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Gene DDX4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
164 supporting clones for gene DDX4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_024415.2   .a 1 to 2880 1 to 2880 exact RefSeq,   2880/2880
(100 %)
0 diff
(100 %id)
BC030638 testis .a 8 to 2511 6 to 2508 G424E R425D L426* tiling clone, available from MGC, AAA   2503/2503
(100 %)
3 diff
(99.9 %id)
BG719449 testis .a 8 to 750 6 to 747   available from MGC,   742/747
(99 %)
9 diff
(98.8 %id)
BI459115 testis .a 19 to 677 1 to 660       660/841
(78 %)
12 diff
(98.6 %id)
BI463502 testis .a 19 to 757 1 to 741       741/743
(99 %)
14 diff
(98.2 %id)
BG771822 testis .a 23 to 722 1 to 698       698/699
(99 %)
6 diff
(99.2 %id)
DB045235 testis .a 25 to 595 2 to 572   capped   571/572
(99 %)
2 diff
(99.7 %id)
DB054467 testis .a 25 to 584 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
AK292417 testis .a 26 to 2668 1 to 2643 exact tiling clone,   2643/2643
(100 %)
0 diff
(100 %id)
DB025807 testis .a 27 to 635 2 to 610   capped   609/609
(100 %)
0 diff
(100 %id)
DB029188 testis .a 27 to 612 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DB037496 testis .a 27 to 598 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB063779 testis .a 27 to 563 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB075355 testis .a 27 to 586 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB082336 testis .a 27 to 598 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BG718634 testis .a 29 to 862 1 to 843       841/846
(99 %)
29 diff
(96.6 %id)
BI462207 testis .a 29 to 850 1 to 830       828/830
(99 %)
25 diff
(97.0 %id)
BI560849 testis .a 29 to 721 1 to 693       693/693
(100 %)
3 diff
(99.6 %id)
DB462246 testis .a 30 to 502 1 to 473       473/473
(100 %)
0 diff
(100 %id)
TI_44349085   .a 34 to 721 130 to 817       688/817
(84 %)
6 diff
(99.3 %id)
BI464267 testis .a 37 to 773 1 to 739       737/822
(89 %)
16 diff
(98.1 %id)
DB456693 testis .a 38 to 521 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BG717354 testis .a 38 to 688 1 to 651       651/651
(100 %)
6 diff
(99.1 %id)
DB048798 testis .a 39 to 608 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB052819 testis .a 39 to 608 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB094532 testis .a 39 to 597 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BG718234 testis .a 40 to 721 1 to 682       682/682
(100 %)
3 diff
(99.6 %id)
BI463447 testis .a 40 to 678 1 to 647       647/917
(70 %)
19 diff
(98.0 %id)
BI560499 testis .a 40 to 731 1 to 699       699/884
(79 %)
16 diff
(98.2 %id)
BQ429126 testis .a 40 to 725 1 to 687       687/792
(86 %)
11 diff
(98.7 %id)
BC088362 testis .a 42 to 2511 1 to 2470 exact AAA   2470/2470
(100 %)
0 diff
(100 %id)
TI_44349474   .a 42 to 731 90 to 786       697/971
(71 %)
18 diff
(98.2 %id)
DB443461 testis .a 43 to 500 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
CD358073 testis .a 43 to 730 1 to 689       689/868
(79 %)
7 diff
(99.2 %id)
DB023346 testis .a 46 to 590 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DB038452 testis .a 46 to 516 2 to 472   capped   471/471
(100 %)
1 diff
(99.8 %id)
DB039288 testis .a 46 to 615 2 to 572   capped   571/572
(99 %)
6 diff
(99.0 %id)
DB057918 testis .a 46 to 538 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DB454629 testis .a 47 to 525 1 to 479       479/479
(100 %)
0 diff
(100 %id)
DB041964 testis .a 48 to 613 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BG717812 testis .a 50 to 705 1 to 657       657/657
(100 %)
4 diff
(99.4 %id)
BI461393 testis .a 52 to 732 1 to 683       683/861
(79 %)
11 diff
(98.8 %id)
BG717110 testis .a 54 to 821 6 to 773       768/798
(96 %)
13 diff
