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Gene DEFB119TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
56 supporting clones for gene DEFB119 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_173460.1   .a 1 to 496 1 to 496 exact RefSeq, AAA   496/496
(100 %)
0 diff
(100 %id)
BI460707 testis .a 10 to 495 1 to 486   tiling clone, AAA   486/486
(100 %)
5 diff
(99.0 %id)
BQ429021 testis .a 56 to 496 1 to 441       441/836
(52 %)
4 diff
(99.6 %id)
BU567793 testis .a 58 to 563 1 to 507       507/831
(61 %)
17 diff
(98.0 %id)
BU852363 testis .a 59 to 497 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
AY501001 testis; epididymis .a 75 to 471 1 to 397       397/398
(99 %)
2 diff
(99.5 %id)
AA442458   .a 87 to 449 1 to 362       362/364
(99 %)
3 diff
(99.2 %id)
BE550563 pooled germ cell tumors .a 104 to 496 405 to 13   AAA   393/393
(100 %)
5 diff
(98.8 %id)
AA769984   .a 115 to 497 386 to 4   tiling clone,   383/386
(99 %)
0 diff
(100 %id)
AW236934 pooled germ cell tumors .a 144 to 495 353 to 2       352/353
(99 %)
0 diff
(100 %id)
BF478195 pooled germ cell tumors .a 144 to 495 355 to 4       352/355
(99 %)
0 diff
(100 %id)
AW291899   .a 170 to 495 343 to 18   AAA   326/326
(100 %)
3 diff
(99.1 %id)
AA807414 pooled germ cell tumors .a 223 to 496 285 to 12   AAA   274/274
(100 %)
1 diff
(99.7 %id)
BG204040   .a 239 to 496 26 to 283   AAA   258/283
(91 %)
6 diff
(97.9 %id)
AI001919   .a 348 to 497 158 to 9       150/162
(92 %)
0 diff
(100 %id)
NM_153323.3   .b 1 to 444 1 to 444 exact RefSeq, AAA   444/444
(100 %)
0 diff
(100 %id)
AY122473 pooled fetal lung, testis, B-cell .b 121 to 444 1 to 324 exact tiling clone, AAA   324/324
(100 %)
0 diff
(100 %id)
AF479699   .c 1 to 264 1 to 264 exact tiling clone,   264/264
(100 %)
0 diff
(100 %id)
AY122472 pooled fetal lung, testis, B-cell .d 1 to 456 1 to 456 V18X tiling clone, AAA   456/456
(100 %)
0 diff
(100 %id)
NM_153289.2   .d 1 to 456 1 to 456 exact RefSeq, AAA   456/456
(100 %)
0 diff
(100 %id)
BU853566 testis .d 11 to 455 1 to 445 exact AAA   445/445
(100 %)
4 diff
(99.2 %id)
BU854293 testis .d 11 to 457 1 to 447 exact     447/454
(98 %)
5 diff
(98.9 %id)
BC062212 testis .d 14 to 456 5 to 447 exact available from MGC, AAA   443/443
(100 %)
1 diff
(99.8 %id)
BU852390 testis .d 15 to 456 1 to 443 I63V     443/477
(92 %)
7 diff
(98.6 %id)
BU853309 testis .d 25 to 457 1 to 432 exact     432/437
(98 %)
5 diff
(98.9 %id)
AY358860   .d 29 to 456 1 to 428 exact     428/428
(100 %)
1 diff
(99.8 %id)
AI651078 pooled germ cell tumors .d 35 to 456 422 to 1 exact     422/422
(100 %)
1 diff
(99.8 %id)
AW193716 pooled germ cell tumors .d 35 to 457 424 to 2 Y5X     423/424
(99 %)
0 diff
(100 %id)
AA833735   .d 61 to 457 400 to 3 exact     398/400
(99 %)
1 diff
(99.8 %id)
BM702993 eye, human retina .d 62 to 382 1 to 321 K68X     321/321
(100 %)
1 diff
(99.7 %id)
AI656090 pooled germ cell tumors .d 65 to 457 397 to 5 exact     393/397
(98 %)
0 diff
(100 %id)
BE551605 pooled germ cell tumors .d 102 to 457 358 to 3 E43D     356/358
(99 %)
1 diff
(99.8 %id)
AW173087 pooled .d 104 to 455 352 to 1 exact     352/352
(100 %)
0 diff
(100 %id)
BF755659 colon .d 107 to 448 16 to 356 V18G C56Y     341/357
(95 %)
10 diff
(97.2 %id)
BF755660 colon .d 107 to 448 10 to 352 F7C L8F A9L I10P L11S ...     343/353
(97 %)
9 diff
(97.5 %id)
AA972135 pooled .d 109 to 457 355 to 7 exact     349/355
(98 %)
0 diff
(100 %id)
AW235353 pooled germ cell tumors .d 109 to 456 348 to 1 exact     348/348
(100 %)
1 diff
(99.8 %id)
AI807541 pooled .d 116 to 457 349 to 8 exact     342/349
(97 %)
0 diff
(100 %id)
AI631437 pooled germ cell tumors .d 120 to 456 337 to 1 exact     337/337
(100 %)
2 diff
(99.5 %id)
AF479698   .d 121 to 375 1 to 255 exact     255/255
(100 %)
0 diff
(100 %id)
AA910026 pooled .d 127 to 455 329 to 1       329/329
(100 %)
0 diff
(100 %id)
AI954833 pooled germ cell tumors .d 148 to 456 321 to 13   AAA   309/309
(100 %)
2 diff
(99.4 %id)
AW003815 pooled germ cell tumors .e 1 to 285 285 to 1 P5L L8F tiling clone,   285/285
(100 %)
6 diff
(97.9 %id)
AL732011 breast .f 1 to 329 329 to 1   tiling clone,   329/345
(95 %)
8 diff
(97.7 %id)
AL732301 breast .f 11 to 392 1 to 382 G32R tiling clone,   382/383
(99 %)
5 diff
(98.7 %id)
AI005061 pooled .f 82 to 510 433 to 5 exact tiling clone,   429/433
(99 %)
0 diff
(100 %id)
W26260 eye, retina .g-u -8 to 546 6 to 555 L47G G65X E73X G81X L86I ...     550/581
(94 %)
29 diff
(95.1 %id)
AL705973 human skeletal muscle .g-u 1 to 514 3 to 518 exact     518/520
(99 %)
5 diff
(99.1 %id)
DB069965 testis .g-u 1 to 492 2 to 493 G91X tiling clone, capped   492/492
(100 %)
0 diff
(100 %id)
DB070327 testis .g-u 1 to 530 2 to 531 exact capped   530/530
(100 %)
1 diff
(99.9 %id)
BM559648 brain, medulla .g-u 9 to 827 9 to 833 exact tiling clone,   825/1073
(76 %)
19 diff
(98.3 %id)
H92096 eye, retina .g-u 780 to 1157 1 to 380   tiling clone, fully sequenced,   380/380
(100 %)
3 diff
(99.3 %id)
BX106379 eye, retina .g-u 781 to 1575 1 to 796   tiling clone, AAA   796/796
(100 %)
4 diff
(99.5 %id)
AL709257 human skeletal muscle .g-u 951 to 1520 1 to 570   tiling clone,   570/570
(100 %)
2 diff
(99.7 %id)
H92063 eye, retina .g-u 1147 to 1563 421 to 1   fully sequenced,   421/421
(100 %)
9 diff
(97.9 %id)
AA834919   .g-u 1194 to 1575 385 to 4   tiling clone,   382/385
(99 %)
0 diff
(100 %id)
BU561156 testis Gene DEFB119, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes