 1 diff (99.9 %id) | |||
| DB450707 | testis | .d | 618 to 1081 | 1 to 464 | 464/465 (99 %) | 8 diff (98.3 %id) | |||
| BG717465 | testis | .d | 620 to 1389 | 9 to 777 | 769/798 (96 %) | 36 diff (95.5 %id) | |||
| BI462964 | testis | .d | 622 to 1320 | 1 to 705 | 702/705 (99 %) | 25 diff (96.5 %id) | |||
| BI463314 | testis | .d | 622 to 1320 | 1 to 701 | 701/701 (100 %) | 14 diff (98.1 %id) | |||
| CN357999 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .d | 624 to 1002 | 1 to 379 | 379/379 (100 %) | 1 diff (99.8 %id) | |||
| CD109598 | Human Placenta, placenta | .d | 625 to 1300 | 28 to 708 | 681/755 (90 %) | 11 diff (98.6 %id) | |||
| CF994324 | Human Placenta, placenta | .d | 625 to 1298 | 29 to 701 | 673/714 (94 %) | 13 diff (98.2 %id) | |||
| BU553757 | ovary, teratocarcinoma, cell line | .d | 628 to 1287 | 33 to 697 | 665/1036 (64 %) | 17 diff (98.4 %id) | |||
| DA239801 | brain | .d | 629 to 1162 | 2 to 535 | capped | 534/534 (100 %) | 0 diff (100 %id) | ||
| BQ070878 | brain, neuroblastoma, cell line | .d | 629 to 1508 | 1 to 879 | tiling clone, | 879/1016 (86 %) | 13 diff (98.8 %id) | ||
| CN357995 | embryonic stem cells, cell lines H1, H7, andH9 | .d | 630 to 1087 | 1 to 459 | 459/459 (100 %) | 7 diff (98.5 %id) | |||
| CN357997 | embryonic stem cells, cell lines H1, H7, andH9 | .d | 630 to 1048 | 1 to 419 | 419/419 (100 %) | 1 diff (99.8 %id) | |||
| BG335538 | choriocarcinoma, placenta | .d | 631 to 1294 | 1 to 662 | 662/663 (99 %) | 10 diff (98.5 %id) | |||
| DA701200 | .d | 635 to 1087 | 2 to 454 | capped | 453/467 (97 %) | 2 diff (99.6 %id) | |||
| DA306360 | hippocampus | .d | 637 to 1184 | 2 to 549 | capped | 548/548 (100 %) | 0 diff (100 %id) | ||
| N26265 | melanocyte | .d | 640 to 1065 | 1 to 425 | Submitted on the opposite strand | 425/425 (100 %) | 13 diff (97.0 %id) | ||
| AA015964 | eye, retina | .d | 640 to 1037 | 1 to 397 | Submitted on the opposite strand | 397/397 (100 %) | 12 diff (97.0 %id) | ||
| AI097043 | uterus | .d | 640 to 1132 | 1 to 493 | Submitted on the opposite strand | 493/493 (100 %) | 3 diff (99.4 %id) | ||
| AI568540 | anaplastic oligodendroglioma, brain | .d | 640 to 1156 | 1 to 517 | Submitted on the opposite strand | 517/518 (99 %) | 2 diff (99.7 %id) | ||
| AW024763 | Kidney | .d | 640 to 1162 | 1 to 522 | Submitted on the opposite strand | 522/522 (100 %) | 1 diff (99.9 %id) | ||
| AW207396 | .d | 641 to 1054 | 1 to 414 | Submitted on the opposite strand | 414/414 (100 %) | 2 diff (99.6 %id) | |||
| BI545634 | brain, hippocampus | .d | 642 to 1367 | 1 to 715 | 715/718 (99 %) | 27 diff (96.3 %id) | |||
| TI_44165714 | .d | 650 to 1367 | 150 to 856 | 707/859 (82 %) | 26 diff (97.0 %id) | ||||
| BM553968 | brain, medulla | .d | 653 to 1396 | 1 to 746 | 746/1039 (71 %) | 26 diff (97.5 %id) | |||
| BF431634 | Kidney | .d | 658 to 1275 | 1 to 618 | Submitted on the opposite strand | 618/618 (100 %) | 7 diff (98.9 %id) | ||
| CR987977 | T-Lymphocytes | .d | 660 to 1245 | 1 to 586 | 586/588 (99 %) | 4 diff (99.4 %id) | |||
| BG424809 | Kidney, renal cell adenocarcinoma | .d | 671 to 1317 | 1 to 649 | 649/649 (100 %) | 8 diff (98.8 %id) | |||
| CN357996 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .d | 678 to 997 | 1 to 320 | 320/320 (100 %) | 1 diff (99.7 %id) | |||
| CN357998 | embryonic stem cells, cell lines H1, H7, andH9 | .d | 679 to 1041 | 1 to 363 | 363/363 (100 %) | 0 diff (100 %id) | |||
| BP872318 | embryonal kidney | .d | 679 to 1256 | 1 to 581 | 581/581 (100 %) | 7 diff (98.8 %id) | |||
| BE387209 | melanotic melanoma, skin | .d | 679 to 1281 | 57 to 679 | 618/685 (90 %) | 45 diff (93.5 %id) | |||
| BF002879 | Prostate | .d | 690 to 952 | 12 to 278 | Submitted on the opposite strand | 267/278 (96 %) | 6 diff (97.9 %id) | ||
| AA760791 | germinal center B cell | .d | 705 to 1066 | 1 to 362 | Submitted on the opposite strand | 362/362 (100 %) | 9 diff (97.6 %id) | ||
| DB453665 | testis | .d | 732 to 1232 | 1 to 501 | 501/502 (99 %) | 1 diff (99.9 %id) | |||
| CO245964 | Chondrosarcoma Lung Metastasis cell lines, lung | .d | 768 to 1389 | 1 to 620 | 620/812 (76 %) | 14 diff (98.3 %id) | |||
| BF984839 | duodenal adenocarcinoma, cell line, small intestine | .d | 781 to 1484 | 1 to 702 | 702/777 (90 %) | 18 diff (97.7 %id) | |||
| BU500183 | .d | 781 to 1656 | 12 to 892 | tiling clone, | 881/903 (97 %) | 19 diff (97.9 %id) | |||
| BG661326 | Islets of Langerhans, Pancreas | .e | 1 to 591 | 1 to 591 | tiling clone, | 591/591 (100 %) | 2 diff (99.7 %id) | ||
| BI199708 | brain, neuroblastoma | .e | 130 to 960 | 1 to 837 | 837/837 (100 %) | 29 diff (96.6 %id) | |||
| BE260182 | brain, neuroblastoma | .e | 149 to 730 | 1 to 584 | tiling clone, | 584/587 (99 %) | 6 diff (99.0 %id) | ||
| BE312303 | brain, neuroblastoma | .e | 149 to 682 | 1 to 534 | 534/534 (100 %) | 0 diff (100 %id) | |||
| BF568110 | epithelioid carcinoma cell line, Pancreas | .e | 655 to 1453 | 1 to 828 | tiling clone, | 828/988 (83 %) | 15 diff (98.5 %id) | ||
| BQ707019 | Spleen | .f-u | 1 to 833 | 10 to 850 | tiling clone, | 848/968 (87 %) | 20 diff (98.0 %id) | ||
| TI_154195750 | .f-u | 309 to 1110 | 68 to 864 | 797/1019 (78 %) | 48 diff (95.3 %id) | ||||
| BG329088 | eye, retinoblastoma | .f-u | 310 to 1100 | 1 to 783 | 783/783 (100 %) | 31 diff (96.1 %id) | |||
| BG472912 | eye, retinoblastoma | .f-u | 310 to 1054 | 1 to 760 | 760/760 (100 %) | 29 diff (96.2 %id) | |||
| BG474185 | eye, retinoblastoma | .f-u | 310 to 784 | 1 to 476 | 476/476 (100 %) | 4 diff (99.2 %id) | |||
| BE900626 | choriocarcinoma, placenta | .f-u | 316 to 972 | 14 to 662 | 649/961 (67 %) | 19 diff (98.1 %id) | |||
| CT002226 | T-Lymphocytes | .f-u | 319 to 868 | 1 to 550 | 550/550 (100 %) | 3 diff (99.5 %id) | |||
| BE251705 | eye, retinoblastoma | .f-u | 330 to 1033 | 1 to 702 | 702/756 (92 %) | 8 diff (99.0 %id) | |||
| BG831146 | epithelioid carcinoma cell line, Pancreas | .f-u | 341 to 1105 | 1 to 766 | 766/766 (100 %) | 5 diff (99.4 %id) | |||
| TI_154195732 | .f-u | 368 to 1139 | 22 to 788 | 767/1031 (74 %) | 25 diff (97.6 %id) | ||||
| BU196575 | melanotic melanoma, cell line, skin | .f-u | 482 to 1149 | 22 to 689 | tiling clone, | 668/848 (78 %) | 2 diff (99.8 %id) | ||