(98.4 %id)
DB031232 testis .a 55 to 648 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DB028274 testis .a 56 to 595 2 to 541   capped   540/541
(99 %)
2 diff
(99.7 %id)
DB035847 testis .a 56 to 627 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB043562 testis .a 56 to 631 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB058588 testis .a 56 to 598 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB060185 testis .a 56 to 595 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB077009 testis .a 56 to 597 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB457658 testis .a 57 to 519 1 to 463       463/463
(100 %)
0 diff
(100 %id)
BG718861 testis .a 59 to 730 1 to 676       676/700
(96 %)
20 diff
(97.2 %id)
DB443337 testis .a 65 to 529 1 to 462       462/462
(100 %)
8 diff
(98.3 %id)
DB443909 testis .a 65 to 512 1 to 449       449/449
(100 %)
3 diff
(99.4 %id)
DB445945 testis .a 66 to 528 1 to 463       463/463
(100 %)
0 diff
(100 %id)
DB019872 testis .a 66 to 595 2 to 531   capped   530/531
(99 %)
1 diff
(99.9 %id)
DB030263 testis .a 66 to 660 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DB040779 testis .a 66 to 631 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DB456116 testis .a 68 to 630 1 to 491       485/491
(98 %)
1 diff
(99.8 %id)
DB025159 testis .a 69 to 627 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB054617 testis .a 69 to 651 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB057079 testis .a 69 to 585 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DB084964 testis .a 69 to 625 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AL042306 testis .a 83 to 564 1 to 481       481/482
(99 %)
8 diff
(98.4 %id)
AY004154 testis .a 87 to 2310 1 to 2224 I556T Q713R     2224/2224
(100 %)
6 diff
(99.8 %id)
CD251828 testis .a 89 to 925 1 to 845       845/850
(99 %)
26 diff
(97.0 %id)
AL137462 testis .a 365 to 2511 1 to 2147   available from DKFZ, AAA   2147/2147
(100 %)
0 diff
(100 %id)
NM_001166533.1   .b 1 to 2451 1 to 2451 exact RefSeq, AAA   2451/2451
(100 %)
0 diff
(100 %id)
AK308300 testis .b 24 to 1910 1 to 1886   tiling clone,   1886/1886
(100 %)
5 diff
(99.8 %id)
DC400962 testis .b 24 to 546 1 to 523       523/523
(100 %)
0 diff
(100 %id)
DB445878 testis .b 65 to 523 1 to 459       459/459
(100 %)
4 diff
(99.2 %id)
DC395299 testis .b 67 to 627 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
DB062657 testis .c 1 to 533 2 to 534   tiling clone, capped   533/533
(100 %)
1 diff
(99.9 %id)
DB457419 testis .c 21 to 487 1 to 467       467/467
(100 %)
0 diff
(100 %id)
NM_001142549.1   .c 21 to 2798 1 to 2778 exact RefSeq,   2778/2778
(100 %)
0 diff
(100 %id)
DB442599.
matches multiple genes
testis .c 40 to 491 1 to 451     also hits gene nusmybu 453/451
(100 %)
6 diff
(98.7 %id)
DB446665 testis .c 54 to 477 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
DB449138 testis .c 54 to 474 1 to 421       421/421
(100 %)
0 diff
(100 %id)
DB449737 testis .c 54 to 497 1 to 444       444/444
(100 %)
4 diff
(99.1 %id)
DB062333 testis .c 55 to 580 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DB031084 testis .c 56 to 628 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BI463846 testis .c 60 to 865 1 to 805       805/810
(99 %)
23 diff
(97.2 %id)
DB450142 testis .c 65 to 518 1 to 454       454/454
(100 %)
1 diff
(99.8 %id)
DB469364 hippocampus .c 65 to 488 1 to 424       424/424
(100 %)
0 diff
(100 %id)
DB459702 testis .c 67 to 515 1 to 449       449/449
(100 %)
0 diff
(100 %id)
TI_44351040   .c 76 to 882 111 to 924       814/961
(84 %)
23 diff
(97.7 %id)
DB460813 testis .c 77 to 467 1 to 391       391/391
(100 %)
0 diff
(100 %id)
BI562624 testis .c 79 to 882 1 to 810       810/847
(95 %)
22 diff
(97.5 %id)
BC047455 testis .c 83 to 2429 1 to 2347 Q346K tiling clone, available from MGC, AAA   2347/2347
(100 %)
4 diff
(99.9 %id)
DB450077 testis .c 85 to 366 1 to 283       283/283
(100 %)
5 diff
(98.3 %id)
DB029383 testis .c 86 to 670 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DB025260 testis .c 88 to 652 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
CD300339 testis .c 104 to 853 35 to 786       752/939
(80 %)
10 diff
(99.0 %id)
TI_1948157491   .c 112 to 1190 129 to 1202       1074/1371
(78 %)
45 diff
(96.8 %id)
EL733979 mixed .c 120 to 756 1 to 637       637/637
(100 %)
1 diff
(99.9 %id)
DB034185 testis .c 523 to 1093 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
CD359812 testis .c 710 to 1387 1 to 686       686/981
(69 %)
16 diff
(98.4 %id)
CD557531 testis .c 923 to 1750 1 to 829   tiling clone,   829/896
(92 %)
20 diff
(97.8 %id)
DB052471 testis .c 943 to 1514 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
CD557866 testis .c 990 to 1862 25 to 906       882/933
(94 %)
39 diff
(95.9 %id)
CD557137 testis .c 1089 to 1911 30 to 875       846/914
(92 %)
48 diff
(94.8 %id)
AA383535 testis .c 1210 to 1544 1 to 335       335/335
(100 %)
0 diff
(100 %id)
CD557160 testis .c 1233 to 2049 1 to 827   tiling clone,   827/885
(93 %)
14 diff
(98.5 %id)
TI_1948207492   .c 1379 to 2191 948 to 125       824/1254
(65 %)
13 diff
(99.0 %id)
DB527684 testis .c 1829 to 2289 1 to 461     Submitted on the opposite strand 461/461
(100 %)
1 diff
(99.8 %id)
AA401568   .c 1871 to 1948 1 to 79       79/79
(100 %)
2 diff
(97.5 %id)
BX282689   .c 1878 to 2374 1 to 497       497/497
(100 %)
0 diff
(100 %id)
AA398976   .c 1878 to 2145 1 to 267   fully sequenced,   267/267
(100 %)
1 diff
(99.7 %id)
AI217144   .c 1899 to 2429 555 to 25   AAA   531/531
(100 %)
1 diff
(99.9 %id)
DB522118 testis .c 1946 to 2429 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
AI969018 pooled germ cell tumors .c 1951 to 2058 108 to 1       108/108
(100 %)
0 diff
(100 %id)
AI953070 pooled germ cell tumors .c 1953 to 2289 347 to 11   AAA   337/337
(100 %)
0 diff
(100 %id)
DB520633 testis .c 1961 to 2429 1 to 470     Submitted on the opposite strand 470/470
(100 %)
1 diff
(99.8 %id)
AI025074   .c 1962 to 2429 469 to 5       465/469
(99 %)
6 diff
(98.8 %id)
DB520042 testis .c 1975 to 2429 1 to 455     Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
DB515760 testis .c 1977 to 2429 1 to 455     Submitted on the opposite strand 455/455
(100 %)
5 diff
(99.0 %id)
DB515008 testis .c 1994 to 2429 1 to 436     Submitted on the opposite strand 436/436
(100 %)
2 diff
(99.6 %id)
AW449170   .c 1995 to 2326 345 to 1       354/360
(98 %)
62 diff
(82.8 %id)
DB525141 testis .c 1999 to 2427 1 to 429     Submitted on the opposite strand 429/431
(99 %)
1 diff
(99.8 %id)
DB526214 testis .c 2023 to 2429 1 to 407   AAA Submitted on the opposite strand 407/407
(100 %)
0 diff
(100 %id)
AI337133 pooled germ cell tumors .c 2023 to 2322 300 to 1       300/300
(100 %)
0 diff
(100 %id)
AI654417 pooled germ cell tumors .c 2023 to 2322 300 to 1       300/300
(100 %)
2 diff
(99.4 %id)
BE550307 pooled germ cell tumors .c 2023 to 2322 300 to 1       300/300
(100 %)
0 diff
(100 %id)
BE550448 pooled germ cell tumors .c 2023 to 2322 300 to 1       300/300
(100 %)
0 diff
(100 %id)
TI_57171235   .c 2070 to 2429 29 to 386   AAA   358/386
(92 %)
12 diff
(96.9 %id)
BI830532 brain, medulla .c 2075 to 2429 1 to 353   AAA   353/353
(100 %)
3 diff
(99.2 %id)
AA399611   .c 2084 to 2429 349 to 4   fully sequenced,   346/349
(99 %)
0 diff
(100 %id)
AA758412   .c 2091 to 2429 371 to 33   AAA   339/339
(100 %)
0 diff
(100 %id)
BF091400 testis_normal .c 2172 to 2343 1 to 173       173/207
(83 %)
4 diff
(98.1 %id)
DB536903 hippocampus .c 2204 to 2427 1 to 225     Submitted on the opposite strand 225/227
(99 %)
6 diff
(97.4 %id)
AA608877   .c 2286 to 2429 148 to 5       144/148
(97 %)
0 diff
(100 %id)
DB521525 testis .c 2332 to 2797 1 to 466     Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
DB523148 testis .c 2341 to 2795 1 to 455     Submitted on the opposite strand 455/457
(99 %)
1 diff
(99.8 %id)
DB514163 testis .c 2342 to 2771 1 to 430     Submitted on the opposite strand 430/431
(99 %)
2 diff
(99.6 %id)
DB508844 testis .c 2350 to 2795 1 to 449     Submitted on the opposite strand 449/449
(100 %)
7 diff
(98.5 %id)
DB515843 testis .c 2355 to 2795 1 to 441     Submitted on the opposite strand 441/442
(99 %)
6 diff
(98.7 %id)
DB515660 testis .c 2359 to 2778 1 to 420     Submitted on the opposite strand 420/420
(100 %)
4 diff
(99.1 %id)
DB508256 testis .c 2382 to 2809 1 to 428   tiling clone, Submitted on the opposite strand 428/428
(100 %)
0 diff
(100 %id)
DB508397 testis .c 2384 to 2795 1 to 412     Submitted on the opposite strand 412/412
(100 %)
0 diff
(100 %id)
DB510992 testis .c 2394 to 2795 1 to 402     Submitted on the opposite strand 402/402
(100 %)
1 diff
(99.8 %id)
DB510911 testis .c 2403 to 2795 1 to 393     Submitted on the opposite strand 393/393
(100 %)
0 diff
(100 %id)
AI867555 pooled germ cell tumors .c 2408 to 2798 391 to 1       391/391
(100 %)
1 diff
(99.8 %id)
NM_001166534.1   .d 1 to 2376 4 to 2379 exact RefSeq,   2379/2379
(100 %)
0 diff
(100 %id)
AK093439 testis .d 24 to 2007 1 to 1984 Q91R tiling clone, available from FLJ,   1984/1984
(100 %)
2 diff
(99.9 %id)
AX748127   .d 24 to 2007 1 to 1984 Q91R     1984/1984
(100 %)
2 diff
(99.9 %id)
DB036887 testis .d 25 to 598 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DB337509 testis .d 1465 to 2007 543 to 1       543/543
(100 %)
0 diff
(100 %id)
DB044375 testis .e 1 to 545 2 to 552   tiling clone, capped   551/551
(100 %)
6 diff
(99.0 %id)
BI561001 testis .e 2 to 823 1 to 835 G69D F70A S71G N72F R74N ... tiling clone,   835/918
(90 %)
22 diff
(97.7 %id)
TI_44349408   .e 4 to 823 91 to 923 G69D F70A S71G N72F R74N ...     833/1006
(82 %)
25 diff
(97.6 %id)
DB041662 testis .e 31 to 586 2 to 563   capped   562/562
(100 %)
5 diff
(99.2 %id)
DB456760 testis .f 1 to 489 1 to 489   tiling clone,   489/489
(100 %)
5 diff
(99.0 %id)
DB522190 testis .f 453 to 938 1 to 486   tiling clone, Submitted on the opposite strand 486/486
(100 %)
1 diff
(99.8 %id)
DB051674 testis .g 1 to 563 5 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB022413 testis .g 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DB054736 testis .g 25 to 583 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DB026769 testis .h 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DB041205 testis .i 1 to 548 2 to 549 exact tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
BI460628 testis .j 1 to 593 8 to 600 K56N S57T G58W F59I A60C ... tiling clone,   602/604
(99 %)
16 diff
(97.4 %id)
DC396189 testis .k -9 to 557 1 to 568 exact tiling clone,   568/568
(100 %)
1 diff
(99.9 %id)
DB025602 testis .l 1 to 555 2 to 556 exact tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
AF262962   Gene DDX4, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB455223 testis Gene DDX4, variant not shown         This clone was ignored    
BI559479 testis Gene DDX4, variant not shown         This clone was ignored    
TI_44348275   Gene DDX4, variant not shown         This clone was ignored    
DB034414 testis Gene DDX4, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB052321 testis Gene DDX4, variant not shown       capped This clone was ignored    
DB338654 testis Gene DDX4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI