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Gene DDX41TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
510 supporting clones for gene DDX41 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA171351 amygdala .a 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DB126513 thymus .a 28 to 594 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB202000 trachea .a 28 to 618 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BX444173 fetal liver, Liver .a 33 to 999 18 to 978       961/978
(98 %)
23 diff
(97.7 %id)
BQ898949 brain, neuroblastoma, cell line .a 34 to 862 1 to 830       830/913
(90 %)
8 diff
(99.2 %id)
AL542269 placenta .a 41 to 1087 1 to 1037   fully sequenced,   1037/1037
(100 %)
22 diff
(97.9 %id)
TI_154182600   .a 45 to 674 63 to 686       624/813
(76 %)
11 diff
(98.7 %id)
TI_154182630   .a 45 to 866 71 to 887       817/819
(99 %)
12 diff
(98.6 %id)
DA922380 small intestine .a 46 to 619 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
NM_016222.2   .a 47 to 2149 1 to 2103 exact RefSeq, AAA   2103/2103
(100 %)
1 diff
(100.0 %id)
DB184833 liver, tumor tissue .a 49 to 620 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
CV804152 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 50 to 846 1 to 804       804/837
(96 %)
24 diff
(97.2 %id)
AK027768 placenta .a 52 to 2149 1 to 2098 Q64E K165E L552Q available from FLJ,   2098/2098
(100 %)
5 diff
(99.8 %id)
AK315491   .a 52 to 1936 1 to 1885 exact     1885/1885
(100 %)
0 diff
(100 %id)
DA266716 caudate nucleus .a 52 to 618 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BP253426 Kidney .a 52 to 633 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP309016 brain .a 52 to 632 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BM787133 stomach .a 52 to 615 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BM789160 stomach .a 52 to 741 1 to 690       690/690
(100 %)
0 diff
(100 %id)
BM822152 stomach .a 52 to 184 1 to 132       132/132
(100 %)
6 diff
(95.5 %id)
BM835673 stomach .a 52 to 648 1 to 597       597/597
(100 %)
0 diff
(100 %id)
DA048646   .a 53 to 645 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA051210   .a 53 to 638 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA052044   .a 53 to 640 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA063437 cerebellum .a 53 to 620 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA090935 cerebellum .a 53 to 617 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA163699 amygdala .a 53 to 642 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA170801 amygdala .a 53 to 638 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA178958 amygdala .a 53 to 632 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA208215 brain .a 53 to 625 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA250754 caudate nucleus .a 53 to 628 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA253758 caudate nucleus .a 53 to 631 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA377952 thalamus .a 53 to 678 2 to 627   capped   626/626
(100 %)
0 diff
(100 %id)
DA423982   .a 53 to 625 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA448818 tongue, tumor tissue .a 53 to 618 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA534377 brain .a 53 to 635 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA539537 Kidney .a 53 to 634 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA693745   .a 53 to 621 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA745317   .a 53 to 626 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA749978   .a 53 to 620 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA751463   .a 53 to 619 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA914060   .a 53 to 630 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA939335 Spleen .a 53 to 643 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB018506 esophageal, tumor tissue .a 53 to 629 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB035722 testis .a 53 to 628 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB053168 testis .a 53 to 626 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB111411 thymus .a 53 to 624 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB114019 thymus .a 53 to 629 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB258901 uterus .a 53 to 628 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB266482 uterus .a 53 to 617 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA012284 adrenal gland .a 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
TI_45235831   .a 55 to 861 60 to 866       807/954
(84 %)
13 diff
(98.7 %id)
DA892487 rectum .a 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA930386 small intestine .a 57 to 656 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
BM152957 leukopheresis .a 57 to 494 1 to 438       438/438
(100 %)
11 diff
(97.5 %id)
TI_44165527   .a 58 to 627 117 to 688       572/688
(83 %)
8 diff
(98.9 %id)
DA005702   .a 61 to 626 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA088944 cerebellum .a 61 to 626 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA296826 hippocampus .a 61 to 638 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA382389 thalamus .a 61 to 626 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA645481   .a 61 to 638 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA880526   .a 61 to 708 2 to 649   capped   648/764
(84 %)
2 diff
(99.8 %id)
DA907954   .a 61 to 810 2 to 759   capped   758/765
(99 %)
15 diff
(98.1 %id)
TI_154176804   .a 61 to 554 80 to 580       499/596
(83 %)
20 diff
(96.7 %id)
DB243117 stomach, tumor tissue .a 61 to 629 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
AU142790   .a 61 to 812 2 to 757   capped   756/758
(99 %)
7 diff
(99.1 %id)
AK001255   .a 62 to 2149 1 to 2088 K56E A191T M352T available from FLJ,   2088/2088
(100 %)
6 diff
(99.8 %id)
AK222598 coronary artery .a 62 to 2131 1 to 2070 I531N     2070/2070
(100 %)
4 diff
(99.9 %id)
DA052008   .a 62 to 660 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