| BQ680701 | melanotic melanoma, cell line, skin | .f-u | 486 to 1154 | 1 to 671 | tiling clone, | 671/916 (73 %) | 10 diff (99.0 %id) | ||
| BQ682090 | melanotic melanoma, cell line, skin | .f-u | 486 to 780 | 1 to 295 | 295/295 (100 %) | 0 diff (100 %id) | |||
| BQ680772 | melanotic melanoma, cell line, skin | .f-u | 486 to 1155 | 1 to 673 | 673/898 (74 %) | 13 diff (98.6 %id) | |||
| AK096791 | Prostate | .g | 1 to 1957 | 1 to 1957 | R198G | tiling clone, available from FLJ, | 1957/1957 (100 %) | 1 diff (100.0 %id) | |
| DA875134 | Prostate | .g | 2 to 553 | 2 to 553 | capped | 552/552 (100 %) | 0 diff (100 %id) | ||
| CD242427 | brain, Pituitary | .g | 661 to 1223 | 7 to 574 | tiling clone, | 568/967 (58 %) | 9 diff (99.1 %id) | ||
| BM715079 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .g | 956 to 1102 | 1 to 147 | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 147/147 (100 %) | 1 diff (99.4 %id) | ||
| BF372128 | prostate_tumor | .g | 1123 to 1400 | 283 to 9 | 275/283 (97 %) | 0 diff (100 %id) | |||
| BU739985 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .g | 1341 to 1957 | 636 to 20 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 617/618 (99 %) | 0 diff (100 %id) | |
| DB330105 | Prostate | .g | 1422 to 1957 | 537 to 1 | 537/537 (100 %) | 1 diff (99.9 %id) | |||
| AA808524 | carcinoid, lung | .g | 1465 to 1956 | 492 to 1 | 492/492 (100 %) | 0 diff (100 %id) | |||
| BF435361 | pooled | .g | 1486 to 1962 | 477 to 1 | tiling clone, | 477/477 (100 %) | 1 diff (99.8 %id) | ||
| AW593272 | pooled | .g | 1488 to 1959 | 472 to 1 | 472/472 (100 %) | 3 diff (99.4 %id) | |||
| T06043 | .g | 1518 to 1828 | 312 to 1 | 312/312 (100 %) | 2 diff (99.4 %id) | ||||
| AW130650 | poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus | .g | 1527 to 1957 | 431 to 1 | 431/431 (100 %) | 3 diff (99.4 %id) | |||
| BF435997 | pooled | .g | 1617 to 1962 | 348 to 3 | 346/348 (99 %) | 0 diff (100 %id) | |||
| BM805408 | brain, hippocampus | .h | 1 to 902 | 24 to 929 | tiling clone, | 906/1081 (83 %) | 19 diff (98.3 %id) | ||
| TI_57184184 | .h | 289 to 1061 | 33 to 823 | 724/829 (87 %) | 42 diff (95.0 %id) | ||||
| BI767944 | pooled lung and spleen | .h | 290 to 1061 | 1 to 790 | 723/796 (90 %) | 39 diff (95.2 %id) | |||
| CR999350 | T-Lymphocytes | .h | 396 to 1110 | 1 to 717 | 717/720 (99 %) | 3 diff (99.6 %id) | |||
| BG336302 | choriocarcinoma, placenta | .h | 437 to 1225 | 1 to 789 | L170W R171A F172S I173S H174T ... | tiling clone, | 789/1077 (73 %) | 20 diff (98.2 %id) | |
| CN390153 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .h | 476 to 1169 | 1 to 695 | tiling clone, | 695/695 (100 %) | 2 diff (99.8 %id) | ||
| BG473667 | eye, retinoblastoma | .h | 476 to 1206 | 1 to 731 | tiling clone, | 731/731 (100 %) | 5 diff (99.4 %id) | ||
| CB154988 | brain | .h | 494 to 1134 | 1 to 641 | tiling clone, | 641/641 (100 %) | 0 diff (100 %id) | ||
| BX281666 | melanotic melanoma, skin | .h | 594 to 1071 | 1 to 478 | 478/478 (100 %) | 0 diff (100 %id) | |||
| CN390158 | embryonic stem cells, cell lines H1, H7, andH9 | .i | 1 to 576 | 12 to 587 | tiling clone, | 576/587 (98 %) | 6 diff (99.0 %id) | ||
| CN390157 | embryonic stem cells, cell lines H1, H7, andH9 | .i | 173 to 579 | 1 to 407 | 407/407 (100 %) | 4 diff (99.1 %id) | |||
| CN390162 | embryonic stem cells, cell lines H1, H7, andH9 | .i | 197 to 843 | 9 to 656 | 648/656 (98 %) | 7 diff (99.0 %id) | |||
| CN390149 | embryonic stem cells, cell lines H1, H7, andH9 | .i | 214 to 826 | 1 to 613 | 613/613 (100 %) | 0 diff (100 %id) | |||
| BP353036 | .i | 554 to 1147 | 1 to 594 | tiling clone, | 594/594 (100 %) | 0 diff (100 %id) | |||
| BP353060 | .i | 554 to 1130 | 1 to 577 | 577/583 (98 %) | 1 diff (99.9 %id) | ||||
| DA516049 | brain | .j | 1 to 540 | 2 to 542 | tiling clone, capped | 541/541 (100 %) | 3 diff (99.5 %id) | ||
| CF129133 | Chondrosarcoma Lung Metastasis cell lines, lung | .j | 385 to 949 | 1 to 565 | 565/565 (100 %) | 0 diff (100 %id) | |||
| TI_154190699 | .j | 385 to 956 | 51 to 622 | tiling clone, | 572/1018 (56 %) | 3 diff (99.8 %id) | |||
| BF957833 | nervous_normal | .j | 689 to 1032 | 1 to 347 | tiling clone, | 347/351 (98 %) | 25 diff (92.9 %id) | ||
| BM995919 | lung, Metastatic Chondrosarcoma | .k | 1 to 566 | 584 to 19 | exact | tiling clone, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 566/566 (100 %) | 0 diff (100 %id) |
| DB512158 | testis | .l | 1 to 426 | 2 to 427 | exact | tiling clone, | Submitted on the opposite strand | 427/427 (100 %) | 1 diff (99.8 %id) |
| BX437444 | thymus | .m | 1 to 864 | 8 to 870 | tiling clone, | 863/870 (99 %) | 6 diff (99.4 %id) | ||
| DW410624 | Liver | .m | 371 to 687 | 333 to 17 | tiling clone, | 317/333 (95 %) | 0 diff (100 %id) | ||
| BX437443 | thymus | .m | 1082 to 2019 | 937 to 1 | tiling clone, | 937/937 (100 %) | 2 diff (99.8 %id) | ||
| CN390146 | embryonic stem cells, cell lines H1, H7, andH9 | .n | 1 to 652 | 1 to 653 | C101S | tiling clone, | 653/653 (100 %) | 8 diff (98.8 %id) | |
| R63774 | placenta | .o | 1 to 323 | 10 to 332 | Y2D H12T K13S S14R T15L ... | tiling clone, fully sequenced, | 323/332 (97 %) | 10 diff (97.0 %id) | |
| R64546 | placenta | .o | 6 to 408 | 1 to 408 | tiling clone, | 408/422 (96 %) | 23 diff (94.6 %id) | ||
| BQ025785 | placenta | .o | 151 to 619 | 485 to 17 | tiling clone, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 469/469 (100 %) | 0 diff (100 %id) | |
| BQ026230 | placenta | .o | 269 to 619 | 366 to 16 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 351/351 (100 %) | 1 diff (99.8 %id) | |
| R63725 | placenta | .o | 297 to 617 | 320 to 1 | fully sequenced, | 320/320 (100 %) | 5 diff (98.5 %id) | ||
| DB461448 | testis | .p | 1 to 495 | 1 to 495 | exact | tiling clone, | 495/495 (100 %) | 0 diff (100 %id) | |
| BC047335 | Cervix, carcinoma | .q | 1 to 649 | 1 to 649 | exact | tiling clone, available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 649/649 (100 %) | 0 diff (100 %id) |
| BI253724 | cervical carcinoma cell line, cervix | .q | 3 to 672 | 1 to 672 | available from MGC, | 672/687 (97 %) | 19 diff (97.3 %id) | ||
| DB485279 | hypothalamus | .q | 230 to 691 | 1 to 462 | 462/462 (100 %) | 6 diff (98.8 %id) | |||
| BU568417 | testis | .q | 238 to 649 | 1 to 412 | 412/755 (54 %) | 4 diff (99.5 %id) | |||
| AV745053 | cord Blood | .q | 240 to 518 | 1 to 272 | 277/281 (98 %) | 9 diff (96.8 %id) | |||
| AJ712966 | bone marrow | .q | 241 to 660 | 11 to 432 | 422/432 (97 %) | 7 diff (98.4 %id) | |||
| AI264058 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .q | 247 to 669 | 425 to 3 | 423/425 (99 %) | 1 diff (99.8 %id) | |||
| DW419069 | Liver | .q | 250 to 648 | 10 to 409 | 400/409 (97 %) | 7 diff (98.3 %id) | |||
| TI_158432884 | .q | 251 to 680 | 525 to 96 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 430/844 (50 %) | 2 diff (99.8 %id) | ||
| CF528661 | placenta | .q | 251 to 680 | 449 to 20 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 430/436 (98 %) | 2 diff (99.6 %id) | |
| AI807342 | pooled | .q | 253 to 672 | 423 to 4 | 420/423 (99 %) | 0 diff (100 %id) | |||
| AA400692 | .q | 255 to 639 | 1 to 384 | 384/384 (100 %) | 1 diff (99.8 %id) | ||||
| AA626161 | .q | 255 to 672 | 420 to 4 | 417/420 (99 %) | 1 diff (99.8 %id) | ||||
| BQ185837 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .q | 267 to 673 | 1 to 407 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 407/407 (100 %) | 1 diff (99.8 %id) | |
| AI246365 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .q | 268 to 671 | 404 to 1 | 404/404 (100 %) | 0 diff (100 %id) | |||
| AI124080 | heart | .q | 277 to 671 | 395 to 1 | 395/395 (100 %) | 1 diff (99.8 %id) | |||
| BC063510 | Eye, retinoblastoma | .q | 288 to 1463 | 1 to 1174 | tiling clone, available from MGC, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 1174/1174 (100 %) | 2 diff (99.9 %id) | |
| CA314374 | Human Lung Epithelial cells, lung | .q | 298 to 665 | 368 to 1 | 368/377 (97 %) | 3 diff (99.3 %id) | |||
| AA906202 | pooled | .q | 302 to 669 | 374 to 7 | 368/387 (95 %) | 2 diff (99.5 %id) | |||
| BE781734 | eye, retinoblastoma | .q | 309 to 1025 | 1 to 713 | available from MGC, | 713/926 (76 %) | 69 diff (92.6 %id) | ||
| AA969154 | pooled | .q | 331 to 669 | 339 to 1 | 339/339 (100 %) | 1 diff (99.8 %id) | |||
| AA976773 | pooled germ cell tumors | .q | 338 to 669 | 346 to 15 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 332/332 (100 %) | 1 diff (99.7 %id) | |
| AA894926 | Kidney | .q | 346 to 669 | 331 to 8 | 324/331 (97 %) | 0 diff (100 %id) | |||
| AJ346049 | pectoral muscle (after mastectomy) | .q | 349 to 666 | 1 to 318 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 318/322 (98 %) | 2 diff (99.4 %id) | |
| AW087479 | pooled | .q | 354 to 669 | 323 to 8 | 316/323 (97 %) | 0 diff (100 %id) | |||
| AW004773 | colon | .q | 369 to 669 | 316 to 16 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 301/303 (99 %) | 0 diff (100 %id) | |
| BQ184154 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .q | 369 to 673 | 321 to 17 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 305/305 (100 %) | 1 diff (99.7 %id) | |
| BQ011379 | placenta | .q | 379 to 680 | 322 to 21 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 302/304 (99 %) | 0 diff (100 %id) | |
| CA311140 | Human Lung Epithelial cells, lung | .q | 421 to 665 | 245 to 1 | 245/245 (100 %) | 3 diff (98.8 %id) | |||
| BU589224 | mixed (pool of 40 RNAs) | .q | 436 to 673 | 1 to 238 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 238/240 (99 %) | 4 diff (98.4 %id) | |
| FN091387 | breast carcinoma | .q | 471 to 566 | 1 to 97 | 97/98 (98 %) | 2 diff (98.0 %id) | |||
| FN091303 | breast carcinoma | .q | 477 to 565 | 90 to 1 | Submitted on the opposite strand | 90/91 (98 %) | 1 diff (99.0 %id) | ||
| BQ012280 | placenta | .q | 522 to 682 | 176 to 16 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 161/161 (100 %) | 1 diff (99.4 %id) | |
| DB554303 | hypothalamus | .q | 978 to 1426 | 1 to 449 | Submitted on the opposite strand | 449/449 (100 %) | 8 diff (98.3 %id) | ||
| BX099937 | uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors | .q | 1011 to 1426 | 429 to 15 | AAA | Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) | 415/415 (100 %) | 1 diff (99.8 %id) | |
| AI368527 | anaplastic oligodendroglioma, brain | .q | 1018 to 1429 | 417 to 7 | 411/473 (86 %) | 0 diff (100 %id) | |||
| H67176 | nose, olfactory epithelium | .q | 1102 to 1410 | 1 to 309 | fully sequenced, | 309/309 (100 %) | 4 diff (98.8 %id) | ||
| AI560533 | uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors | .q | 1144 to 1428 | 284 to 1 | 284/284 (100 %) | 1 diff (99.7 %id) | |||
| AI692342 | carcinoid, lung | .q | 1157 to 1429 | 275 to 4 | 272/275 (98 %) | 0 diff (100 %id) | |||
| H67855 | nose, olfactory epithelium | .q | 1160 to 1401 | 251 to 1 | fully sequenced, | 251/251 (100 %) | 5 diff (98.1 %id) | ||
| H67761 | liver and spleen | .r | 1 to 464 | 1 to 475 | exact | tiling clone, | 475/490 (96 %) | 14 diff (97.2 %id) | |
| BF223264 | pooled germ cell tumors | .r | 331 to 715 | 482 to 98 | tiling clone, | 385/482 (79 %) | 0 diff (100 %id) | ||
| H67762 | liver and spleen | .r | 925 to 1271 | 366 to 6 | tiling clone, | 361/430 (83 %) | 18 diff (95.9 %id) | ||
| BX365108 | Placenta Cot 25-normalized | .s | 1 to 736 | 15 to 748 | C19X | tiling clone, | 734/748 (98 %) | 6 diff (99.2 %id) | |
| BI560707 | testis | .s | 137 to 657 | 1 to 522 | P24A T34S | 522/655 (79 %) | 10 diff (98.5 %id) | ||
| TI_44349697 | .s | 142 to 657 | 87 to 603 | P24A T34S | 517/736 (70 %) | 12 diff (98.4 %id) | |||
| BG722300 | testis | .t | 1 to 618 | 1 to 624 | P24S | tiling clone, | 622/624 (99 %) | 12 diff (98.1 %id) | |
| DB447003 | testis | .u | 1 to 424 | 1 to 424 | exact | tiling clone, | 424/424 (100 %) | 3 diff (99.3 %id) | |
| DA099274 | cerebellum | .u | 60 to 612 | 2 to 554 | exact | tiling clone, capped | 553/553 (100 %) | 0 diff (100 %id) | |
| DB462393 | testis | .va | 1 to 472 | 1 to 472 | exact | tiling clone, | 472/472 (100 %) | 0 diff (100 %id) | |
| T61496 | ovary | .vb-u | 1 to 135 | 134 to 1 | C35X V36S N37T P38L T39X ... | tiling clone, | 134/134 (100 %) | 1 diff (99.3 %id) | |
| AU157496 | placenta | Gene DHX30, variant not shown | Suspected internal deletion, this clone was ignored | ||||||
| AU138167 | placenta | Gene DHX30, variant not shown | capped | Suspected internal deletion, this clone was ignored |
| ? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes CI |