CR606489 Neuroblastoma Cot 50-normalized .a 62 to 2135 1 to 2074 exact tiling clone,   2074/2074
(100 %)
0 diff
(100 %id)
DA471288   .a 62 to 631 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA479082   .a 62 to 626 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA545095   .a 62 to 635 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BM471314 melanotic melanoma, skin .a 62 to 1070 1 to 1013       1013/1019
(99 %)
15 diff
(98.6 %id)
TI_57244100   .a 62 to 754 32 to 727       696/727
(95 %)
10 diff
(98.7 %id)
CR990772 T-Lymphocytes .a 62 to 939 1 to 878       878/878
(100 %)
0 diff
(100 %id)
DA007111   .a 63 to 641 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA019642   .a 63 to 635 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA030816   .a 63 to 629 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CB155838 brain .a 63 to 646 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DA052515   .a 63 to 638 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA084728 cerebellum .a 63 to 631 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA279103 corpus callosum .a 63 to 632 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA304947 hippocampus .a 63 to 638 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA311291 hippocampus .a 63 to 631 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA377208 thalamus .a 63 to 633 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA382897 thalamus .a 63 to 704 2 to 643   capped   642/642
(100 %)
0 diff
(100 %id)
DA485385 brain .a 63 to 634 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA520403 brain .a 63 to 629 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA584123 lung .a 63 to 657 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
BQ049316 lymph, lymphoma, cell line .a 63 to 996 1 to 943       943/1013
(93 %)
15 diff
(98.6 %id)
TI_57191730   .a 63 to 781 86 to 819       734/734
(100 %)
26 diff
(96.5 %id)
DA638101 Liver .a 63 to 627 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA816573   .a 63 to 643 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA828785 placenta .a 63 to 844 2 to 798   capped   795/798
(99 %)
22 diff
(97.3 %id)
DA933787 Spleen .a 63 to 631 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA935323 Spleen .a 63 to 654 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA935806 Spleen .a 63 to 649 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA939281 Spleen .a 63 to 654 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB030820 testis .a 63 to 649 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB172607 kidney, tumor tissue .a 63 to 631 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB205174 trachea .a 63 to 642 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB242118 stomach, tumor tissue .a 63 to 629 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB243262 stomach, tumor tissue .a 63 to 635 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB260162 uterus .a 63 to 632 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA019600   .a 64 to 629 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA020735   .a 64 to 630 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA050633   .a 64 to 631 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA050779   .a 64 to 648 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA051752   .a 64 to 665 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DA082060 cerebellum .a 64 to 638 2 to 576   capped   575/576
(99 %)
0 diff
(100 %id)
DA202315 brain .a 64 to 636 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA203194 brain .a 64 to 652 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA209695 brain .a 64 to 633 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA379868 thalamus .a 64 to 716 2 to 654   capped   653/653
(100 %)
0 diff
(100 %id)
DA531616 brain .a 64 to 670 2 to 608   capped   607/607
(100 %)
0 diff
(100 %id)
DA537841 Kidney .a 64 to 629 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
FN171822 breast carcinoma .a 64 to 147 10 to 93       84/93
(90 %)
6 diff
(93.6 %id)
DA552628   .a 64 to 634 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA586213 lung .a 64 to 666 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
BQ710793 Spleen .a 64 to 891 1 to 832       832/946
(87 %)
9 diff
(99.1 %id)
DA729402   .a 64 to 810 2 to 754   capped   753/771
(97 %)
11 diff
(98.6 %id)
DA911068   .a 64 to 628 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB125737 thymus .a 64 to 630 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA661418   .a 65 to 642 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA014577 adrenal gland .a 66 to 635 13 to 582   capped   570/570
(100 %)
0 diff
(100 %id)
DA907905   .a 66 to 834 2 to 772   capped   771/771
(100 %)
3 diff
(99.7 %id)
DA919137 small intestine .a 66 to 631 8 to 573   capped   566/566
(100 %)
0 diff
(100 %id)
DA961575 Spleen .a 66 to 635 13 to 582   capped   570/570
(100 %)
0 diff
(100 %id)
DB260677 uterus .a 66 to 636 10 to 580   capped   571/571
(100 %)
0 diff
(100 %id)
AF195417   .a 67 to 2149 1 to 2080 P17L A18P G19E G20E S21A ... tiling clone, AAA   2080/2080
(100 %)
4 diff
(99.9 %id)
CR614346 neuroblastoma .a 68 to 2114 1 to 2047 exact     2047/2047
(100 %)
0 diff
(100 %id)
TI_57163596   .a 68 to 861 33 to 828       796/854
(93 %)
13 diff
(98.5 %id)
TI_1948147079   .a 68 to 709 134 to 775       642/1355
(47 %)
11 diff
(99.2 %id)
TI_1948147080   .a 68 to 865 126 to 926       801/1314
(60 %)
18 diff
(98.7 %id)
TI_1948147399   .a 68 to 798 127 to 860       734/1232
(59 %)
12 diff
(99.1 %id)
TI_1948147729   .a 68 to 801 129 to 866       738/1260
(58 %)
23 diff
(98.2 %id)
TI_1948147730   .a 68 to 927 128 to 991       864/1334
(64 %)
25 diff
(98.2 %id)
TI_1948148054   .a 68 to 873 132 to 951       820/1328
(61 %)
36 diff
(97.3 %id)
TI_1948148055   .a 68 to 966 130 to 1031   AAA   902/1299
(69 %)
34 diff
(97.4 %id)
DA271871 caudate nucleus .a 69 to 640 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ721050 sympathetic trunk .a 69 to 871 1 to 804       804/919
(87 %)
9 diff
(99.1 %id)
BI836041 pooled pancreas and spleen .a 70 to 861 1 to 794       794/820
(96 %)
7 diff
(99.2 %id)
BP311422 brain .a 72 to 653 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BG388399 embryonal carcinoma, cell line, testis .a 73 to 766 1 to 691       691/691
(100 %)
3 diff
(99.6 %id)
CF272274 Brain glioblastoma .a 73 to 965 1 to 904       902/904
(99 %)
14 diff
(98.5 %id)
CF132268 Chondrosarcoma Lung Metastasis cell lines, lung .a 73 to 801 1 to 729       729/729
(100 %)
0 diff
(100 %id)
TI_57219743   .a 73 to 697 25 to 649       625/653
(95 %)
11 diff
(98.4 %id)
CV571035 cornea, eye .a 73 to 691 1 to 619       619/619
(100 %)
0 diff
(100 %id)
TI_159678127   .a 73 to 1166 51 to 1133       1083/1108
(97 %)
24 diff
(97.9 %id)
BM924402 pooled colon, kidney, stomach .a 74 to 1002 1 to 931       931/1043
(89 %)
9 diff
(99.2 %id)
DA419966 cord Blood .a 75 to 658 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BF683340 leiomyosarcoma cell line, uterus .a 75 to 725 1 to 665       663/965
(68 %)
46 diff
(95.3 %id)
BU172972 melanotic melanoma, skin .a 75 to 862 1 to 799       799/833
(95 %)
11 diff
(98.7 %id)
AU121867 mammary gland .a 75 to 807 2 to 738   capped   737/741
(99 %)
7 diff
(99.1 %id)
DA918620 small intestine .a 75 to 644 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA939798 Spleen .a 75 to 657 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
CA394362 eye, RPE/choroid .a 76 to 693 1 to 618       618/618
(100 %)
0 diff
(100 %id)
BY796313 eye .a 76 to 647 1 to 572       572/572
(100 %)
0 diff
(100 %id)
BQ217950 embryonal carcinoma, cell line, testis .a 76 to 911 1 to 843       843/865
(97 %)
12 diff
(98.7 %id)
TI_57220983   .a 76 to 871 68 to 871       804/931
(86 %)
32 diff
(96.6 %id)
TI_43960466   .a 76 to 851 69 to 847       780/1004
(77 %)
22 diff
(97.9 %id)
TI_159676666   .a 76 to 963 51 to 928       878/1020
(86 %)
22 diff
(97.9 %id)
DA423780   .a 77 to 644 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BQ057020 lymph, lymphoma, cell line .a 77 to 862 1 to 788       788/1049
(75 %)
3 diff
(99.8 %id)
BQ681315 melanotic melanoma, cell line, skin .a 77 to 995 1 to 924       924/924
(100 %)
10 diff
(99.0 %id)
BQ679668 melanotic melanoma, cell line, skin .a 77 to 920 1 to 852       849/862
(98 %)
18 diff
(98.0 %id)
BU839315 melanotic melanoma, cell line, skin .a 77 to 914 1 to 847       845/913
(92 %)
11 diff
(98.8 %id)
BQ681585 melanotic melanoma, cell line, skin .a 77 to 989 1 to 917       917/921
(99 %)
21 diff
(97.8 %id)
BQ643283 lymph, lymphoma, cell line .a 77 to 998 1 to 925       925/925
(100 %)
6 diff
(99.4 %id)
BQ437386 leiomyosarcoma, uterus .a 78 to 914 1 to 845       845/893
(94 %)
13 diff
(98.6 %id)
BQ720872 sympathetic trunk .a 78 to 863 1 to 796       796/868
(91 %)
14 diff
(98.4 %id)
TI_154170322   .a 78 to 600 80 to 602       523/524
(99 %)
3 diff
(99.5 %id)
CF132252 Chondrosarcoma Lung Metastasis cell lines, lung .a 79 to 920 1 to 841       841/841
(100 %)
2 diff
(99.8 %id)
TI_154170877   .a 79 to 771 93 to 791       699/1002
(69 %)
19 diff
(98.2 %id)
TI_154172588   .a 79 to 644 81 to 649       569/610
(93 %)
14 diff
(97.8 %id)
TI_159678106   .a 79 to 1136 51 to 1100       1050/1114
(94 %)
16 diff
(98.6 %id)
CN418177 embryonic stem cells, cell lines H1, H7, andH9 .a 80 to 645 1 to 566       566/566
(100 %)
0 diff
(100 %id)
BQ051675 blood, natural killer cells, cell line .a 80 to 1008 1 to 936       936/1082
(86 %)
21 diff
(98.1 %id)
BQ930301 epidermoid carcinoma, cell line, lung .a 80 to 953 1 to 882       879/912
(96 %)
10 diff
(99.0 %id)
BQ945097 epidermoid carcinoma, cell line, lung .a 80 to 998 1 to 924       922/964
(95 %)
30 diff
(96.9 %id)
BM454579 embryonal carcinoma, cell line, testis .a 89 to 1000 1 to 929       942/991
(95 %)
69 diff
(93.1 %id)
CR618460 B cells (Ramos cell line) Cot 25-normalized .a 93 to 2121 1 to 2029       2029/2029
(100 %)
0 diff
(100 %id)
AL537856 brain, fetal brain .a 93 to 1099 1 to 1001       1001/1047
(95 %)
23 diff
(97.9 %id)
BX358294 Placenta Cot 25-normalized .a 93 to 925 1 to 829       831/888
(93 %)
9 diff
(99.0 %id)
AL548536 placenta, Placenta Cot 25-normalized .a 93 to 1003 1 to 899       899/1034
(86 %)
14 diff
(98.7 %id)
BX343934 Placenta Cot 25-normalized .a 93 to 1109 1 to 1008       1008/1010
(99 %)
24 diff
(97.7 %id)
TI_57183505   .a 93 to 904 39 to 854       820/855
(95 %)
48 diff
(94.4 %id)
TI_57183585   .a 93 to 887 42 to 840       801/840
(95 %)
19 diff
(97.8 %id)
TI_1948147075   .a 93 to 784 163 to 856       696/1269
(54 %)
55 diff
(95.7 %id)
TI_1948147076   .a 93 to 923 148 to 984   AAA   839/1304
(64 %)
105 diff
(92.0 %id)
BU176296 eye, retinoblastoma .a 94 to 946 1 to 865       865/867
(99 %)
17 diff
(98.1 %id)
BG388611 embryonal carcinoma, cell line, testis .a 95 to 866 1 to 773       773/1115
(69 %)
28 diff
(97.5 %id)
BQ053828 blood, natural killer cells, cell line .a 97 to 987 1 to 900       900/1004
(89 %)
13 diff
(98.8 %id)
TI_154138331   .a 101 to 711 80 to 690       611/619
(98 %)
6 diff
(99.1 %id)
TI_159676271   .a 121 to 1114 52 to 1036       985/1119
(88 %)
27 diff
(97.6 %id)
CF131225 Chondrosarcoma Lung Metastasis cell lines, lung .a 162 to 825 1 to 664       664/664
(100 %)
0 diff
(100 %id)
T07514   .a 170 to 450 1 to 280       280/292
(95 %)
12 diff
(95.9 %id)
AI905092 breast .a 236 to 469 234 to 1       234/234
(100 %)
3 diff
(98.8 %id)
BP300590   .a 237 to 818 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_59391173   .a 247 to 871 104 to 733       630/1131
(55 %)
18 diff
(98.5 %id)
BX360478 Placenta Cot 25-normalized .a 342 to 1363 1 to 1018       1018/1018
(100 %)
9 diff
(99.2 %id)
DA985712 synovial membrane tissue from rheumatioidarthritis .a 410 to 977 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BQ954270 large cell carcinoma, lung .a 418 to 1198 1 to 789       789/888
(88 %)
9 diff
(99.0 %id)
BQ063674 lymph, lymphoma, cell line .a 443 to 1368 1 to 933       932/1044
(89 %)
24 diff
(97.8 %id)
BQ642257 lymph, lymphoma, cell line .a 443 to 1295 1 to 858       858/928
(92 %)
11 diff
(98.9 %id)
BQ642290 lymph, lymphoma, cell line .a 443 to 1271 1 to 832       832/916
(90 %)
16 diff
(98.3 %id)
EC462272 Prostate .a 474 to 567 94 to 1       94/94
(100 %)
0 diff
(100 %id)
EC533925 Prostate .a 474 to 567 95 to 1       95/95
(100 %)
1 diff
(99.0 %id)
EC549985 Prostate .a 474 to 567 94 to 1       94/94
(100 %)
0 diff
(100 %id)
EC578484 Prostate .a 474 to 567 94 to 1       94/94
(100 %)
0 diff
(100 %id)
AI905093 breast .a 482 to 550 69 to 1       69/69
(100 %)
1 diff
(98.6 %id)
TI_154187923   .a 495 to 1259 121 to 880       760/936
(81 %)
14 diff
(98.6 %id)
CD723008 eye, lacrimal gland .a 502 to 1124 1 to 623       623/623
(100 %)
0 diff
(100 %id)
BM708187 eye, RPE and Choroid .a 527 to 974 1 to 448       448/448
(100 %)
0 diff
(100 %id)
TI_154188143   .a 580 to 1294 122 to 836       715/910
(78 %)
9 diff
(99.1 %id)
CX785541 human embryonic stem cells .a 621 to 1470 1 to 850       850/850
(100 %)
3 diff
(99.7 %id)
BQ317561 colon .a 676 to 1281 608 to 5       604/620
(97 %)
2 diff
(99.7 %id)
BU169225 epidermoid carcinoma, cell line, salivary gland .a 731 to 1616 1 to 883       883/992
(89 %)
10 diff
(99.0 %id)
BQ673063 epidermoid carcinoma, cell line, salivary gland .a 731 to 1551 1 to 827       827/947
(87 %)
15 diff
(98.5 %id)
BU160201 melanotic melanoma, skin .a 738 to 1596 1 to 866       866/867
(99 %)
19 diff
(97.9 %id)
AK026117   .a 745 to 2149 1 to 1405   available from FLJ, AAA   1405/1405
(100 %)
3 diff
(99.8 %id)
BM461744 leiomyosarcoma, uterus .a 751 to 1563 1 to 814       814/917
(88 %)
4 diff
(99.6 %id)
BX431968 fetal liver, Liver .a 764 to 1596 1 to 831       831/831
(100 %)
6 diff
(99.3 %id)
TI_57189911   .a 774 to 1591 48 to 863       816/818
(99 %)
11 diff
(98.7 %id)
CD627632   .a 813 to 1582 768 to 1       768/768
(100 %)
7 diff
(99.1 %id)
BU501349 eye, normal pigmented retinal epithelium .a 843 to 1723 1 to 881       881/882
(99 %)
1 diff
(99.9 %id)
BE263613 lung, small cell carcinoma .a 883 to 1462 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BQ306350 breast .a 897 to 1109 212 to 1       212/212
(100 %)
2 diff
(99.1 %id)
T07513   .a 967 to 1348 384 to 1       384/384
(100 %)
3 diff
(99.3 %id)
BF337946 brain, glioblastoma with EGFR amplification .a 995 to 1751 1 to 755       755/833
(90 %)
12 diff
(98.6 %id)
TI_1948147732   .a 996 to 1936 1059 to 127       933/1374
(67 %)
22 diff
(98.4 %id)
TI_1948147401   .a 1003 to 1936 1056 to 126       929/1224
(75 %)
20 diff
(98.4 %id)
TI_1948148056   .a 1004 to 1936 1058 to 127       932/1243
(74 %)
19 diff
(98.5 %id)
TI_1948147402   .a 1010 to 1936 1049 to 125       925/1451
(63 %)
12 diff
(99.2 %id)
TI_1948148057   .a 1014 to 1936 1045 to 126       918/1477
(62 %)
17 diff
(98.9 %id)
TI_1948147078   .a 1018 to 1936 1050 to 127       924/1325
(69 %)
60 diff
(95.5 %id)
TI_1948147082   .a 1018 to 1936 1037 to 127       911/1469
(62 %)
11 diff
(99.3 %id)
BQ670983 epidermoid carcinoma, cell line, salivary gland .a 1031 to 1878 1 to 856       856/858
(99 %)
13 diff
(98.5 %id)
BU838651 epidermoid carcinoma, cell line, salivary gland .a 1031 to 1800 1 to 771       771/920
(83 %)
7 diff
(99.3 %id)
CV421059 placenta_normal .a 1032 to 1435 404 to 2     Submitted on the opposite strand 403/404
(99 %)
3 diff
(99.3 %id)
BX445187 brain, fetal brain .a 1035 to 2122 1077 to 1       1077/1088
(98 %)
23 diff
(97.9 %id)
TI_1948147731   .a 1055 to 1936 1010 to 127       884/1228
(71 %)
19 diff
(98.5 %id)
AL542268 placenta .a 1061 to 1988 975 to 63   fully sequenced, AAA   913/913
(100 %)
23 diff
(97.5 %id)
BM767448 Ascites, stomach .a 1110 to 1737 1 to 628       628/628
(100 %)
0 diff
(100 %id)
BM768139 Ascites, stomach .a 1110 to 1737 1 to 628       628/628
(100 %)
0 diff
(100 %id)
CB124113 Liver .a 1147 to 1724 1 to 578       578/578
(100 %)
0 diff
(100 %id)
AL573078 placenta, Placenta Cot 25-normalized .a 1155 to 2102 956 to 16       941/1059
(88 %)
15 diff
(98.6 %id)
AL567034 brain, fetal brain .a 1157 to 2101 964 to 29       936/964
(97 %)
14 diff
(98.6 %id)
BX343933 Placenta Cot 25-normalized .a 1157 to 2053 950 to 59       892/1066
(83 %)
8 diff
(99.3 %id)
AL566440 brain, fetal brain .a 1162 to 2127 964 to 1       964/969
(99 %)
9 diff
(99.1 %id)
BX333462 Neuroblastoma Cot 25-normalized .a 1181 to 2051 935 to 63       873/935
(93 %)
46 diff
(95.1 %id)
AL137455 amygdala .a 1213 to 2149 1 to 937   available from DKFZ, AAA   937/937
(100 %)
2 diff
(99.8 %id)
TI_1948147081   .a 1222 to 1936 849 to 126       724/1253
(57 %)
20 diff
(98.5 %id)
BM740916 stomach .a 1257 to 1860 1 to 604       604/604
(100 %)
0 diff
(100 %id)
BM742017 stomach .a 1257 to 1875 1 to 619       619/619
(100 %)
0 diff
(100 %id)
BM746029 stomach .a 1257 to 1829 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BM753057 stomach .a 1257 to 1861 1 to 605       605/605
(100 %)
0 diff
(100 %id)
BM765312 stomach .a 1257 to 1978 1 to 722       722/722
(100 %)
0 diff
(100 %id)
BM765872 stomach .a 1257 to 1952 1 to 696       696/696
(100 %)
0 diff
(100 %id)
BM772003 stomach .a 1257 to 1918 1 to 662       662/662
(100 %)
0 diff
(100 %id)
BM772478 stomach .a 1257 to 1952 1 to 696       696/696
(100 %)
0 diff
(100 %id)
BM772485 stomach .a 1257 to 1830 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BM772809 stomach .a 1257 to 1947 1 to 690       690/690
(100 %)
1 diff
(99.9 %id)
BM772833 stomach .a 1257 to 1952 1 to 695       695/695
(100 %)
1 diff
(99.9 %id)
BM773396 stomach .a 1257 to 1850 1 to 594       594/594
(100 %)
0 diff
(100 %id)
BM771564 stomach .a 1257 to 1952 1 to 696       696/696
(100 %)
0 diff
(100 %id)
BM771589 stomach .a 1257 to 1850 1 to 594       594/594
(100 %)
0 diff
(100 %id)
FN075506 breast carcinoma .a 1293 to 1369 1 to 76       76/76
(100 %)
2 diff
(97.4 %id)
TI_1948147077   .a 1295 to 1936 771 to 129       643/1235
(52 %)
24 diff
(98.1 %id)
TI_154126461   .a 1295 to 2149 904 to 65   AAA   840/940
(89 %)
22 diff
(97.7 %id)
BI008146 kidney_tumor .a 1302 to 1457 157 to 3       155/157
(98 %)
0 diff
(100 %id)
TI_154108111   .a 1303 to 2149 904 to 68   AAA   839/939
(89 %)
19 diff
(98.0 %id)
BM792203 Ascites, stomach .a 1313 to 2004 1 to 692       692/692
(100 %)
0 diff
(100 %id)
TI_45235832   .a 1362 to 2094 758 to 2       757/1125
(67 %)
32 diff
(97.2 %id)
TI_149285655   .a 1465 to 2149 768 to 86   AAA   683/687
(99 %)
3 diff
(99.6 %id)
TI_154123643   .a 1465 to 2149 820 to 138   AAA   683/897
(76 %)
41 diff
(95.5 %id)
BY993736   .a 1482 to 2086 10 to 614       605/614
(98 %)
2 diff
(99.7 %id)
BU732032 eye, RPE and Choroid .a 1512 to 2149 656 to 19   AAA   638/638
(100 %)
1 diff
(99.9 %id)
BX392305 Neuroblastoma Cot 25-normalized .a 1537 to 2143 607 to 1       607/814
(74 %)
16 diff
(98.1 %id)
FN154870 breast carcinoma .a 1600 to 1695 100 to 2     Submitted on the opposite strand 99/100
(99 %)
0 diff
(100 %id)
TI_149305217   .a 1607 to 2149 632 to 90   AAA   543/949
(57 %)
1 diff
(99.9 %id)
GW493637 stomach .a 1630 to 1983 1 to 344       344/388
(88 %)
21 diff
(94.6 %id)
DB575756 hypothalamus .a 1657 to 2149 1 to 493     Submitted on the opposite strand 493/493
(100 %)
1 diff
(99.8 %id)
DB546927 hippocampus .a 1687 to 2149 1 to 463     Submitted on the opposite strand 463/463
(100 %)
1 diff
(99.8 %id)
DB361092 mammary gland .a 1689 to 2149 463 to 1       463/517
(89 %)
12 diff
(97.7 %id)
DB384254   .a 1689 to 2149 462 to 1       462/564
(81 %)
18 diff
(96.9 %id)
DA706561   .b 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
DA664954   .b 12 to 583 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA087313 cerebellum .b 13 to 568 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA591335 lung .b 13 to 585 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA693980   .b 13 to 579 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DB166056 thyroid gland .b 13 to 678 2 to 667   capped   666/666
(100 %)
0 diff
(100 %id)
DB248935 uterus .b 13 to 572 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AI752702 Bone, Hip .b 17 to 518 9 to 511       503/511
(98 %)
9 diff
(98.3 %id)
DA600250   .b 19 to 583 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BM787099 stomach .b 25 to 219 1 to 196       196/196
(100 %)
6 diff
(97.0 %id)
TI_45212758   .b 29 to 779 83 to 868       785/872
(90 %)
56 diff
(93.6 %id)
BG708937 brain, hypothalamus .b 30 to 790 1 to 753       755/753
(100 %)
20 diff
(97.4 %id)
BI603467 brain, hypothalamus .b 30 to 779 1 to 785   available from MGC,   740/789
(93 %)
70 diff
(91.2 %id)
DA169505 amygdala .b 32 to 608 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA382597 thalamus .b 32 to 676 2 to 647   capped   646/646
(100 %)
1 diff
(99.9 %id)
DB491954 hypothalamus .b 35 to 411 1 to 378       378/378
(100 %)
3 diff
(99.3 %id)
DB494164 hypothalamus .b 35 to 529 1 to 495       495/495
(100 %)
2 diff
(99.6 %id)
DB500958 hypothalamus .b 35 to 513 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
DB504516 hypothalamus .b 35 to 524 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
BC067902 Brain, hypothalamus .b 35 to 2170 1 to 2134 K178R E179A Q180D M181G E182D ... tiling clone, available from MGC, AAA   2134/2134
(100 %)
6 diff
(99.8 %id)
DA175419 amygdala .b 36 to 602 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA310342 hippocampus .b 36 to 604 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA599056   .b 36 to 605 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BG700602 brain, hippocampus .b 36 to 654 1 to 624       624/656
(95 %)
18 diff
(97.3 %id)
DA718146   .b 36 to 580 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BQ072236 brain, neuroblastoma, cell line .b 37 to 873 48 to 903       856/1106
(77 %)
34 diff
(97.0 %id)
DA475722   .b 39 to 590 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA080624 cerebellum .b 40 to 606 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA397166 thalamus .b 40 to 621 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA773244 brain .b 43 to 579 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB478282 hippocampus .b 46 to 548 1 to 503       503/503
(100 %)
3 diff
(99.5 %id)
BI258891 cervical carcinoma cell line, cervix .b 49 to 891 1 to 848       848/866
(97 %)
22 diff
(97.5 %id)
BX447495 placenta .b 53 to 924 1 to 872       874/872
(100 %)
27 diff
(97.0 %id)
AL558240 T cells from T cell leukemia .b 53 to 988 1 to 936       934/941
(99 %)
10 diff
(99.0 %id)
BM694549 eye, RPE and Choroid .b 53 to 628 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
DA378523 thalamus .b 57 to 631 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA949867 Spleen .b 57 to 605 2 to 563   capped   557/562
(99 %)
16 diff
(97.2 %id)
DA180663 amygdala .b 63 to 628 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA423555   .b 68 to 629 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BG715000 brain, hypothalamus .b 75 to 544 1 to 470       470/500
(94 %)
5 diff
(99.0 %id)
DA201504 brain .b 76 to 670 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
BX333463 Neuroblastoma Cot 25-normalized .b 82 to 1000 1 to 915   tiling clone,   657/922
(71 %)
53 diff
(94.3 %id)
BE883473 leiomyosarcoma, uterus .b 95 to 793 1 to 690       692/692
(100 %)
24 diff
(96.6 %id)
AL558239 T cells from T cell leukemia .b 1219 to 2093 901 to 41   tiling clone,   861/939
(91 %)
21 diff
(97.8 %id)
BU731155 eye, RPE and Choroid .b 1588 to 2172 601 to 17   AAA   585/585
(100 %)
1 diff
(99.9 %id)
AU159007 thyroid gland .b 1709 to 2170 461 to 1       461/480
(96 %)
4 diff
(99.2 %id)
AA626552 lung, lung carcinoma .b 1823 to 2171 349 to 2     Submitted on the opposite strand 348/349
(99 %)
0 diff
(100 %id)
EC482360 Prostate .b 1832 to 1914 85 to 4       82/96
(85 %)
0 diff
(100 %id)
EC496066 Prostate .b 1832 to 1916 83 to 2       82/94
(87 %)
0 diff
(100 %id)
EC526406 Prostate .b 1832 to 1916 85 to 1       85/96
(88 %)
0 diff
(100 %id)
EC517457 Prostate .b 1864 to 1956 92 to 1       92/92
(100 %)
2 diff
(97.9 %id)
GD159104   .b 1945 to 2170 1 to 225   AAA   225/225
(100 %)
4 diff
(98.3 %id)
GD160285   .b 1945 to 2170 1 to 225   AAA   225/225
(100 %)
6 diff
(97.4 %id)
GD136631   .b 1949 to 2170 4 to 225   AAA   222/225
(98 %)
6 diff
(97.4 %id)
ES314650 occipital scalp hair, skin .b 1995 to 2152 157 to 1     Submitted on the opposite strand 157/157
(100 %)
2 diff
(98.8 %id)
BQ424338 melanotic melanoma, skin .c 1 to 807 820 to 1   tiling clone, Submitted on the opposite strand 820/923
(88 %)
24 diff
(97.4 %id)
DB163905 thymus .c 51 to 647 2 to 598   tiling clone, capped   597/597
(100 %)
0 diff
(100 %id)
CK905092 insulinoma, Pancreas .c 66 to 418 9 to 361   fully sequenced, Submitted on the opposite strand 353/361
(97 %)
5 diff
(98.7 %id)
BQ478195 insulinoma, Pancreas .c 66 to 328 9 to 271   fully sequenced, Submitted on the opposite strand 263/271
(97 %)
5 diff
(98.2 %id)
BQ478262 insulinoma, Pancreas .c 66 to 381 8 to 323   fully sequenced, Submitted on the opposite strand 316/323
(97 %)
5 diff
(98.5 %id)
BU782949 insulinoma, Pancreas .c 66 to 392 9 to 335   fully sequenced, Submitted on the opposite strand 327/335
(97 %)
5 diff
(98.6 %id)
BM272673 insulinoma, Pancreas .c 72 to 549 15 to 492     Submitted on the opposite strand 478/492
(97 %)
6 diff
(98.8 %id)
BQ272442 insulinoma, Pancreas .c 72 to 549 15 to 492     Submitted on the opposite strand 478/492
(97 %)
6 diff
(98.8 %id)
CA307819 Alveolar Macrophage, lung .c 72 to 840 17 to 781   AAA Submitted on the opposite strand 765/781
(97 %)
6 diff
(99.3 %id)
BI837100 pooled pancreas and spleen .c 83 to 806 726 to 1     Submitted on the opposite strand 726/774
(93 %)
9 diff
(98.9 %id)
TI_57167953   .c 83 to 808 761 to 34     Submitted on the opposite strand 728/1023
(71 %)
0 diff
(100 %id)
CN280290 embryonic stem cells, DMSO-treated H9 cellline .c 158 to 807 650 to 1     Submitted on the opposite strand 650/650
(100 %)
0 diff
(100 %id)
CN280291 embryonic stem cells, DMSO-treated H9 cellline .c 170 to 795 626 to 1     Submitted on the opposite strand 626/626
(100 %)
0 diff
(100 %id)
BE263091 brain, neuroblastoma .c 202 to 777 577 to 1     Submitted on the opposite strand 577/577
(100 %)
1 diff
(99.9 %id)
BQ478442 insulinoma, Pancreas .c 298 to 794 505 to 9   fully sequenced, Submitted on the opposite strand 497/505
(98 %)
7 diff
(98.7 %id)
BE312516 brain, neuroblastoma .c 299 to 777 479 to 1     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
BQ478511 insulinoma, Pancreas .c 351 to 794 452 to 9   fully sequenced, Submitted on the opposite strand 444/452
(98 %)
5 diff
(98.9 %id)
BM272914 insulinoma, Pancreas .c 361 to 788 442 to 15     Submitted on the opposite strand 428/442
(96 %)
0 diff
(100 %id)
BU782062 insulinoma, Pancreas .c 362 to 794 441 to 9   fully sequenced, Submitted on the opposite strand 433/441
(98 %)
5 diff
(98.9 %id)
CK905093 insulinoma, Pancreas .c 388 to 794 415 to 9   fully sequenced, Submitted on the opposite strand 407/415
(98 %)
5 diff
(98.8 %id)
CN280292 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 567 to 1243 6 to 682   tiling clone,   677/682
(99 %)
7 diff
(99.0 %id)
AK091774 lung .c 940 to 3314 1 to 2375   tiling clone, available from FLJ,   2375/2375
(100 %)
1 diff
(100.0 %id)
DA380483 thalamus .c 941 to 1465 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA583133 lung .c 941 to 1530 2 to 592   capped   591/592
(99 %)
2 diff
(99.7 %id)
DB105721 thymus .c 941 to 1472 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DB147487 thymus .c 945 to 1224 2 to 281   capped   280/280
(100 %)
0 diff
(100 %id)
DA928163 small intestine .c 949 to 1521 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA016732 adrenal gland .c 950 to 1495 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
DA193277 amygdala .c 951 to 1530 2 to 585   capped   584/591
(98 %)
7 diff
(98.9 %id)
DB070453 testis .c 954 to 1481 8 to 536   capped   529/529
(100 %)
2 diff
(99.7 %id)
DA789612 brain .c 957 to 1530 2 to 577   capped   576/582
(98 %)
6 diff
(99.0 %id)
DB280022 uterus .c 963 to 1420 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
BX641072 human rectum tumor .c 1168 to 3315 1 to 2147 G339A D341T Q342R E343R E344N ... tiling clone, available from DKFZ,   2147/2155
(99 %)
10 diff
(99.6 %id)
DA404298 thalamus .c 1170 to 1661 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
DA681524 ovary .c 1184 to 1752 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
DA424332   .c 1203 to 1765 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA424371   .c 1203 to 1765 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA662599   .c 1203 to 1723 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DB244727 uterus, tumor tissue .c 1203 to 1765 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BP207162 coronary artery .c 1205 to 1786 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP254702 Kidney .c 1205 to 1780 1 to 576       576/582
(98 %)
7 diff
(98.8 %id)
BM822092 stomach .c 1211 to 1741 1 to 531       531/531
(100 %)
3 diff
(99.5 %id)
BF343633 brain, glioblastoma with EGFR amplification .c 1339 to 2030 13 to 705       693/754
(91 %)
11 diff
(98.6 %id)
BQ420424 embryonal carcinoma, cell line, testis .c 2527 to 3314 2 to 789       788/790
(99 %)
8 diff
(99.0 %id)
TI_227714349   .c 2537 to 3314 895 to 124   AAA   772/920
(83 %)
21 diff
(97.8 %id)
TI_154129724   .c 2539 to 3314 861 to 91   AAA   771/943
(81 %)
9 diff
(99.1 %id)
TI_154111223   .c 2540 to 3314 843 to 69   AAA   775/816
(94 %)
15 diff
(98.2 %id)
TI_149311015   .c 2543 to 3314 857 to 88   AAA   770/885
(87 %)
13 diff
(98.6 %id)
TI_43960468   .c 2590 to 3237 668 to 8   tiling clone,   661/668
(98 %)
14 diff
(98.0 %id)
DB319284 lung .c 2760 to 3314 556 to 1       556/556
(100 %)
2 diff
(99.7 %id)
DB572140 hypothalamus .c 2853 to 3314 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
AA533914 normal prostatic epithelial cells, Prostate .c 2853 to 3315 464 to 1       464/565
(82 %)
8 diff
(98.6 %id)
BF361061 ovary .c 2864 to 3292 441 to 13       429/445
(96 %)
0 diff
(100 %id)
DB565200 hypothalamus .c 2866 to 3314 1 to 449     Submitted on the opposite strand 449/449
(100 %)
1 diff
(99.8 %id)
DB562794 hypothalamus .c 2897 to 3314 1 to 418     Submitted on the opposite strand 418/418
(100 %)
1 diff
(99.8 %id)
DB559677 hypothalamus .c 2911 to 3312 1 to 402     Submitted on the opposite strand 402/404
(99 %)
20 diff
(95.1 %id)
AI752703 Bone, Hip .c 2926 to 3315 403 to 14       390/403
(96 %)
0 diff
(100 %id)
DA146416 amygdala .d 1 to 578 6 to 584   tiling clone, capped   583/583
(100 %)
2 diff
(99.7 %id)
DA832125 placenta .d 4 to 675 2 to 675   tiling clone, capped   674/678
(99 %)
5 diff
(99.3 %id)
DA087206 cerebellum .d 5 to 578 2 to 577   capped   576/576
(100 %)
6 diff
(99.0 %id)
DA154814 amygdala .d 7 to 590 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
BI754612 brain .d 919 to 1751 1 to 842   tiling clone,   842/1122
(75 %)
19 diff
(98.4 %id)
TI_57217243   .d 919 to 1751 34 to 875       842/1155
(72 %)
23 diff
(98.1 %id)
CA487331   .d 987 to 1848 1 to 865       865/942
(91 %)
13 diff
(98.7 %id)
CR614266 fetal brain .d 1041 to 2604 1 to 1564 exact tiling clone,   1564/1564
(100 %)
0 diff
(100 %id)
AL536681 brain, fetal brain .d 1041 to 1942 1 to 900       900/900
(100 %)
6 diff
(99.4 %id)
BX445188 brain, fetal brain .d 1041 to 2039 1 to 989       989/1032
(95 %)
13 diff
(98.8 %id)
DB378140 placenta .d 2165 to 2617 460 to 10   tiling clone,   451/523
(86 %)
4 diff
(99.3 %id)
CR982970 T-Lymphocytes .e 1 to 728 1 to 728   tiling clone,   728/728
(100 %)
0 diff
(100 %id)
CR983053 T-Lymphocytes .e 3 to 876 1 to 878       878/879
(99 %)
7 diff
(99.3 %id)
BJ994598 hepatoblastoma .e 14 to 613 1 to 600       600/600
(100 %)
0 diff
(100 %id)
DA087045 cerebellum .e 15 to 584 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA096937 cerebellum .e 15 to 585 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA205230 brain .e 15 to 579 2 to 571   capped   567/570
(99 %)
6 diff
(99.0 %id)
DA285572 corpus callosum .e 15 to 506 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
DA372476 thalamus .e 15 to 626 2 to 613   capped   612/612
(100 %)
0 diff
(100 %id)
DA399993 thalamus .e 15 to 592 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA738778   .e 15 to 561 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BX498275 Liver .e 21 to 497 1 to 477       477/477
(100 %)
4 diff
(99.2 %id)
AK092585 Prostate .e 24 to 2973 1 to 2950 exact tiling clone, available from FLJ,   2950/2950
(100 %)
4 diff
(99.9 %id)
AX747613   .e 24 to 2973 1 to 2950 exact     2950/2950
(100 %)
4 diff
(99.9 %id)
DA393680 thalamus .e 24 to 602 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB026393 testis .e 24 to 584 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BP201195 amygdala .e 25 to 607 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
DA204143 brain .e 25 to 602 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA804479 brain .e 25 to 578 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA869395 Prostate .e 25 to 576 2 to 569   capped   568/568
(100 %)
22 diff
(96.2 %id)
DA809471 brain .e 26 to 616 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA929440 small intestine .e 26 to 591 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA500971 brain .e 37 to 585 2 to 556   capped   555/555
(100 %)
7 diff
(98.8 %id)
DA937672 Spleen .e 37 to 639 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
DA075795 cerebellum .e 235 to 811 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
AW834810 leiomios .e 337 to 592 273 to 18       256/273
(93 %)
0 diff
(100 %id)
BX486033   .e 740 to 1186 1 to 446       446/446
(100 %)
3 diff
(99.4 %id)
BQ082365 Ascites, stomach .e 749 to 1260 1 to 515       515/515
(100 %)
2 diff
(99.7 %id)
BF921298 nervous_tumor .e 1098 to 1273 177 to 6     Submitted on the opposite strand 172/197
(87 %)
0 diff
(100 %id)
DB329823 Prostate .e 2381 to 2973 595 to 1       595/595
(100 %)
4 diff
(99.4 %id)
DB113335 thymus .f 1 to 580 6 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
BQ723518 sympathetic trunk .f 22 to 944 1 to 926   tiling clone,   926/928
(99 %)
34 diff
(96.4 %id)
BG257794 embryonal carcinoma, cell line, testis .f 665 to 1440 1 to 770   tiling clone,   770/772
(99 %)
14 diff
(98.2 %id)
BI008863 kidney_tumor .f 1230 to 1612 390 to 2   tiling clone,   389/400
(97 %)
17 diff
(95.8 %id)
BM835743 stomach .g 1 to 573 6 to 578   tiling clone,   578/578
(100 %)
0 diff
(100 %id)
DA304518 hippocampus .g 1 to 564 6 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DB039560 testis .g 5 to 586 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA272714 caudate nucleus .g 7 to 536 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB111271 thymus .g 7 to 584 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB128436 thymus .g 7 to 583 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
CN362353 embryonic stem cells, cell lines H1, H7, andH9 .g 340 to 959 1 to 620   tiling clone,   620/620
(100 %)
2 diff
(99.7 %id)
DB101761 thymus .g 859 to 1409 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
BF965911 Bone, osteosarcoma, cell line .g 1151 to 1776 1 to 626 V182A W191G L192W A193P C194A ... tiling clone,   626/877
(71 %)
6 diff
(99.4 %id)
BF965993 Bone, osteosarcoma, cell line .g 1152 to 1799 1 to 645 K141Q K142E A143G D144R V145R ... tiling clone,   645/645
(100 %)
8 diff
(98.8 %id)
DA942349 Spleen .h 1 to 597 2 to 598   tiling clone, capped   597/597
(100 %)
0 diff
(100 %id)
BP200555 amygdala .h 156 to 708 45 to 597   tiling clone,   553/597
(92 %)
8 diff
(98.7 %id)
BG818169 anaplastic oligodendroglioma with 1p/19qloss, brain .i 1 to 819 1 to 838 C24* tiling clone,   838/933
(89 %)
35 diff
(96.3 %id)
TI_57180089   .i 35 to 756 63 to 784   tiling clone,   722/784
(92 %)
6 diff
(99.3 %id)
BI770231 pooled lung and spleen .i 36 to 756 1 to 721       721/721
(100 %)
0 diff
(100 %id)
DA926425 small intestine .j 1 to 569 16 to 584 T137M tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
DA901379   .k 1 to 505 6 to 510   tiling clone, capped   509/509
(100 %)
0 diff
(100 %id)
DB126145 thymus .k 7 to 566 2 to 562 L46P L47A Q48P K49E L50A ... tiling clone, capped   561/562
(99 %)
2 diff
(99.7 %id)
BU617463 Bone, Subchondral Bone .l 1 to 686 703 to 18 G91E tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 686/703
(97 %)
1 diff
(99.9 %id)
BG876845 head_neck .m 1 to 612 612 to 9   tiling clone,   604/652
(92 %)
13 diff
(98.1 %id)
AW383486 head_neck .m 78 to 535 523 to 66   tiling clone,   458/523
(87 %)
11 diff
(97.9 %id)
DA089023 cerebellum .m 406 to 987 2 to 583   tiling clone, capped   582/582
(100 %)
3 diff
(99.5 %id)
DB122045 thymus .n 1 to 541 13 to 554   tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
DA769071 brain .n 7 to 522 2 to 517   capped   516/517
(99 %)
1 diff
(99.9 %id)
DB140500 thymus .n 13 to 529 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA775530 brain .n 15 to 581 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA094938 cerebellum .n 35 to 588 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA654566   .n 36 to 546 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
AK310525 testis .n 50 to 1233 1 to 1184   tiling clone,   1184/1184
(100 %)
1 diff
(100.0 %id)
DB098372 testis .n 51 to 618 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB152279 thymus .n 51 to 633 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AI804284 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1183 to 1557 1 to 375 exact tiling clone, Submitted on the opposite strand 375/375
(100 %)
0 diff
(100 %id)
DA877710 Prostate .o 1 to 519 10 to 528   capped   527/527
(100 %)
3 diff
(99.5 %id)
DB229186 trachea .o 1 to 547 8 to 559   capped   558/558
(100 %)
5 diff
(99.2 %id)
DB268552 uterus .o 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DA810063 brain .o 19 to 580 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BI669521 brain, hypothalamus .o 28 to 705 1 to 678       678/678
(100 %)
7 diff
(99.0 %id)
DB489944 hypothalamus .o 33 to 483 1 to 452       452/452
(100 %)
13 diff
(97.2 %id)
DA944363 Spleen .o 34 to 570 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
TI_44345059   .o 35 to 705 126 to 796       671/796
(84 %)
6 diff
(99.3 %id)
DB081471 testis .o 35 to 598 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA889414   .o 323 to 876 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA259633 caudate nucleus .o 330 to 897 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
DA530016 brain .p 1 to 603 9 to 612   tiling clone, capped   611/611
(100 %)
3 diff
(99.6 %id)
DA235914 brain .p 1 to 577 7 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
TI_59394381   .p 6 to 813 85 to 892   tiling clone,   808/808
(100 %)
6 diff
(99.3 %id)
BM016003 breast, mammary adenocarcinoma, cell line .p 8 to 813 1 to 806   tiling clone,   806/806
(100 %)
6 diff
(99.3 %id)
DA505128 brain .q 1 to 552 8 to 561   tiling clone, capped   560/560
(100 %)
2 diff
(99.7 %id)
DA776510 brain .q 23 to 594 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BI911946 leukocyte .q 124 to 775 31 to 684 G45A S46L D48I C50V Y51T ... tiling clone,   654/686
(95 %)
17 diff
(97.6 %id)
TI_57233977   .q 124 to 775 31 to 684 G45A S46L D48I C50V Y51T ...     654/686
(95 %)
17 diff
(97.6 %id)
AW608322 leiomios .q 250 to 810 1 to 562 P49H tiling clone,   560/562
(99 %)
20 diff
(96.5 %id)
DB087620 testis .r 1 to 539 10 to 548 exact tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
DB087643 testis .r 1 to 562 10 to 573 C8V M10Y C11V R12P Y13L ... capped   570/572
(99 %)
4 diff
(99.4 %id)
DA106365 cerebellum .r 159 to 687 2 to 530   tiling clone, capped   529/529
(100 %)
0 diff
(100 %id)
BP212136 cerebrum .s 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
DA349984 substantia nigra .s 21 to 574 2 to 556   tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DA372414 thalamus .t 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DB178373 kidney, tumor tissue .u 1 to 554 4 to 558   tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DA374395 thalamus .va 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
0 diff
(100 %id)
DA618407   .va 14 to 510 2 to 498 exact capped   497/497
(100 %)
0 diff
(100 %id)
AA354129   Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
AK091545 brain Gene DDX41, variant not shown       available from FLJ, This clone was ignored    
AX747049   Gene DDX41, variant not shown         This clone was ignored    
DA307659 hippocampus Gene DDX41, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA365284 subthalamic nucleus Gene DDX41, variant not shown       capped This clone was ignored    
CN418175 embryonic stem cells, DMSO-treated H9 cellline Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
DB316165 brain Gene DDX41, variant not shown         This clone was ignored    
DA507592 brain Gene DDX41, variant not shown       capped This clone was ignored    
DA528480 brain Gene DDX41, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA562180 heart Gene DDX41, variant not shown       capped Suspected internal deletion, this clone was ignored    
BJ994739 hepatoblastoma Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
AI126200   Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
AW006679 colon Gene DDX41, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
BF311062 brain, neuroblastoma Gene DDX41, variant not shown         Submitted on the opposite strand    
BG749468 eye, normal pigmented retinal epithelium Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
BI552185 brain, hippocampus Gene DDX41, variant not shown       AAA Suspected internal deletion, this clone was ignored    
TI_44171898   Gene DDX41, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DA777291 brain Gene DDX41, variant not shown       capped Suspected internal deletion, this clone was ignored    
TI_1948147400   Gene DDX41, variant not shown         Suspected internal deletion, this clone was ignored    
DB107396 thymus Gene DDX41, variant not shown       capped Suspected internal deletion, this clone was ignored    
TI_149315255   Gene DDX41, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
TI_154127055   Gene DDX41, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BQ045168 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene DDX41, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI